Liang-Hu Qu

Liang-Hu Qu

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Liang-Hu Qu

Publications by authors named "Liang-Hu Qu"

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MicroRNA-122 supports robust innate immunity in hepatocytes by targeting the RTKs/STAT3 signaling pathway.

Elife 2019 Feb 8;8. Epub 2019 Feb 8.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China.

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http://dx.doi.org/10.7554/eLife.41159DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6389286PMC
February 2019

miR-372 and miR-373 enhance the stemness of colorectal cancer cells by repressing differentiation signaling pathways.

Mol Oncol 2018 11 24;12(11):1949-1964. Epub 2018 Sep 24.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China.

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http://dx.doi.org/10.1002/1878-0261.12376DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6210048PMC
November 2018

Inhibition of the JNK/MAPK signaling pathway by myogenesis-associated miRNAs is required for skeletal muscle development.

Cell Death Differ 2018 09 15;25(9):1581-1597. Epub 2018 Feb 15.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, China.

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http://dx.doi.org/10.1038/s41418-018-0063-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143622PMC
September 2018

A group of tissue-specific microRNAs contribute to the silencing of CUX1 in different cell lineages during development.

J Cell Biochem 2018 07 16;119(7):6238-6248. Epub 2018 Apr 16.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, P. R. China.

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http://dx.doi.org/10.1002/jcb.26852DOI Listing
July 2018

RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data.

Nucleic Acids Res 2018 01;46(D1):D327-D334

Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-sen University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1093/nar/gkx934DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753293PMC
January 2018

dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease.

Nucleic Acids Res 2018 01;46(D1):D85-D91

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1093/nar/gkx972DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753186PMC
January 2018

Comprehensive Genomic Characterization of RNA-Binding Proteins across Human Cancers.

Cell Rep 2018 01;22(1):286-298

Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-sen University, Guangzhou 510275, China; State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, China. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.12.035DOI Listing
January 2018

oncoNcRNA: A Web Portal for Exploring the Non-Coding RNAs with Oncogenic Potentials in Human Cancers.

Noncoding RNA 2017 Feb 7;3(1). Epub 2017 Feb 7.

Key Laboratory of Gene Engineering of the Ministry of Education, GuangZhou 510275, China.

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http://dx.doi.org/10.3390/ncrna3010007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5832004PMC
February 2017

Exo-miRExplorer: A Comprehensive Resource for Exploring and Comparatively Analyzing Exogenous MicroRNAs.

Front Microbiol 2017 1;8:126. Epub 2017 Feb 1.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, RNA Information Center, School of Life Sciences, Sun Yat-sen University Guangzhou, China.

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http://journal.frontiersin.org/article/10.3389/fmicb.2017.00
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http://dx.doi.org/10.3389/fmicb.2017.00126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5285362PMC
February 2017

Oridonin induces autophagy via inhibition of glucose metabolism in p53-mutated colorectal cancer cells.

Cell Death Dis 2017 02 23;8(2):e2633. Epub 2017 Feb 23.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, China.

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http://dx.doi.org/10.1038/cddis.2017.35DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5386482PMC
February 2017

ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data.

Nucleic Acids Res 2017 01 23;45(D1):D43-D50. Epub 2016 Oct 23.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P. R. China

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http://dx.doi.org/10.1093/nar/gkw965DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210649PMC
January 2017

Computational Approaches to tRNA-Derived Small RNAs.

Noncoding RNA 2017 Jan 4;3(1). Epub 2017 Jan 4.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China.

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http://dx.doi.org/10.3390/ncrna3010002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5832003PMC
January 2017

27-Hydroxycholesterol increases Myc protein stability via suppressing PP2A, SCP1 and FBW7 transcription in MCF-7 breast cancer cells.

Biochem Biophys Res Commun 2016 Nov 14;480(3):328-333. Epub 2016 Oct 14.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2016.10.038DOI Listing
November 2016

tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers.

Nucleic Acids Res 2016 07 13;44(W1):W185-93. Epub 2016 May 13.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, P. R. China

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http://dx.doi.org/10.1093/nar/gkw414DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987945PMC
July 2016

Wnt/β-catenin pathway transactivates microRNA-150 that promotes EMT of colorectal cancer cells by suppressing CREB signaling.

Oncotarget 2016 Jul;7(27):42513-42526

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, P. R. China.

