Lars J Jensen

Lars J Jensen

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Lars J Jensen

Publications by authors named "Lars J Jensen"

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Comparing 22 Popular Phosphoproteomics Pipelines for Peptide Identification and Site Localization.

J Proteome Res 2020 Feb 4. Epub 2020 Feb 4.

Novo Nordisk Foundation Center for Protein Research , University of Copenhagen , Copenhagen 2200 , Denmark.

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http://dx.doi.org/10.1021/acs.jproteome.9b00679DOI Listing
February 2020

Analysis of Predicted Host-Parasite Interactomes Reveals Commonalities and Specificities Related to Parasitic Lifestyle and Tissues Tropism.

Front Immunol 2019 13;10:212. Epub 2019 Feb 13.

Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.3389/fimmu.2019.00212DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6381214PMC
January 2020

Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites.

Cell 2019 Oct;179(2):543-560.e26

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Faculty of Health and Medical Sciences, Blegdamsvej 3b, DK-2200 Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.09.008DOI Listing
October 2019

Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models.

J Proteome Res 2019 06 22;18(6):2385-2396. Epub 2019 May 22.

Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Science , University of Copenhagen , Blegdamsvej 3B , DK-2200 Copenhagen , Denmark.

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http://dx.doi.org/10.1021/acs.jproteome.8b00499DOI Listing
June 2019

Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.

J Proteome Res 2019 02 5;18(2):623-632. Epub 2018 Dec 5.

Novo Nordisk Foundation Center for Protein Research , University of Copenhagen , 2200 Copenhagen N, Denmark.

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http://dx.doi.org/10.1021/acs.jproteome.8b00702DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6800166PMC
February 2019

Quantitative metaproteomics of medieval dental calculus reveals individual oral health status.

Nat Commun 2018 11 20;9(1):4744. Epub 2018 Nov 20.

Proteomics Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200, Copenhagen N, Denmark.

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http://www.nature.com/articles/s41467-018-07148-3
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http://dx.doi.org/10.1038/s41467-018-07148-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6246597PMC
November 2018

Role of age, Rho-kinase 2 expression, and G protein-mediated signaling in the myogenic response in mouse small mesenteric arteries.

Physiol Rep 2018 09;6(17):e13863

Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg C, Copenhagen, Denmark.

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http://doi.wiley.com/10.14814/phy2.13863
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http://dx.doi.org/10.14814/phy2.13863DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6129776PMC
September 2018

Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation.

Cell Rep 2018 08;24(9):2493-2505.e4

Proteomics Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247183120
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http://dx.doi.org/10.1016/j.celrep.2018.07.083DOI Listing
August 2018

Site-specific characterization of endogenous SUMOylation across species and organs.

Nat Commun 2018 06 25;9(1):2456. Epub 2018 Jun 25.

Proteomics Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200, Copenhagen, Denmark.

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http://dx.doi.org/10.1038/s41467-018-04957-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6018634PMC
June 2018

Structure-based discovery of novel US28 small molecule ligands with different modes of action.

Chem Biol Drug Des 2017 03 28;89(3):289-296. Epub 2016 Sep 28.

Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1111/cbdd.12848DOI Listing
March 2017

Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation.

Nat Struct Mol Biol 2017 03 23;24(3):325-336. Epub 2017 Jan 23.

Department of Proteomics, Novo Nordisk Foundation Center for Protein Research (NNF-CPR), Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1038/nsmb.3366DOI Listing
March 2017

miRNAs in human subcutaneous adipose tissue: Effects of weight loss induced by hypocaloric diet and exercise.

Obesity (Silver Spring) 2017 03 3;25(3):572-580. Epub 2017 Feb 3.

Xlab, Center for Healthy Aging, Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1002/oby.21765DOI Listing
March 2017

Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer.

Cell Rep 2017 03;18(13):3242-3256

Proteomics Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.03.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5382236PMC
March 2017

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.

Nucleic Acids Res 2017 01 18;45(D1):D362-D368. Epub 2016 Oct 18.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, 8057 Zurich, Switzerland

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http://dx.doi.org/10.1093/nar/gkw937DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210637PMC
January 2017

Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls.

PeerJ 2016 14;4:e2433. Epub 2016 Sep 14.

Proteomics Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.7717/peerj.2433DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5028799PMC
September 2016

From Phosphosites to Kinases.

Methods Mol Biol 2016 ;1355:307-21

Disease Systems Biology Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3b, Bldg. 6.2, 2200, Copenhagen, Denmark.

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http://dx.doi.org/10.1007/978-1-4939-3049-4_21DOI Listing
August 2016

Search Databases and Statistics: Pitfalls and Best Practices in Phosphoproteomics.

