Publications by authors named "Lauris Kaplinski"

22Publications

Primer3_masker: integrating masking of template sequence with primer design software.

Bioinformatics 2018 06;34(11):1937-1938

Department of Bioinformatics, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.

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http://dx.doi.org/10.1093/bioinformatics/bty036DOI Listing
June 2018

FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads.

Sci Rep 2017 05 31;7(1):2537. Epub 2017 May 31.

Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.

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http://dx.doi.org/10.1038/s41598-017-02487-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5451431PMC
May 2017

GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists.

Gigascience 2015 3;4:58. Epub 2015 Dec 3.

Department of Bioinformatics, University of Tartu, Riia 23, Tartu, 51010 Estonia ; Estonian Biocentre, Riia 23B, Tartu, 51010 Estonia.

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http://dx.doi.org/10.1186/s13742-015-0097-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4669650PMC
July 2016

Haplotype phasing and inheritance of copy number variants in nuclear families.

PLoS One 2015 8;10(4):e0122713. Epub 2015 Apr 8.

Department of Bioinformatics, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia; Estonian Biocentre, Tartu, Estonia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0122713PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390228PMC
March 2016

MultiPLX: automatic grouping and evaluation of PCR primers.

Methods Mol Biol 2015 ;1275:127-42

Department of Bioinformatics, University of Tartu, Tartu, Estonia.

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http://dx.doi.org/10.1007/978-1-4939-2365-6_9DOI Listing
December 2015

Fast masking of repeated primer binding sites in eukaryotic genomes.

Methods Mol Biol 2015 ;1275:1-16

Department of Bioinformatics, University of Tartu, Riia 23, Tartu, 51010, Estonia.

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http://dx.doi.org/10.1007/978-1-4939-2365-6_1DOI Listing
December 2015

Position-specific scoring matrix and hidden Markov model complement each other for the prediction of conopeptide superfamilies.

Biochim Biophys Acta 2013 Apr 22;1834(4):717-24. Epub 2013 Jan 22.

Atheris Laboratories, Case Postale 314, CH-1233 Bernex-Geneva, Switzerland.

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http://dx.doi.org/10.1016/j.bbapap.2012.12.015DOI Listing
April 2013

ConoDictor: a tool for prediction of conopeptide superfamilies.

Nucleic Acids Res 2012 Jul 31;40(Web Server issue):W238-41. Epub 2012 May 31.

Atheris Laboratories, Case postale 314, CH-1233 Bernex-Geneva, Switzerland.

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http://dx.doi.org/10.1093/nar/gks337DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394318PMC
July 2012

Label-free, multiplexed detection of bacterial tmRNA using silicon photonic microring resonators.

Biosens Bioelectron 2012 Jun-Jul;36(1):56-61. Epub 2012 Apr 6.

Department of Biotechnology, Institute of Molecular and Cellular Biology, University of Tartu, Tartu, Estonia.

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http://dx.doi.org/10.1016/j.bios.2012.03.037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367093PMC
October 2012

Identification and classification of conopeptides using profile Hidden Markov Models.

Biochim Biophys Acta 2012 Mar 30;1824(3):488-92. Epub 2011 Dec 30.

Estonian Biocentre, Tartu, Estonia.

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http://dx.doi.org/10.1016/j.bbapap.2011.12.004DOI Listing
March 2012

Detection of NASBA amplified bacterial tmRNA molecules on SLICSel designed microarray probes.

BMC Biotechnol 2011 Feb 28;11:17. Epub 2011 Feb 28.

Dept, of Biotechnology, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.

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http://dx.doi.org/10.1186/1472-6750-11-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051898PMC
February 2011

Detection of tmRNA molecules on microarrays at low temperatures using helper oligonucleotides.

BMC Biotechnol 2010 Apr 28;10:34. Epub 2010 Apr 28.

Department of Bioinformatics, Institute of Molecular and Cell Biology, University of Tartu, Riia 23, Tartu, 51010, Estonia.

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http://dx.doi.org/10.1186/1472-6750-10-34DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2873282PMC
April 2010

Fluorescent labeling of NASBA amplified tmRNA molecules for microarray applications.

BMC Biotechnol 2009 May 15;9:45. Epub 2009 May 15.

Department of Biotechnology, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.

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http://dx.doi.org/10.1186/1472-6750-9-45DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2685129PMC
May 2009

MultiPLX: automatic grouping and evaluation of PCR primers.

Methods Mol Biol 2007 ;402:287-304

Department of Bioinformatics at University of Tartu, Estonia.

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http://dx.doi.org/10.1007/978-1-59745-528-2_14DOI Listing
November 2007

Fast masking of repeated primer binding sites in eukaryotic genomes.

Methods Mol Biol 2007 ;402:201-18

Department of Bioinformatics at University of Tartu, Estonia.

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http://dx.doi.org/10.1007/978-1-59745-528-2_10DOI Listing
November 2007

The whole genome tagSNP selection and transferability among HapMap populations.

Pac Symp Biocomput 2006 :535-43

Department of Bioinformatics, University of Tartu, Riia str. 23 Tartu, 51010, Estonia.

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January 2007

GENOMEMASKER package for designing unique genomic PCR primers.

BMC Bioinformatics 2006 Mar 27;7:172. Epub 2006 Mar 27.

Department of Bioinformatics, University of Tartu, Tartu, Estonia.

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http://dx.doi.org/10.1186/1471-2105-7-172DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1450303PMC
March 2006

MultiPLX: automatic grouping and evaluation of PCR primers.

Bioinformatics 2005 Apr 14;21(8):1701-2. Epub 2004 Dec 14.

Department of Bioinformatics, University of Tartu, Tartu, Estonia.

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http://dx.doi.org/10.1093/bioinformatics/bti219DOI Listing
April 2005