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http://dx.doi.org/10.18632/oncotarget.9893DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5173152PMC
July 2016

Integrative analysis reveals clinical phenotypes and oncogenic potentials of long non-coding RNAs across 15 cancer types.

Oncotarget 2016 Jun;7(23):35044-55

Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-sen University, Guangzhou, China.

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http://dx.doi.org/10.18632/oncotarget.9037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5085208PMC
June 2016

[Application of Bioinformatics in Long Non-coding RNAs].

Sheng Li Ke Xue Jin Zhan 2016 Jun;47(3):168-76

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June 2016

RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data.

Nucleic Acids Res 2016 Jan 12;44(D1):D259-65. Epub 2015 Oct 12.

Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-sen University, Guangzhou 510275, P. R. China State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P. R. China

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http://dx.doi.org/10.1093/nar/gkv1036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702777PMC
January 2016

deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data.

Nucleic Acids Res 2016 Jan 20;44(D1):D196-202. Epub 2015 Nov 20.

RNA Information Center, Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P.R. China

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http://dx.doi.org/10.1093/nar/gkv1273DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702900PMC
January 2016

StarScan: a web server for scanning small RNA targets from degradome sequencing data.

Nucleic Acids Res 2015 Jul 18;43(W1):W480-6. Epub 2015 May 18.

Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-sen University, Guangzhou 510275, P. R. China State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P. R. China

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http://dx.doi.org/10.1093/nar/gkv524DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489260PMC
July 2015

Cancer in the parasitic protozoans Trypanosoma brucei and Toxoplasma gondii.

Proc Natl Acad Sci U S A 2015 Jul 20;112(29):8835-42. Epub 2015 Jul 20.

Department of Ecology and Evolutionary Biology, University of California, Irvine, CA 92697

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http://dx.doi.org/10.1073/pnas.1502599112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4517281PMC
July 2015

A contig-based strategy for the genome-wide discovery of microRNAs without complete genome resources.

PLoS One 2014 7;9(2):e88179. Epub 2014 Feb 7.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, and School of Life Sciences, Sun Yat-sen University, Guangzhou, P. R. China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0088179PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3917882PMC
May 2015

Application of microRNA gene resources in the improvement of agronomic traits in rice.

Plant Biotechnol J 2015 Apr 13;13(3):329-36. Epub 2015 Jan 13.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China.

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http://dx.doi.org/10.1111/pbi.12321DOI Listing
April 2015

Rapid birth-and-death evolution of imprinted snoRNAs in the Prader-Willi syndrome locus: implications for neural development in Euarchontoglires.

PLoS One 2014 19;9(6):e100329. Epub 2014 Jun 19.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, and School of Life Sciences, Sun Yat-sen University, Guangzhou, P. R. China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100329PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4063771PMC
March 2015

Marek's disease virus-encoded analog of microRNA-155 activates the oncogene c-Myc by targeting LTBP1 and suppressing the TGF-β signaling pathway.

Virology 2015 Feb 19;476:72-84. Epub 2014 Dec 19.

Key Laboratory of Animal Immunology of the Ministry of Agriculture, Henan Provincial Key Laboratory of Animal Immunology, Henan Academy of Agricultural Sciences, Zhengzhou 450002, People׳s Republic of China. Electronic address:

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http://dx.doi.org/10.1016/j.virol.2014.11.027DOI Listing
February 2015

Discovery of Protein-lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets.

Front Bioeng Biotechnol 2014 14;2:88. Epub 2015 Jan 14.

RNA Information Center, Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University , Guangzhou , China.

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http://dx.doi.org/10.3389/fbioe.2014.00088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4294205PMC
February 2015

MiR397b regulates both lignin content and seed number in Arabidopsis via modulating a laccase involved in lignin biosynthesis.

Plant Biotechnol J 2014 Oct 29;12(8):1132-42. Epub 2014 Jun 29.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-Sen University, Guangzhou, China.

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http://dx.doi.org/10.1111/pbi.12222DOI Listing
October 2014

Conservation and divergence of transcriptional coregulations between box C/D snoRNA and ribosomal protein genes in Ascomycota.

RNA 2014 Sep 7;20(9):1376-85. Epub 2014 Jul 7.

