Publications by authors named "Laurent A F Frantz"

29Publications

Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages.

Curr Biol 2020 Oct 27. Epub 2020 Oct 27.

Section for Evolutionary Genomics, The GLOBE Institute, University of Copenhagen, Copenhagen, Denmark; Center for Evolutionary Hologenomics, The GLOBE Institute, University of Copenhagen, Copenhagen, Denmark; Bioinformatics, Department of Health Technology, Technical University of Denmark, Lyngby, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2020.10.002DOI Listing
October 2020

Animal domestication in the era of ancient genomics.

Nat Rev Genet 2020 08 7;21(8):449-460. Epub 2020 Apr 7.

Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse, CNRS UMR 5288, Université de Toulouse, Université Paul Sabatier, Toulouse, France.

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http://dx.doi.org/10.1038/s41576-020-0225-0DOI Listing
August 2020

Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe.

Authors:
Laurent A F Frantz James Haile Audrey T Lin Amelie Scheu Christina Geörg Norbert Benecke Michelle Alexander Anna Linderholm Victoria E Mullin Kevin G Daly Vincent M Battista Max Price Kurt J Gron Panoraia Alexandri Rose-Marie Arbogast Benjamin Arbuckle Adrian Bӑlӑşescu Ross Barnett László Bartosiewicz Gennady Baryshnikov Clive Bonsall Dušan Borić Adina Boroneanţ Jelena Bulatović Canan Çakirlar José-Miguel Carretero John Chapman Mike Church Richard Crooijmans Bea De Cupere Cleia Detry Vesna Dimitrijevic Valentin Dumitraşcu Louis du Plessis Ceiridwen J Edwards Cevdet Merih Erek Aslı Erim-Özdoğan Anton Ervynck Domenico Fulgione Mihai Gligor Anders Götherström Lionel Gourichon Martien A M Groenen Daniel Helmer Hitomi Hongo Liora K Horwitz Evan K Irving-Pease Ophélie Lebrasseur Joséphine Lesur Caroline Malone Ninna Manaseryan Arkadiusz Marciniak Holley Martlew Marjan Mashkour Roger Matthews Giedre Motuzaite Matuzeviciute Sepideh Maziar Erik Meijaard Tom McGovern Hendrik-Jan Megens Rebecca Miller Azadeh Fatemeh Mohaseb Jörg Orschiedt David Orton Anastasia Papathanasiou Mike Parker Pearson Ron Pinhasi Darko Radmanović François-Xavier Ricaut Mike Richards Richard Sabin Lucia Sarti Wolfram Schier Shiva Sheikhi Elisabeth Stephan John R Stewart Simon Stoddart Antonio Tagliacozzo Nenad Tasić Katerina Trantalidou Anne Tresset Cristina Valdiosera Youri van den Hurk Sophie Van Poucke Jean-Denis Vigne Alexander Yanevich Andrea Zeeb-Lanz Alexandros Triantafyllidis M Thomas P Gilbert Jörg Schibler Peter Rowley-Conwy Melinda Zeder Joris Peters Thomas Cucchi Daniel G Bradley Keith Dobney Joachim Burger Allowen Evin Linus Girdland-Flink Greger Larson

Proc Natl Acad Sci U S A 2019 08 12;116(35):17231-17238. Epub 2019 Aug 12.

The Palaeogenomics & Bio-Archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford OX1 3TG, United Kingdom;

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http://dx.doi.org/10.1073/pnas.1901169116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6717267PMC
August 2019

ABLE: blockwise site frequency spectra for inferring complex population histories and recombination.

Genome Biol 2018 09 25;19(1):145. Epub 2018 Sep 25.

Institute of Evolutionary Biology, University of Edinburgh, King's Buildings, Edinburgh, EH9 3FL, UK.

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http://dx.doi.org/10.1186/s13059-018-1517-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6156964PMC
September 2018

Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research.

mSystems 2018 Jul-Aug;3(4). Epub 2018 Jul 17.

Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, Germany.

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http://dx.doi.org/10.1128/mSystems.00080-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6050634PMC
July 2018

Rabbits and the Specious Origins of Domestication.

Trends Ecol Evol 2018 03 14;33(3):149-152. Epub 2018 Feb 14.

The Palaeogenomics and Bio-Archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford, UK. Electronic address:

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http://dx.doi.org/10.1016/j.tree.2017.12.009DOI Listing
March 2018

Inferring Bottlenecks from Genome-Wide Samples of Short Sequence Blocks.

Genetics 2015 Nov 3;201(3):1157-69. Epub 2015 Sep 3.

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3FL, United Kingdom.

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http://dx.doi.org/10.1534/genetics.115.179861DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4649642PMC
November 2015

Copy number variation in the speciation of pigs: a possible prominent role for olfactory receptors.

BMC Genomics 2015 Apr 22;16:330. Epub 2015 Apr 22.

Animal Breeding and Genomics Centre, Wageningen University, 6700 AH, Wageningen, The Netherlands.