Methods Mol Biol 2016 ;1355:323-39

Disease Systems Biology Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3b, Bldg. 6.2, 2200, Copenhagen, Denmark.

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http://dx.doi.org/10.1007/978-1-4939-3049-4_22DOI Listing
August 2016

Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells.

Sci Signal 2016 08 30;9(443):rs9. Epub 2016 Aug 30.

Department of Proteomics, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, DK-2200 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/scisignal.aaf7329DOI Listing
August 2016

No apparent role for T-type Ca²⁺ channels in renal autoregulation.

Pflugers Arch 2016 Apr 14;468(4):541-50. Epub 2015 Dec 14.

Department of Biomedical Sciences, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3, DK-2200, Copenhagen N, Denmark.

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http://dx.doi.org/10.1007/s00424-015-1770-9DOI Listing
April 2016

Hepatic oxidative stress, genotoxicity and vascular dysfunction in lean or obese Zucker rats.

PLoS One 2015 4;10(3):e0118773. Epub 2015 Mar 4.

Section of Environmental Health, Department of Public Health, University of Copenhagen, Øster Farimagsgade 5A, DK-1014 Copenhagen K, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0118773PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4349582PMC
December 2015

HOODS: finding context-specific neighborhoods of proteins, chemicals and diseases.

PeerJ 2015 30;3:e1057. Epub 2015 Jun 30.

The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen , Copenhagen N , Denmark.

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http://dx.doi.org/10.7717/peerj.1057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4493695PMC
July 2015

Predicting kinase activity in angiotensin receptor phosphoproteomes based on sequence-motifs and interactions.

PLoS One 2014 10;9(4):e94672. Epub 2014 Apr 10.

Department of Clinical Biochemistry, Glostrup Research Institute, Glostrup Hospital, Glostrup, Denmark; Cellular and Metabolic Research Section, Department of Biomedical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0094672PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3983226PMC
June 2015

Acetylation site specificities of lysine deacetylase inhibitors in human cells.

Nat Biotechnol 2015 Apr 9;33(4):415-23. Epub 2015 Mar 9.

Department of Proteomics, The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1038/nbt.3130DOI Listing
April 2015

Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation.

Sci Signal 2015 Apr 28;8(374):ra40. Epub 2015 Apr 28.

Proteomics Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, DK-2200 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/scisignal.2005769DOI Listing
April 2015

STRING v10: protein-protein interaction networks, integrated over the tree of life.

Nucleic Acids Res 2015 Jan 28;43(Database issue):D447-52. Epub 2014 Oct 28.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, 8057 Zurich, Switzerland

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http://dx.doi.org/10.1093/nar/gku1003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383874PMC
January 2015

Functional network analysis of obese and lean Göttingen minipigs elucidates changes in oxidative and inflammatory networks in obese pigs.

Pflugers Arch 2014 Dec 5;466(12):2167-76. Epub 2014 Mar 5.

Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Universitetsparken 2, 2100, Copenhagen, Denmark,

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http://dx.doi.org/10.1007/s00424-014-1486-2DOI Listing
December 2014

Proteomic analysis of arginine methylation sites in human cells reveals dynamic regulation during transcriptional arrest.

Mol Cell Proteomics 2014 Aug 21;13(8):2072-88. Epub 2014 Feb 21.

From the ‡Department of Proteomics, The Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, DK-2200 Copenhagen, Denmark;

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http://dx.doi.org/10.1074/mcp.O113.032748DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4125738PMC
August 2014

STITCH 4: integration of protein-chemical interactions with user data.

Nucleic Acids Res 2014 Jan 28;42(Database issue):D401-7. Epub 2013 Nov 28.

Biotechnology Center, TU Dresden, 01062 Dresden, Germany, Institute of Molecular Life Sciences, University of Zurich and Swiss Institute of Bioinformatics, Winterthurerstrasse 190, 8057 Zurich, Switzerland, Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen N, Denmark, European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and Max-Delbrück-Centre for Molecular Medicine, Robert-Rössle-Strasse 10, 13092 Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gkt1207DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964996PMC
January 2014

eggNOG v4.0: nested orthology inference across 3686 organisms.

Nucleic Acids Res 2014 Jan 1;42(Database issue):D231-9. Epub 2013 Dec 1.