State Key Laboratory of Biocontrol and Key Laboratory of Gene Engineering of the Ministry of Education, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, People's Republic of China

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http://dx.doi.org/10.1261/rna.042309.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4138321PMC
September 2014

Both endo-siRNAs and tRNA-derived small RNAs are involved in the differentiation of primitive eukaryote Giardia lamblia.

Proc Natl Acad Sci U S A 2014 Sep 15;111(39):14159-64. Epub 2014 Sep 15.

State Key Laboratory of Biocontrol and Key Laboratory of Gene Engineering of the Ministry of Education, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, People's Republic of China;

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http://dx.doi.org/10.1073/pnas.1414394111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4191773PMC
September 2014

Pachytene piRNAs instruct massive mRNA elimination during late spermiogenesis.

Cell Res 2014 Jun 2;24(6):680-700. Epub 2014 May 2.

1] Center for RNA Research, State Key Laboratory of Molecular Biology-University of Chinese Academy of Sciences, Shanghai 200031, China [2] Shanghai Key Laboratory of Molecular Andrology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China.

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http://dx.doi.org/10.1038/cr.2014.41DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4042167PMC
June 2014

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.

Nucleic Acids Res 2014 Jan 1;42(Database issue):D92-7. Epub 2013 Dec 1.

RNA Information Center, Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, PR China.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
Publisher Site
http://dx.doi.org/10.1093/nar/gkt1248DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964941PMC
January 2014

Virus-encoded miR-155 ortholog is an important potential regulator but not essential for the development of lymphomas induced by very virulent Marek's disease virus.

Virology 2014 Jan 20;448:55-64. Epub 2013 Oct 20.

Key Laboratory of Animal Immunology of the Ministry of Agriculture, Henan Provincial Key Laboratory of Animal Immunology, Henan Academy of Agricultural Sciences, No.116 Huayuan Road, Zhengzhou 450002, People's Republic of China; College of Animal Science and Veterinary Medicine, Jilin University, Changchun 130062, People's Republic of China; College of Animal Science and Technology, Henan University of Science and Technology, Luoyang 471003, People's Republic of China.

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http://dx.doi.org/10.1016/j.virol.2013.09.017DOI Listing
January 2014

The ribosomal protein rpl26 promoter is required for its 3' sense terminus ncRNA transcription in Schizosaccharomyces pombe, implicating a new transcriptional mechanism for ncRNAs.

Biochem Biophys Res Commun 2014 Jan 14;444(1):86-91. Epub 2014 Jan 14.

State Key Laboratory of Biocontrol, Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-sen University, Guangzhou 510275, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2014.01.018DOI Listing
January 2014

Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching.

Nat Biotechnol 2013 Sep 21;31(9):848-52. Epub 2013 Jul 21.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, School of Life Science, Sun Yat-Sen University, Guangzhou, PR China.

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https://xa.yimg.com/kq/groups/1920818/1491448208/name/nbt.26
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http://www.nature.com/doifinder/10.1038/nbt.2646
Publisher Site
http://dx.doi.org/10.1038/nbt.2646DOI Listing
September 2013

Comparative transcriptome analysis of small noncoding RNAs in different stages of Trypanosoma brucei.

RNA 2013 Jul 23;19(7):863-75. Epub 2013 May 23.

State Key Laboratory of Biocontrol, Key Laboratory of Gene Engineering, Ministry of Education, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, China.

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http://dx.doi.org/10.1261/rna.035683.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3683921PMC
July 2013

Discovery of microRNA regulatory networks by integrating multidimensional high-throughput data.

Adv Exp Med Biol 2013 ;774:251-66

Sun Yat-sen University, Guangzhou, People's Republic of China.

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http://dx.doi.org/10.1007/978-94-007-5590-1_13DOI Listing
June 2013

mirExplorer: detecting microRNAs from genome and next generation sequencing data using the AdaBoost method with transition probability matrix and combined features.

RNA Biol 2011 Sep-Oct;8(5):922-34. Epub 2011 Sep 1.

State Key Laboratory of Biocontrol, Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-Sen University, Guangzhou, China.

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http://dx.doi.org/10.4161/rna.8.5.16026DOI Listing
January 2013

Deciphering the transcriptional regulation of microRNA genes in humans with ACTLocater.

Nucleic Acids Res 2013 Jan 31;41(1):e5. Epub 2012 Aug 31.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, People's Republic of China.