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http://dx.doi.org/10.1186/s12864-015-1449-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4413995PMC
April 2015

Evolution of Tibetan wild boars.

Nat Genet 2015 Mar;47(3):188-9

Animal Breeding and Genomics Group, Wageningen University, Wageningen, the Netherlands.

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http://dx.doi.org/10.1038/ng.3197DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4455000PMC
March 2015

Testing models of speciation from genome sequences: divergence and asymmetric admixture in Island South-East Asian Sus species during the Plio-Pleistocene climatic fluctuations.

Mol Ecol 2014 11 5;23(22):5566-74. Epub 2014 Nov 5.

Animal Breeding and Genomics Group, Wageningen University, De Elst 1, Wageningen, WD, 6708, The Netherlands.

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http://dx.doi.org/10.1111/mec.12958DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4245187PMC
November 2014

Untangling the hybrid nature of modern pig genomes: a mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations.

Mol Ecol 2014 Aug 16;23(16):4089-102. Epub 2014 Jun 16.

Animal Breeding and Genomics Centre, Wageningen University, De Elst 1 Zodiac, P.O. Box 338, Wageningen, 6708WD, the Netherlands.

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http://dx.doi.org/10.1111/mec.12807DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4225523PMC
August 2014

Neandertal admixture in Eurasia confirmed by maximum-likelihood analysis of three genomes.

Genetics 2014 Apr 13;196(4):1241-51. Epub 2014 Feb 13.

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, EH9 3JT, United Kingdom.

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http://dx.doi.org/10.1534/genetics.114.162396DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3982695PMC
April 2014

Analyses of pig genomes provide insight into porcine demography and evolution.

Authors:
Martien A M Groenen Alan L Archibald Hirohide Uenishi Christopher K Tuggle Yasuhiro Takeuchi Max F Rothschild Claire Rogel-Gaillard Chankyu Park Denis Milan Hendrik-Jan Megens Shengting Li Denis M Larkin Heebal Kim Laurent A F Frantz Mario Caccamo Hyeonju Ahn Bronwen L Aken Anna Anselmo Christian Anthon Loretta Auvil Bouabid Badaoui Craig W Beattie Christian Bendixen Daniel Berman Frank Blecha Jonas Blomberg Lars Bolund Mirte Bosse Sara Botti Zhan Bujie Megan Bystrom Boris Capitanu Denise Carvalho-Silva Patrick Chardon Celine Chen Ryan Cheng Sang-Haeng Choi William Chow Richard C Clark Christopher Clee Richard P M A Crooijmans Harry D Dawson Patrice Dehais Fioravante De Sapio Bert Dibbits Nizar Drou Zhi-Qiang Du Kellye Eversole João Fadista Susan Fairley Thomas Faraut Geoffrey J Faulkner Katie E Fowler Merete Fredholm Eric Fritz James G R Gilbert Elisabetta Giuffra Jan Gorodkin Darren K Griffin Jennifer L Harrow Alexander Hayward Kerstin Howe Zhi-Liang Hu Sean J Humphray Toby Hunt Henrik Hornshøj Jin-Tae Jeon Patric Jern Matthew Jones Jerzy Jurka Hiroyuki Kanamori Ronan Kapetanovic Jaebum Kim Jae-Hwan Kim Kyu-Won Kim Tae-Hun Kim Greger Larson Kyooyeol Lee Kyung-Tai Lee Richard Leggett Harris A Lewin Yingrui Li Wansheng Liu Jane E Loveland Yao Lu Joan K Lunney Jian Ma Ole Madsen Katherine Mann Lucy Matthews Stuart McLaren Takeya Morozumi Michael P Murtaugh Jitendra Narayan Dinh Truong Nguyen Peixiang Ni Song-Jung Oh Suneel Onteru Frank Panitz Eung-Woo Park Hong-Seog Park Geraldine Pascal Yogesh Paudel Miguel Perez-Enciso Ricardo Ramirez-Gonzalez James M Reecy Sandra Rodriguez-Zas Gary A Rohrer Lauretta Rund Yongming Sang Kyle Schachtschneider Joshua G Schraiber John Schwartz Linda Scobie Carol Scott Stephen Searle Bertrand Servin Bruce R Southey Goran Sperber Peter Stadler Jonathan V Sweedler Hakim Tafer Bo Thomsen Rashmi Wali Jian Wang Jun Wang Simon White Xun Xu Martine Yerle Guojie Zhang Jianguo Zhang Jie Zhang Shuhong Zhao Jane Rogers Carol Churcher Lawrence B Schook

Nature 2012 Nov;491(7424):393-8

Animal Breeding and Genomics Centre, Wageningen University, De Elst 1, 6708 WD, Wageningen, The Netherlands.

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http://www.umass.edu/vetimm/docs/Groenen_etal_2012.pdf
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http://dx.doi.org/10.1038/nature11622DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3566564PMC
November 2012