Leyi Wei

Leyi Wei

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Leyi Wei

Leyi Wei

Publications by authors named "Leyi Wei"

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Identification of Expression Signatures For Non-Small-Cell Lung Carcinoma Subtype Classification.

Bioinformatics 2019 Jul 11. Epub 2019 Jul 11.

School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1093/bioinformatics/btz557DOI Listing
July 2019

Meta-4mCpred: A Sequence-Based Meta-Predictor for Accurate DNA 4mC Site Prediction Using Effective Feature Representation.

Mol Ther Nucleic Acids 2019 Jun 30;16:733-744. Epub 2019 Apr 30.

Department of Physiology, Ajou University School of Medicine, Suwon, Republic of Korea; Institute of Molecular Science and Technology, Ajou University, Suwon, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.omtn.2019.04.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6540332PMC
June 2019

PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact.

Brief Bioinform 2019 Jun 4. Epub 2019 Jun 4.

Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1093/bib/bbz050DOI Listing
June 2019

Iterative feature representations improve N4-methylcytosine site prediction.

Bioinformatics 2019 May 17. Epub 2019 May 17.

Institute of Computing Science & Technology, Guangzhou University, Guangzhou, China.

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https://academic.oup.com/bioinformatics/advance-article/doi/
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http://dx.doi.org/10.1093/bioinformatics/btz408DOI Listing
May 2019

Exploring sequence-based features for the improved prediction of DNA N4-methylcytosine sites in multiple species.

Bioinformatics 2019 Apr;35(8):1326-1333

School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1093/bioinformatics/bty824DOI Listing
April 2019

PEPred-Suite: improved and robust prediction of therapeutic peptides using adaptive feature representation learning.

Bioinformatics 2019 Apr 17. Epub 2019 Apr 17.

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1093/bioinformatics/btz246DOI Listing
April 2019

MinE-RFE: determine the optimal subset from RFE by minimizing the subset-accuracy-defined energy.

Brief Bioinform 2019 Mar 12. Epub 2019 Mar 12.

School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1093/bib/bbz021DOI Listing
March 2019

Meta-GDBP: a high-level stacked regression model to improve anticancer drug response prediction.

Brief Bioinform 2019 Mar 13. Epub 2019 Mar 13.

School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, China.

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http://dx.doi.org/10.1093/bib/bbz022DOI Listing
March 2019

Supervised Brain Tumor Segmentation Based on Gradient and Context-Sensitive Features.

Front Neurosci 2019 14;13:144. Epub 2019 Mar 14.

School of Computer Software, College of Intelligence and Computing, Tianjin University, Tianjin, China.

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https://www.frontiersin.org/article/10.3389/fnins.2019.00144
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http://dx.doi.org/10.3389/fnins.2019.00144DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6427904PMC
March 2019

Gene2vec: gene subsequence embedding for prediction of mammalian -methyladenosine sites from mRNA.

RNA 2019 02 13;25(2):205-218. Epub 2018 Nov 13.

School of Computer Science and Technology, Harbin Institute of Technology, 150001 Shenzhen, China.

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http://dx.doi.org/10.1261/rna.069112.118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6348985PMC
February 2019

Deep-Resp-Forest: A deep forest model to predict anti-cancer drug response.

Methods 2019 Feb 14. Epub 2019 Feb 14.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China. Electronic address:

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http://dx.doi.org/10.1016/j.ymeth.2019.02.009DOI Listing
February 2019

Empirical comparison and analysis of web-based cell-penetrating peptide prediction tools.

Brief Bioinform 2019 Jan 10. Epub 2019 Jan 10.

College of Intelligence and Computing, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1093/bib/bby124DOI Listing
January 2019

Identifying Plant Pentatricopeptide Repeat Coding Gene/Protein Using Mixed Feature Extraction Methods.

Front Plant Sci 2018 10;9:1961. Epub 2019 Jan 10.

School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China.

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http://dx.doi.org/10.3389/fpls.2018.01961DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6335366PMC
January 2019

mAHTPred: a sequence-based meta-predictor for improving the prediction of anti-hypertensive peptides using effective feature representation.

Bioinformatics 2018 Dec 24. Epub 2018 Dec 24.

Department of Physiology, Ajou University School of Medicine, Suwon, Republic of Korea.

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http://dx.doi.org/10.1093/bioinformatics/bty1047DOI Listing
December 2018

Comparative analysis and prediction of quorum-sensing peptides using feature representation learning and machine learning algorithms.

Brief Bioinform 2018 Oct 31. Epub 2018 Oct 31.

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://fdslive.oup.com/www.oup.com/pdf/production_in_progres
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http://dx.doi.org/10.1093/bib/bby107DOI Listing
October 2018

M6APred-EL: A Sequence-Based Predictor for Identifying N6-methyladenosine Sites Using Ensemble Learning.

Mol Ther Nucleic Acids 2018 Sep 9;12:635-644. Epub 2018 Jul 9.

School of Computer Software, Tianjin University, Tianjin, China; State Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin, China. Electronic address:

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http://dx.doi.org/10.1016/j.omtn.2018.07.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6082921PMC
September 2018

CPPred-FL: a sequence-based predictor for large-scale identification of cell-penetrating peptides by feature representation learning.

Brief Bioinform 2018 Sep 17. Epub 2018 Sep 17.