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http://dx.doi.org/10.1093/nar/gks821DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3592406PMC
January 2013

ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data.

Nucleic Acids Res 2013 Jan 17;41(Database issue):D177-87. Epub 2012 Nov 17.

RNA Information Center, Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P.R. China.

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http://dx.doi.org/10.1093/nar/gks1060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531181PMC
January 2013

RTL-P: a sensitive approach for detecting sites of 2'-O-methylation in RNA molecules.

Nucleic Acids Res 2012 Nov 24;40(20):e157. Epub 2012 Jul 24.

Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-sen University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1093/nar/gks698DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3488209PMC
November 2012

Insulin-like growth factor-1 receptor is regulated by microRNA-133 during skeletal myogenesis.

PLoS One 2011 15;6(12):e29173. Epub 2011 Dec 15.

Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-sen University, Guangzhou, People's Republic of China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029173PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3240640PMC
August 2012

Extremely low genetic diversity indicating the endangered status of Ranodon sibiricus (Amphibia: Caudata) and implications for phylogeography.

PLoS One 2012 12;7(3):e33378. Epub 2012 Mar 12.

State Key Laboratory of Biocontrol, Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-sen University, Guangzhou, People's Republic of China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0033378PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3299782PMC
August 2012

Translational repression of cyclin D3 by a stable G-quadruplex in its 5' UTR: implications for cell cycle regulation.

RNA Biol 2012 Aug 1;9(8):1099-109. Epub 2012 Aug 1.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China.

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http://dx.doi.org/10.4161/rna.21210DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3551864PMC
August 2012

Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus.

RNA Biol 2011 May-Jun;8(3):538-47. Epub 2011 May 1.

Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-sen University, PR China.

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http://dx.doi.org/10.4161/rna.8.3.15199DOI Listing
May 2012

Triggering Fbw7-mediated proteasomal degradation of c-Myc by oridonin induces cell growth inhibition and apoptosis.

Mol Cancer Ther 2012 May 2;11(5):1155-65. Epub 2012 Mar 2.

Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, PR China.

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http://dx.doi.org/10.1158/1535-7163.MCT-12-0066DOI Listing
May 2012

DeepBase: annotation and discovery of microRNAs and other noncoding RNAs from deep-sequencing data.

Methods Mol Biol 2012 ;822:233-48

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, P.R. China.

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http://dx.doi.org/10.1007/978-1-61779-427-8_16DOI Listing
April 2012

Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation.

RNA Biol 2012 Feb 1;9(2):212-27. Epub 2012 Feb 1.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, Sun Yat-sen University, Guangzhou, China.

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http://dx.doi.org/10.4161/rna.18489DOI Listing
February 2012

Pseudogenes are not pseudo any more.

RNA Biol 2012 Jan 1;9(1):27-32. Epub 2012 Jan 1.

School of Life Sciences and Key Laboratory of Tropical Diseases and Control of the Ministry of Education, Zhongshan School of Medicine, Sun Yat-Sen University, Guangzhou, China.

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http://dx.doi.org/10.4161/rna.9.1.18277DOI Listing
January 2012

miR-125b, a target of CDX2, regulates cell differentiation through repression of the core binding factor in hematopoietic malignancies.

J Biol Chem 2011 Nov 8;286(44):38253-63. Epub 2011 Sep 8.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, China.

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http://dx.doi.org/10.1074/jbc.M111.269670DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3207448PMC
November 2011

Down-regulated miR-331-5p and miR-27a are associated with chemotherapy resistance and relapse in leukaemia.

J Cell Mol Med 2011 Oct;15(10):2164-75

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China.

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http://dx.doi.org/10.1111/j.1582-4934.2010.01213.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4394226PMC
October 2011

Pseudogene-derived small interference RNAs regulate gene expression in African Trypanosoma brucei.

Proc Natl Acad Sci U S A 2011 May 29;108(20):8345-50. Epub 2011 Apr 29.

Center for Parasitic Organisms, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, People's Republic of China.

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http://dx.doi.org/10.1073/pnas.1103894108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3100955PMC
May 2011

Expression profiles of microRNAs encoded by the oncogenic Marek's disease virus reveal two distinct expression patterns in vivo during different phases of disease.

J Gen Virol 2011 Mar 9;92(Pt 3):608-20. Epub 2010 Dec 9.