European Molecular Biology Laboratory, Computational Biology Unit, Meyerhofstrasse 1, 69117 Heidelberg, Germany, University of Zurich and Swiss Institute of Bioinformatics, Institute of Molecular Life Sciences, Winterthurerstrasse 190, 8057 Zurich, Switzerland, Institute for Systems Biology, 401 Terry Avenue North, Seattle, WA 98109-5234, USA, Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), C/Dr. Aiguader 88, 08003 Barcelona, Spain, Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain, CUBE-Division of Computational Systems Biology, Department of Microbiology and Ecosystem Science, University of Vienna, Althanstraße 14, 1090 Vienna, Austria, Institute of Biological, Environmental & Rural Sciences, Aberystwyth University, Penglais, Aberystwyth, Ceredigion, SY23 3FG, UK, Biotechnology Center, TU Dresden, 01062 Dresden, Germany, Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200, Copenhagen N, Denmark and Max-Delbrück-Centre for Molecular Medicine, Robert-Rössle-Strasse 10, 13092 Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gkt1253DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964997PMC
January 2014

TIMP-1 increases expression and phosphorylation of proteins associated with drug resistance in breast cancer cells.

J Proteome Res 2013 Sep 21;12(9):4136-51. Epub 2013 Aug 21.

Institute of Veterinary Disease Biology, Faculty of Health and Medical Sciences and Sino-Danish Breast Cancer Research Centre, University of Copenhagen, Dyrlægevej 88, 1., 1870 Frederiksberg C, Denmark.

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http://dx.doi.org/10.1021/pr400457uDOI Listing
September 2013

In vivo phosphoproteomics analysis reveals the cardiac targets of β-adrenergic receptor signaling.

Sci Signal 2013 Jun 4;6(278):rs11. Epub 2013 Jun 4.

Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3b, DK-2200 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/scisignal.2003506DOI Listing
June 2013

STRING v9.1: protein-protein interaction networks, with increased coverage and integration.

Nucleic Acids Res 2013 Jan 29;41(Database issue):D808-15. Epub 2012 Nov 29.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, Switzerland.

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http://dx.doi.org/10.1093/nar/gks1094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531103PMC
January 2013

Mining electronic health records: towards better research applications and clinical care.

Nat Rev Genet 2012 May 2;13(6):395-405. Epub 2012 May 2.

NNF Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1038/nrg3208DOI Listing
May 2012

Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins.

J Proteome Res 2012 Feb 14;11(2):917-26. Epub 2011 Dec 14.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen , Øster Voldgade 5-7, 1350, Copenhagen, Denmark.

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http://dx.doi.org/10.1021/pr200721uDOI Listing
February 2012

Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation.

Sci Signal 2011 Jul 26;4(183):ra48. Epub 2011 Jul 26.

Department of Proteomics, The Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3, 2200 Copenhagen, Denmark.

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http://stke.sciencemag.org/cgi/doi/10.1126/scisignal.2001902
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http://dx.doi.org/10.1126/scisignal.2001902DOI Listing
July 2011

Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level.

Mol Cell Proteomics 2011 Mar 7;10(3):M110.003590. Epub 2010 Dec 7.

Department of Proteomics, The Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Faculty of Health Sciences, DK-2200 Copenhagen.

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http://dx.doi.org/10.1074/mcp.M110.003590DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3047152PMC
March 2011

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.

Nucleic Acids Res 2011 Jan 2;39(Database issue):D561-8. Epub 2010 Nov 2.

Faculty of Health Sciences, Novo Nordisk Foundation Centre for Protein Research, University of Copenhagen, Denmark.

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http://dx.doi.org/10.1093/nar/gkq973DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013807PMC
January 2011

Phospho.ELM: a database of phosphorylation sites--update 2011.

Nucleic Acids Res 2011 Jan 9;39(Database issue):D261-7. Epub 2010 Nov 9.

SCB Unit, EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1093/nar/gkq1104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013696PMC
January 2011

Specific CLK inhibitors from a novel chemotype for regulation of alternative splicing.

Chem Biol 2011 Jan;18(1):67-76

University of Oxford, Nuffield Department of Clinical Medicine, Structural Genomics Consortium, Old Road Campus Research Building, Oxford OX37DQ, UK.

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http://dx.doi.org/10.1016/j.chembiol.2010.11.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3145970PMC
January 2011

High-resolution transcription atlas of the mitotic cell cycle in budding yeast.

Genome Biol 2010 1;11(3):R24. Epub 2010 Mar 1.

EMBL - European Molecular Biology Laboratory, Department of Genome Biology, Meyerhofstr, Heidelberg, Germany.

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http://dx.doi.org/10.1186/gb-2010-11-3-r24DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2864564PMC
September 2010

Ontologies in quantitative biology: a basis for comparison, integration, and discovery.

PLoS Biol 2010 May 25;8(5):e1000374. Epub 2010 May 25.

Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1371/journal.pbio.1000374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2876043PMC
May 2010

Martini: using literature keywords to compare gene sets.

Nucleic Acids Res 2010 Jan 25;38(1):26-38. Epub 2009 Oct 25.

European Molecular Biology Laboratory, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1093/nar/gkp876DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2800231PMC
January 2010

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.

Sci Signal 2010 Jan 12;3(104):ra3. Epub 2010 Jan 12.

Department of Proteomics and Signal Transduction, Max-Planck-Institute for Biochemistry, Am Klopferspitz 18, D-82152 Martinsried near Munich, Germany.

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http://dx.doi.org/10.1126/scisignal.2000475DOI Listing
January 2010

Quantifying environmental adaptation of metabolic pathways in metagenomics.

Proc Natl Acad Sci U S A 2009 Feb 22;106(5):1374-9. Epub 2009 Jan 22.

Program in Computational Biology and Bioinformatics, Departments of Molecular Biophysics and Biochemistry, Computer Science, and Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1073/pnas.0808022106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2629784PMC
February 2009

Sequence-based feature prediction and annotation of proteins.

Genome Biol 2009 Feb 2;10(2):206. Epub 2009 Feb 2.

Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, DK-2800 Lyngby, Denmark.

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http://dx.doi.org/10.1186/gb-2009-10-2-206DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2688272PMC
February 2009

Predicting biological networks from genomic data.

FEBS Lett 2008 Apr 21;582(8):1251-8. Epub 2008 Feb 21.

Structural and Computational Biology Unit, European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117 Heidelberg, Germany.

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http://dx.doi.org/10.1016/j.febslet.2008.02.033DOI Listing
April 2008

STRING 7--recent developments in the integration and prediction of protein interactions.

Nucleic Acids Res 2007 Jan 10;35(Database issue):D358-62. Epub 2006 Nov 10.

European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1093/nar/gkl825DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669762PMC
January 2007

The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast.

Yeast 2006 Mar;23(4):261-277

Cancer Research UK Fission Yeast Functional Genomics Group, Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1002/yea.1351DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1828074PMC
March 2006

Origin of replication in circular prokaryotic chromosomes.

Environ Microbiol 2006 Feb;8(2):353-61

Biological Sciences, AstraZeneca R and D Lund, Sweden.

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http://dx.doi.org/10.1111/j.1462-2920.2005.00917.xDOI Listing
February 2006

Large-scale extraction of gene regulation for model organisms in an ontological context.

In Silico Biol 2005 ;5(1):21-32

European Media Laboratory GmbH, D-69118 Heidelberg, Germany.

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September 2005

Extraction of transcript diversity from scientific literature.

PLoS Comput Biol 2005 Jun 24;1(1):e10. Epub 2005 Jun 24.

Structural and Computational Biology Program, European Molecular Biology Laboratory, Heidelberg, Germany.

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http://dx.doi.org/10.1371/journal.pcbi.0010010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1183516PMC
June 2005

Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs.

Nat Biotechnol 2004 Jul;22(7):911-7

European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1038/nbt988DOI Listing
July 2004

Depolarization-induced calcium influx in rat mesenteric small arterioles is mediated exclusively via mibefradil-sensitive calcium channels.

Br J Pharmacol 2004 Jun 1;142(4):709-18. Epub 2004 Jun 1.

Department of Medical Physiology, The Panum Institute, University of Copenhagen, Copenhagen DK-2200, Denmark.

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http://dx.doi.org/10.1038/sj.bjp.0705841DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1575051PMC
June 2004

Protein interaction networks from yeast to human.

Curr Opin Struct Biol 2004 Jun;14(3):292-9

European Molecular Biology Laboratory, Structural and Computational Biology Programme, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1016/j.sbi.2004.05.003DOI Listing
June 2004

Protein feature based identification of cell cycle regulated proteins in yeast.

J Mol Biol 2003 Jun;329(4):663-74

Center for Biological Sequence Analysis, BioCentrum, The Technical University of Denmark, Building 208, DK-2800, Lyngby, Denmark.

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http://dx.doi.org/10.1016/s0022-2836(03)00490-xDOI Listing
June 2003

Expression of connexin 37, 40 and 43 in rat mesenteric arterioles and resistance arteries.

Histochem Cell Biol 2003 Feb 7;119(2):139-48. Epub 2003 Feb 7.

Department of Medical Physiology, Division of Renal and Cardiovascular Physiology, University of Copenhagen, The Panum Institute 10.5, Blegdamsvej 3, Denmark.

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http://dx.doi.org/10.1007/s00418-002-0493-0DOI Listing
February 2003