Lee Sael

Lee Sael

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Lee Sael

Lee Sael

Publications by authors named "Lee Sael"

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Impact of structural prior knowledge in SNV prediction: Towards causal variant finding in rare disease.

PLoS One 2018 28;13(9):e0204101. Epub 2018 Sep 28.

Department of Computer Science and Engineering, Seoul National University, Seoul, Republic of Korea.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0204101PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6161878PMC
March 2019

SNeCT: Scalable Network Constrained Tucker Decomposition for Multi-Platform Data Profiling.

IEEE/ACM Trans Comput Biol Bioinform 2019 Mar 19. Epub 2019 Mar 19.

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https://ieeexplore.ieee.org/document/8669882/
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http://dx.doi.org/10.1109/TCBB.2019.2906205DOI Listing
March 2019

CTD: Fast, accurate, and interpretable method for static and dynamic tensor decompositions.

PLoS One 2018 25;13(7):e0200579. Epub 2018 Jul 25.

Department of Computer Science and Engineering, Seoul National University, Seoul, Republic of Korea.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0200579PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6059458PMC
January 2019

Introduction to Selected Papers from GIW2017.

Authors:
Lee Sael

J Bioinform Comput Biol 2018 06;16(3):1802003

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https://www.worldscientific.com/doi/abs/10.1142/S02197200180
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http://dx.doi.org/10.1142/S0219720018020031DOI Listing
June 2018

Review on Graph Clustering and Subgraph Similarity Based Analysis of Neurological Disorders.

Int J Mol Sci 2016 Jun 1;17(6). Epub 2016 Jun 1.

Department of Computer Science, Stony Brook University, Stony Brook, NY 11794, USA.

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http://dx.doi.org/10.3390/ijms17060862DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926396PMC
June 2016

A mutation profile for top-k patient search exploiting Gene-Ontology and orthogonal non-negative matrix factorization.

Bioinformatics 2015 Nov 23;31(22):3653-9. Epub 2015 Jul 23.

Department of Computer Science and Engineering, POSTECH, Pohang, South Korea and.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btv409DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4672174PMC
November 2015

LMDS-based approach for efficient top-k local ligand-binding site search.

Int J Data Min Bioinform 2015 ;12(4):417-33

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November 2015

Binding ligand prediction for proteins using partial matching of local surface patches.

Int J Mol Sci 2010 6;11(12):5009-26. Epub 2010 Dec 6.

Department of Computer Science, Purdue University, West Lafayette, IN 47907, USA; E-Mail:

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http://dx.doi.org/10.3390/ijms11125009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3100846PMC
June 2015

3D-SURFER 2.0: web platform for real-time search and characterization of protein surfaces.

Methods Mol Biol 2014 ;1137:105-17

Department of Biological Sciences, Purdue University, West Lafayette, IN, USA.

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http://link.springer.com/10.1007/978-1-4939-0366-5_8
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http://dx.doi.org/10.1007/978-1-4939-0366-5_8DOI Listing
October 2014

Mass spectrometry coupled experiments and protein structure modeling methods.

Authors:
Jaewoo Pi Lee Sael

Int J Mol Sci 2013 Oct 15;14(10):20635-57. Epub 2013 Oct 15.

Department of Computer Science, Stony Brook University, Stony Brook, NY 11794, USA.

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http://dx.doi.org/10.3390/ijms141020635DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3821635PMC
October 2013

Efficient protein structure search using indexing methods.

BMC Med Inform Decis Mak 2013 5;13 Suppl 1:S8. Epub 2013 Apr 5.

POSTECH, Pohang, South Korea.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3618241PMC
July 2013

Structure- and sequence-based function prediction for non-homologous proteins.

J Struct Funct Genomics 2012 Jun 22;13(2):111-23. Epub 2012 Jan 22.

Department of Computer Science, Purdue University, West Lafayette, IN 47907, USA.

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http://dx.doi.org/10.1007/s10969-012-9126-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3375349PMC
June 2012

Detecting local ligand-binding site similarity in nonhomologous proteins by surface patch comparison.

Proteins 2012 Apr 24;80(4):1177-95. Epub 2012 Jan 24.

Department of Computer Science, Purdue University, West Lafayette, Indiana 47907, USA.

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http://dx.doi.org/10.1002/prot.24018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3294165PMC
April 2012

Constructing patch-based ligand-binding pocket database for predicting function of proteins.

BMC Bioinformatics 2012 Mar 13;13 Suppl 2:S7. Epub 2012 Mar 13.

Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.

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http://dx.doi.org/10.1186/1471-2105-13-S2-S7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3375630PMC
March 2012

Molecular surface representation using 3D Zernike descriptors for protein shape comparison and docking.

Curr Protein Pept Sci 2011 Sep;12(6):520-30

Department of Biological Sciences, College of Science, Purdue University, West Lafayette, IN 47907, USA.

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September 2011

Improved protein surface comparison and application to low-resolution protein structure data.

BMC Bioinformatics 2010 Dec 14;11 Suppl 11:S2. Epub 2010 Dec 14.

Department of Computer Science, Purdue University, West Lafayette, IN, 47907, USA.

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http://dx.doi.org/10.1186/1471-2105-11-S11-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3024873PMC
December 2010

Real-time ligand binding pocket database search using local surface descriptors.

Proteins 2010 Jul;78(9):2007-28

Computer Science Department, Ecole Normale Supérieure de Cachan, 94235 Cachan cedex, Britanny, France.

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http://dx.doi.org/10.1002/prot.22715DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3009464PMC
July 2010

Protein-protein docking using region-based 3D Zernike descriptors.

BMC Bioinformatics 2009 Dec 9;10:407. Epub 2009 Dec 9.

Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, USA.

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http://dx.doi.org/10.1186/1471-2105-10-407DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2800122PMC
December 2009

3D-SURFER: software for high-throughput protein surface comparison and analysis.

Bioinformatics 2009 Nov 16;25(21):2843-4. Epub 2009 Sep 16.

Department of Biological Sciences, College of Science, Purdue University, West Lafayette, IN 47907, USA.

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http://dx.doi.org/10.1093/bioinformatics/btp542DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2912717PMC
November 2009

Potential for protein surface shape analysis using spherical harmonics and 3D Zernike descriptors.

Cell Biochem Biophys 2009 12;54(1-3):23-32. Epub 2009 Jun 12.

Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.

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http://dx.doi.org/10.1007/s12013-009-9051-xDOI Listing
August 2009

Rapid comparison of properties on protein surface.

Proteins 2008 Oct;73(1):1-10

Department of Computer Science, College of Science, Purdue University, West Lafayette, Indiana 47907, USA.

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http://dx.doi.org/10.1002/prot.22141DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2574582PMC
October 2008

Fast protein tertiary structure retrieval based on global surface shape similarity.

Proteins 2008 Sep;72(4):1259-73

Department of Computer Science, College of Science, Purdue University, West Lafayette, Indiana 47907, USA.

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http://doi.wiley.com/10.1002/prot.22030
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http://dx.doi.org/10.1002/prot.22030DOI Listing
September 2008