Key Laboratory of Animal Immunology of the Ministry of Agriculture, Henan Academy of Agricultural Sciences, Zhengzhou 450002, PR China.

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http://dx.doi.org/10.1099/vir.0.024158-0DOI Listing
March 2011

Plant noncoding RNA gene discovery by "single-genome comparative genomics".

RNA 2011 Mar 10;17(3):390-400. Epub 2011 Jan 10.

Institut de Génétique et Microbiologie, CNRS/UMR 8621, Université Paris Sud, Orsay, France.

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http://dx.doi.org/10.1261/rna.2426511DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3039139PMC
March 2011

starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.

Nucleic Acids Res 2011 Jan 30;39(Database issue):D202-9. Epub 2010 Oct 30.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1093/nar/gkq1056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013664PMC
January 2011

ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs.

RNA 2010 Oct 26;16(10):1889-901. Epub 2010 Aug 26.

State Key Laboratory of Biocontrol, Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-sen University, Guangzhou, People's Republic of China.

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http://dx.doi.org/10.1261/rna.2226910DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2941098PMC
October 2010

Liver-enriched transcription factors regulate microRNA-122 that targets CUTL1 during liver development.

Hepatology 2010 Oct;52(4):1431-42

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-Sen University, Guangzhou, People's Republic of China.

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http://dx.doi.org/10.1002/hep.23818DOI Listing
October 2010

High glucose down-regulates miR-29a to increase collagen IV production in HK-2 cells.

FEBS Lett 2010 Feb 12;584(4):811-6. Epub 2010 Jan 12.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, PR China.

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http://dx.doi.org/10.1016/j.febslet.2009.12.053DOI Listing
February 2010

deepBase: a database for deeply annotating and mining deep sequencing data.

Nucleic Acids Res 2010 Jan 4;38(Database issue):D123-30. Epub 2009 Dec 4.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1093/nar/gkp943DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808990PMC
January 2010

SnoRNAs from the filamentous fungus Neurospora crassa: structural, functional and evolutionary insights.

BMC Genomics 2009 Nov 8;10:515. Epub 2009 Nov 8.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1186/1471-2164-10-515DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2780460PMC
November 2009

MicroRNA patterns associated with clinical prognostic parameters and CNS relapse prediction in pediatric acute leukemia.

PLoS One 2009 Nov 13;4(11):e7826. Epub 2009 Nov 13.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-Sen University, Guangzhou, PR China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007826PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2773830PMC
November 2009

MicroRNA-21 promotes cell proliferation and down-regulates the expression of programmed cell death 4 (PDCD4) in HeLa cervical carcinoma cells.

Biochem Biophys Res Commun 2009 Oct 12;388(3):539-42. Epub 2009 Aug 12.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-Sen University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1016/j.bbrc.2009.08.044DOI Listing
October 2009

Genome-wide analysis of small RNA and novel MicroRNA discovery in human acute lymphoblastic leukemia based on extensive sequencing approach.

PLoS One 2009 Sep 2;4(9):e6849. Epub 2009 Sep 2.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, People's Republic of China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0006849PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2731166PMC
September 2009

Evaluating the evolution of G. lamblia based on the small nucleolar RNAs identified from Archaea and unicellular eukaryotes.

Parasitol Res 2009 Jun 27;104(6):1543-6. Epub 2009 Mar 27.

Key Laboratory of Gene Engineering of the Ministry of Education, School of Life Sciences, Sun Yat-Sen (Zhongshan) University, Guangzhou, People's Republic of China.

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http://link.springer.com/10.1007/s00436-009-1403-3
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June 2009

Genome-wide evolutionary analysis of the noncoding RNA genes and noncoding DNA of Paramecium tetraurelia.

RNA 2009 Apr 13;15(4):503-14. Epub 2009 Feb 13.

Institut de Biologie Animale Intégrative et Cellulaire, Université Paris Sud, Orsay, France

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http://dx.doi.org/10.1261/rna.1306009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2661823PMC
April 2009

RNomics: the new frontier in the post-genomic era.

Authors:
Qu Liang-Hu

Sci China C Life Sci 2009 Mar;52(3):193-4

College of Life Sciences, Sun Yan-Sen University, Guangzhou, 510275, China,

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http://dx.doi.org/10.1007/s11427-009-0043-2DOI Listing
March 2009

Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling.

