Publications by authors named "Leonid Peshkin"

33Publications

A cell type annotation Jamboree-Revival of а communal science forum.

Genesis 2020 Sep 25;58(9):e23383. Epub 2020 Jun 25.

Systems Biology, Harvard Medical School, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1002/dvg.23383DOI Listing
September 2020

YAP regulates cell size and growth dynamics via non-cell autonomous mediators.

Elife 2020 Jan 9;9. Epub 2020 Jan 9.

Department of Systems Biology, Harvard Medical School, Boston, United States.

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http://dx.doi.org/10.7554/eLife.53404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6989120PMC
January 2020

Quantitative Proteomics Reveals Remodeling of Protein Repertoire Across Life Phases of Daphnia pulex.

Proteomics 2019 12 10;19(24):e1900155. Epub 2019 Dec 10.

Department of Biological Sciences, East Tennessee State University, Johnson City, TN, 31714, USA.

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http://dx.doi.org/10.1002/pmic.201900155DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7017786PMC
December 2019

Bayesian Confidence Intervals for Multiplexed Proteomics Integrate Ion-statistics with Peptide Quantification Concordance.

Mol Cell Proteomics 2019 10 16;18(10):2108-2120. Epub 2019 Jul 16.

Department of Molecular Biology & the Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544

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http://dx.doi.org/10.1074/mcp.TIR119.001317DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6773559PMC
October 2019

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution.

Science 2018 06 26;360(6392). Epub 2018 Apr 26.

Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1126/science.aar5780DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6038144PMC
June 2018

Proteomics of phosphorylation and protein dynamics during fertilization and meiotic exit in the egg.

Proc Natl Acad Sci U S A 2017 12 28;114(50):E10838-E10847. Epub 2017 Nov 28.

Department of Systems Biology, Harvard Medical School, Boston, MA 02115;

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http://dx.doi.org/10.1073/pnas.1709207114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5740657PMC
December 2017

Transcriptomic insights into genetic diversity of protein-coding genes in X. laevis.

Dev Biol 2017 04 7;424(2):181-188. Epub 2017 Mar 7.

Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1016/j.ydbio.2017.02.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5405699PMC
April 2017

Luteinizing Hormone is an effective replacement for hCG to induce ovulation in Xenopus.

Dev Biol 2017 06 2;426(2):442-448. Epub 2016 Jun 2.

National Xenopus Resource, Marine Biological Laboratory, Woods Hole, MA 02543, United States. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2016.05.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5135639PMC
June 2017

The Nuclear Proteome of a Vertebrate.

Curr Biol 2015 Oct 1;25(20):2663-71. Epub 2015 Oct 1.

Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2015.08.047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4618192PMC
October 2015

A noncanonical Frizzled2 pathway regulates epithelial-mesenchymal transition and metastasis.

Cell 2014 Nov;159(4):844-56

Department of Systems Biology, Harvard Medical School, 200 Longwood Avenue, Warren Alpert 524, Boston, MA 02115, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674140135
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http://dx.doi.org/10.1016/j.cell.2014.10.032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4243058PMC
November 2014

Deep proteomics of the Xenopus laevis egg using an mRNA-derived reference database.

Curr Biol 2014 Jul 19;24(13):1467-1475. Epub 2014 Jun 19.

Department of Systems Biology, Harvard Medical School, 02115 Boston, MA, USA.

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http://dx.doi.org/10.1016/j.cub.2014.05.044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4090281PMC
July 2014

Exploiting polypharmacology for drug target deconvolution.

Proc Natl Acad Sci U S A 2014 Apr 19;111(13):5048-53. Epub 2014 Mar 19.

Department of Systems Biology, Harvard Medical School, Boston, MA 02115.

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http://dx.doi.org/10.1073/pnas.1403080111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3977247PMC
April 2014

Accurate multiplexed proteomics at the MS2 level using the complement reporter ion cluster.

Anal Chem 2012 Nov 25;84(21):9214-21. Epub 2012 Oct 25.

Department of Cell Biology, Harvard Medical School, Harvard University, Boston, Massachusetts 02115, United States.

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http://dx.doi.org/10.1021/ac301962sDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3771681PMC
November 2012

Vascular disrupting agent drug classes differ in effects on the cytoskeleton.

PLoS One 2012 24;7(7):e40177. Epub 2012 Jul 24.

Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0040177PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3404093PMC
April 2013

Toward an unbiased evolutionary platform for unraveling Xenopus developmental gene networks.

Genesis 2012 Mar 5;50(3):186-91. Epub 2012 Jan 5.

Department of Biology, Technion-Israel Institute of Technology, Haifa, Israel.

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http://dx.doi.org/10.1002/dvg.20811DOI Listing
March 2012

Remodeling of the metabolome during early frog development.

PLoS One 2011 Feb 4;6(2):e16881. Epub 2011 Feb 4.

Carl Icahn Laboratory, Department of Chemistry and Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0016881PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035664PMC
February 2011

Effects of temperature on gene expression in embryos of the coral Montastraea faveolata.

BMC Genomics 2009 Dec 23;10:627. Epub 2009 Dec 23.

1Red Sea Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.

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http://dx.doi.org/10.1186/1471-2164-10-627DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2807443PMC
December 2009

Roundup: a multi-genome repository of orthologs and evolutionary distances.

Bioinformatics 2006 Aug 15;22(16):2044-6. Epub 2006 Jun 15.

The Center for Biomedical Informatics & Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1093/bioinformatics/btl286DOI Listing
August 2006