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1093/bib/bby091DOI Listing
September 2018

Construction, Model-Based Analysis, and Characterization of a Promoter Library for Fine-Tuned Gene Expression in Bacillus subtilis.

ACS Synth Biol 2018 07 10;7(7):1785-1797. Epub 2018 Jul 10.

Key Laboratory of Fermentation Engineering (Ministry of Education), Hubei Key Laboratory of Industrial Microbiology, Hubei Provincial Cooperative Innovation Center of Industrial Fermentation , Hubei University of Technology , Wuhan 430068 , China.

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http://dx.doi.org/10.1021/acssynbio.8b00115DOI Listing
July 2018

Research progress in protein posttranslational modification site prediction.

Brief Funct Genomics 2018 Jul;18(4):220-229

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1093/bfgp/ely039DOI Listing
July 2018

A novel hierarchical selective ensemble classifier with bioinformatics application.

Artif Intell Med 2017 Nov 27;83:82-90. Epub 2017 Feb 27.

School of Medicine, Western Sydney University, Sydney, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.artmed.2017.02.005DOI Listing
November 2017

Improved prediction of protein-protein interactions using novel negative samples, features, and an ensemble classifier.

Artif Intell Med 2017 Nov 4;83:67-74. Epub 2017 Mar 4.

School of Computer Science and Technology, Tianjin University, Tianjin, China. Electronic address:

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http://dx.doi.org/10.1016/j.artmed.2017.03.001DOI Listing
November 2017

Improved detection of DNA-binding proteins via compression technology on PSSM information.

PLoS One 2017 29;12(9):e0185587. Epub 2017 Sep 29.

School of Computer Science and Technology, Tianjin University, Tianjin 300350, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0185587PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5621689PMC
November 2017

SkipCPP-Pred: an improved and promising sequence-based predictor for predicting cell-penetrating peptides.

BMC Genomics 2017 10 16;18(Suppl 7):742. Epub 2017 Oct 16.

School of Computer Science and Technology, Tianjin University, Tianjin, 30050, China.

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https://bmcgenomics.biomedcentral.com/articles/10.1186/s1286
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http://dx.doi.org/10.1186/s12864-017-4128-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5657092PMC
October 2017

Identification of DNA-Binding Proteins Using Mixed Feature Representation Methods.

Molecules 2017 Sep 22;22(10). Epub 2017 Sep 22.

School of Computer Science and Technology, Tianjin University, Tianjin 300350, China.

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http://dx.doi.org/10.3390/molecules22101602DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6151557PMC
September 2017

PhosPred-RF: A Novel Sequence-Based Predictor for Phosphorylation Sites Using Sequential Information Only.

IEEE Trans Nanobioscience 2017 06 31;16(4):240-247. Epub 2017 Jan 31.

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http://dx.doi.org/10.1109/TNB.2017.2661756DOI Listing
June 2017

CPPred-RF: A Sequence-based Predictor for Identifying Cell-Penetrating Peptides and Their Uptake Efficiency.

J Proteome Res 2017 05 26;16(5):2044-2053. Epub 2017 Apr 26.

School of Computer Science and Technology, Tianjin University , Tianjin 300072, China.

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http://dx.doi.org/10.1021/acs.jproteome.7b00019DOI Listing
May 2017

Identifying N-methyladenosine sites using multi-interval nucleotide pair position specificity and support vector machine.

Sci Rep 2017 04 25;7:46757. Epub 2017 Apr 25.

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1038/srep46757DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5404266PMC
April 2017

Fast prediction of protein methylation sites using a sequence-based feature selection technique.

IEEE/ACM Trans Comput Biol Bioinform 2017 Feb 16. Epub 2017 Feb 16.

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http://dx.doi.org/10.1109/TCBB.2017.2670558DOI Listing
February 2017

Recent Progress in Machine Learning-Based Methods for Protein Fold Recognition.

Authors:
Leyi Wei Quan Zou

Int J Mol Sci 2016 Dec 16;17(12). Epub 2016 Dec 16.

School of Computer Science and Technology, Tianjin University, Tianjin 300354, China.

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http://dx.doi.org/10.3390/ijms17122118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5187918PMC
December 2016

A novel machine learning method for cytokine-receptor interaction prediction.

Comb Chem High Throughput Screen 2016 ;19(2):144-52

Information and Computer Engineering College, Northeast Forestry University, Harbin, Heilongjiang, P.R.China.

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September 2016

Enhanced Protein Fold Prediction Method Through a Novel Feature Extraction Technique.

IEEE Trans Nanobioscience 2015 Sep;14(6):649-59

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http://dx.doi.org/10.1109/TNB.2015.2450233DOI Listing
September 2015

Briefing in family characteristics of microRNAs and their applications in cancer research.

Biochim Biophys Acta 2014 Jan 14;1844(1 Pt B):191-7. Epub 2013 Aug 14.

School of Information Science and Technology, Xiamen University, Xiamen, 361005 Fujian, PR China.

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http://dx.doi.org/10.1016/j.bbapap.2013.08.002DOI Listing
January 2014

Computational approaches in detecting non- coding RNA.

Curr Genomics 2013 Sep;14(6):371-7

School of Information Science and Technology, Xiamen University, Xiamen 361005, China.

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http://dx.doi.org/10.2174/13892029113149990005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3861888PMC
September 2013