FEBS Lett 2009 Feb 22;583(4):723-8. Epub 2009 Jan 22.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Biotechnology Research Center, Sun Yat-sen University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1016/j.febslet.2009.01.020DOI Listing
February 2009

A unique insertion in the CP1 domain of Giardia lamblia leucyl-tRNA synthetase.

Biochemistry 2009 Feb;48(6):1340-7

State Key Laboratory of Molecular Biology, Graduate School of the Chinese Academy of Sciences, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, The Chinese Academy of Sciences, People's Republic of China.

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http://dx.doi.org/10.1021/bi801832jDOI Listing
February 2009

Genome-wide analysis of chicken snoRNAs provides unique implications for the evolution of vertebrate snoRNAs.

BMC Genomics 2009 Feb 22;10:86. Epub 2009 Feb 22.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Zhongshan University, Guangzhou, PR China.

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http://dx.doi.org/10.1186/1471-2164-10-86DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2653536PMC
February 2009

Phylogeography of a widespread terrestrial vertebrate in a barely-studied Palearctic region: green toads (Bufo viridis subgroup) indicate glacial refugia in Eastern Central Asia.

Genetica 2008 Nov 27;134(3):353-65. Epub 2008 Feb 27.

Key Laboratory of Gene Engineering of the Ministry of Education, Biotechnology Research Center, Zhongshan University, Guangzhou, 510275, P.R. China.

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http://dx.doi.org/10.1007/s10709-008-9243-0DOI Listing
November 2008

Stress-induced tRNA-derived RNAs: a novel class of small RNAs in the primitive eukaryote Giardia lamblia.

Nucleic Acids Res 2008 Nov 27;36(19):6048-55. Epub 2008 Sep 27.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Zhongshan University, Guangzhou 510275, P. R. China.

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http://dx.doi.org/10.1093/nar/gkn596DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2577346PMC
November 2008

The rat mitochondrial Ori L encodes a novel small RNA resembling an ancestral tRNA.

Biochem Biophys Res Commun 2008 Aug 2;372(4):634-8. Epub 2008 Jun 2.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Zhongshan University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1016/j.bbrc.2008.05.092DOI Listing
August 2008

Identification of novel chicken microRNAs and analysis of their genomic organization.

Gene 2008 Jul 15;418(1-2):34-40. Epub 2008 Apr 15.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Zhongshan University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1016/j.gene.2008.04.004DOI Listing
July 2008

Genomewide analysis of box C/D and box H/ACA snoRNAs in Chlamydomonas reinhardtii reveals an extensive organization into intronic gene clusters.

Genetics 2008 May;179(1):21-30

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Zhongshan University, Guangzhou 510275, People's Republic of China.

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http://dx.doi.org/10.1534/genetics.107.086025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2390600PMC
May 2008

The Chlamydomonas genome reveals the evolution of key animal and plant functions.

Authors:
Sabeeha S Merchant Simon E Prochnik Olivier Vallon Elizabeth H Harris Steven J Karpowicz George B Witman Astrid Terry Asaf Salamov Lillian K Fritz-Laylin Laurence Maréchal-Drouard Wallace F Marshall Liang-Hu Qu David R Nelson Anton A Sanderfoot Martin H Spalding Vladimir V Kapitonov Qinghu Ren Patrick Ferris Erika Lindquist Harris Shapiro Susan M Lucas Jane Grimwood Jeremy Schmutz Pierre Cardol Heriberto Cerutti Guillaume Chanfreau Chun-Long Chen Valérie Cognat Martin T Croft Rachel Dent Susan Dutcher Emilio Fernández Hideya Fukuzawa David González-Ballester Diego González-Halphen Armin Hallmann Marc Hanikenne Michael Hippler William Inwood Kamel Jabbari Ming Kalanon Richard Kuras Paul A Lefebvre Stéphane D Lemaire Alexey V Lobanov Martin Lohr Andrea Manuell Iris Meier Laurens Mets Maria Mittag Telsa Mittelmeier James V Moroney Jeffrey Moseley Carolyn Napoli Aurora M Nedelcu Krishna Niyogi Sergey V Novoselov Ian T Paulsen Greg Pazour Saul Purton Jean-Philippe Ral Diego Mauricio Riaño-Pachón Wayne Riekhof Linda Rymarquis Michael Schroda David Stern James Umen Robert Willows Nedra Wilson Sara Lana Zimmer Jens Allmer Janneke Balk Katerina Bisova Chong-Jian Chen Marek Elias Karla Gendler Charles Hauser Mary Rose Lamb Heidi Ledford Joanne C Long Jun Minagawa M Dudley Page Junmin Pan Wirulda Pootakham Sanja Roje Annkatrin Rose Eric Stahlberg Aimee M Terauchi Pinfen Yang Steven Ball Chris Bowler Carol L Dieckmann Vadim N Gladyshev Pamela Green Richard Jorgensen Stephen Mayfield Bernd Mueller-Roeber Sathish Rajamani Richard T Sayre Peter Brokstein Inna Dubchak David Goodstein Leila Hornick Y Wayne Huang Jinal Jhaveri Yigong Luo Diego Martínez Wing Chi Abby Ngau Bobby Otillar Alexander Poliakov Aaron Porter Lukasz Szajkowski Gregory Werner Kemin Zhou Igor V Grigoriev Daniel S Rokhsar Arthur R Grossman

Science 2007 Oct;318(5848):245-50

Department of Chemistry and Biochemistry, University of California at Los Angeles, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1126/science.1143609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2875087PMC
October 2007

Exploration of pairing constraints identifies a 9 base-pair core within box C/D snoRNA-rRNA duplexes.

J Mol Biol 2007 Jun 24;369(3):771-83. Epub 2007 Mar 24.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Zhongshan University, Guangzhou, 510275, People's Republic of China.

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http://dx.doi.org/10.1016/j.jmb.2007.03.052DOI Listing
June 2007

A combined computational and experimental analysis of two families of snoRNA genes from Caenorhabditis elegans, revealing the expression and evolution pattern of snoRNAs in nematodes.

Genomics 2007 Apr 11;89(4):490-501. Epub 2007 Jan 11.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Zhongshan University, Guangzhou, 510275, China.

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http://dx.doi.org/10.1016/j.ygeno.2006.12.002DOI Listing
April 2007

Characterization and functional analysis of a novel double-guide C/D box snoRNA in the fission yeast.

Biochem Biophys Res Commun 2007 Mar 8;354(1):302-8. Epub 2007 Jan 8.

Key Laboratory of Gene Engineering of the Ministry of Education, Biotechnology Research Center, Zhongshan University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1016/j.bbrc.2006.12.207DOI Listing
March 2007

Leachates from municipal solid waste disposal sites harbor similar, novel nitrogen-cycling bacterial communities.

FEMS Microbiol Lett 2007 Feb 13;267(2):236-42. Epub 2006 Dec 13.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, Zhongshan University, Guangzhou, China.

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http://dx.doi.org/10.1111/j.1574-6968.2006.00560.xDOI Listing
February 2007

snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome.

Nucleic Acids Res 2006 20;34(18):5112-23. Epub 2006 Sep 20.

Key Laboratory of Gene Engineering of the Ministry of Education, Zhongshan University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1093/nar/gkl672DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1636440PMC
December 2006

Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development.

FEBS Lett 2006 Sep 1;580(21):5111-6. Epub 2006 Sep 1.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Zhongshan University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1016/j.febslet.2006.08.046DOI Listing
September 2006

Phylogeny, evolution, and biogeography of Asiatic Salamanders (Hynobiidae).

Proc Natl Acad Sci U S A 2006 May 28;103(19):7360-5. Epub 2006 Apr 28.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, Zhongshan University, Guangzhou 510275, People's Republic of China.

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http://dx.doi.org/10.1073/pnas.0602325103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1464346PMC
May 2006

Characterization of three novel imprinted snoRNAs from mouse Irm gene.

Biochem Biophys Res Commun 2006 Feb 4;340(4):1217-23. Epub 2006 Jan 4.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Zhongshan University, Guangzhou 510275, People's Republic of China.

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http://dx.doi.org/10.1016/j.bbrc.2005.12.128DOI Listing
February 2006

A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes.

Nucleic Acids Res 2005 Dec 15;33(22):e194. Epub 2005 Dec 15.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Zhongshan University, Guangzhou 510275, People's Republic of China.

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http://dx.doi.org/10.1093/nar/gni185DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1316117PMC
December 2005

Maintaining a conserved methylation in plant and insect U2 snRNA through compensatory mutation by nucleotide insertion.

IUBMB Life 2005 Oct;57(10):693-9

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Zhongshan University, Guangzhou, People's Republic of China.

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http://dx.doi.org/10.1080/15216540500306983DOI Listing
October 2005

Tyr152 plays a central role in the catalysis of 1-aminocyclopropane-1-carboxylate synthase.

J Exp Bot 2005 Aug 27;56(418):2203-10. Epub 2005 Jun 27.

Department of Biology, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong SAR, China.

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http://dx.doi.org/10.1093/jxb/eri220DOI Listing
August 2005

Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs.

RNA 2005 Aug 29;11(8):1303-16. Epub 2005 Jun 29.

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, Zhongshan University, Guangzhou 510275, Republic of China.

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http://dx.doi.org/10.1261/rna.2380905DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1370813PMC
August 2005

High diversity of endophytic fungi from the pharmaceutical plant, Heterosmilax japonica Kunth revealed by cultivation-independent approach.

FEMS Microbiol Lett 2005 Aug;249(2):255-66

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Zhongshan University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1016/j.femsle.2005.06.017DOI Listing
August 2005

Mitogenomic perspectives on the origin and phylogeny of living amphibians.

Syst Biol 2005 Jun;54(3):391-400

Key Laboratory of Gene Engineering of the Ministry of Education, Biotechnology Research Center, Zhongshan University, Guangzhou, 510275, P. R. China.

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http://dx.doi.org/10.1080/10635150590945278DOI Listing
June 2005

Identification and functional analysis of 20 Box H/ACA small nucleolar RNAs (snoRNAs) from Schizosaccharomyces pombe.

J Biol Chem 2005 Apr 16;280(16):16446-55. Epub 2005 Feb 16.

Key Laboratory of Gene Engineering of the Ministry of Education, Biotechnology Research Center, Zhongshan University, Guangzhou 510275, China.

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http://dx.doi.org/10.1074/jbc.M500326200DOI Listing
April 2005

Identification of 20 snoRNA-like RNAs from the primitive eukaryote, Giardia lamblia.

Biochem Biophys Res Commun 2005 Mar;328(4):1224-31

Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Zhongshan University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1016/j.bbrc.2005.01.077DOI Listing
March 2005

The complete mitochondrial genome of a tree frog, Polypedates megacephalus (Amphibia: Anura: Rhacophoridae), and a novel gene organization in living amphibians.

Gene 2005 Feb 27;346:133-43. Epub 2005 Jan 27.

Key Laboratory of Gene Engineering of the Ministry of Education, Biotechnology Research Center, Zhongshan University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1016/j.gene.2004.10.012DOI Listing
February 2005

Molecular phylogenetic diversity of bacteria associated with the leachate of a closed municipal solid waste landfill.

FEMS Microbiol Lett 2005 Jan;242(2):297-303

Key Laboratory of Gene Engineering of the Ministry of Education, School of Life Sciences, Zhongshan University, Guangzhou 510275, PR China.

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http://dx.doi.org/10.1016/j.femsle.2004.11.021DOI Listing
January 2005

Phylogenetic diversity of bacteria in the leachate of a full-scale recirculating landfill.

FEMS Microbiol Ecol 2004 Nov;50(3):175-83

Key Laboratory of Gene Engineering of the Ministry of Education, School of Life Sciences, Zhongshan University, Guangzhou, PR China.

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http://dx.doi.org/10.1016/j.femsec.2004.06.008DOI Listing
November 2004

Genetic diversity of small eukaryotes from the coastal waters of Nansha Islands in China.

FEMS Microbiol Lett 2004 Nov;240(2):163-70

Key Laboratory of Gene Engineering of the Ministry of Education, Biotechnology Research Center, Zhongshan University, Guangzhou 510275, China.

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http://dx.doi.org/10.1016/j.femsle.2004.09.030DOI Listing
November 2004

Different expression strategy: multiple intronic gene clusters of box H/ACA snoRNA in Drosophila melanogaster.

J Mol Biol 2004 Aug;341(3):669-83

Key Laboratory of Gene Engineering of the Ministry of Education, Biotechnology Research Center, Zhongshan University, Guangzhou, 510275, People's Republic of China.

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http://dx.doi.org/10.1016/j.jmb.2004.06.041DOI Listing
August 2004