Lalit Ponnala

Lalit Ponnala

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Lalit Ponnala

Lalit Ponnala

Publications by authors named "Lalit Ponnala"

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28Publications

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Targeted Profiling of Subproteomes Illuminates Co- and Posttranslationally N-Terminal Myristoylated Proteins.

Plant Cell 2018 03 16;30(3):543-562. Epub 2018 Feb 16.

Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, 91198 Gif-sur-Yvette cedex, France

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http://www.plantcell.org/lookup/doi/10.1105/tpc.17.00523
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http://dx.doi.org/10.1105/tpc.17.00523DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5894833PMC
March 2018

Transcriptional dynamics of Phytophthora infestans during sequential stages of hemibiotrophic infection of tomato.

Mol Plant Pathol 2016 Jan 8;17(1):29-41. Epub 2015 May 8.

Section of Plant Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.

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http://dx.doi.org/10.1111/mpp.12263DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6638332PMC
January 2016

MET1 is a thylakoid-associated TPR protein involved in photosystem II supercomplex formation and repair in Arabidopsis.

Plant Cell 2015 Jan 13;27(1):262-85. Epub 2015 Jan 13.

Department of Plant Biology, Cornell University, Ithaca, New York 14853

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http://dx.doi.org/10.1105/tpc.114.132787DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4330576PMC
January 2015

Correlation of mRNA and protein abundance in the developing maize leaf.

Plant J 2014 May 2;78(3):424-40. Epub 2014 Apr 2.

Computational Biology Service Unit, Cornell University, Ithaca, NY, 14853, USA.

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http://dx.doi.org/10.1111/tpj.12482DOI Listing
May 2014

ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis.

Plant Cell 2013 Jun 28;25(6):2276-301. Epub 2013 Jun 28.

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

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http://dx.doi.org/10.1105/tpc.113.112557DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3723626PMC
June 2013

Complete Genome Sequence of the Porcine Strain Brachyspira pilosicoli P43/6/78(T.).

Genome Announc 2013 Jan 21;1(1). Epub 2013 Feb 21.

Department of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA.

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http://dx.doi.org/10.1128/genomeA.00215-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3587939PMC
January 2013

Ontogeny of the maize shoot apical meristem.

Plant Cell 2012 Aug 21;24(8):3219-34. Epub 2012 Aug 21.

Department of Plant Biology, Cornell University, Ithaca, New York 14583, USA.

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http://dx.doi.org/10.1105/tpc.112.099614DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3462627PMC
August 2012

Strategies for transcriptome analysis in nonmodel plants.

Am J Bot 2012 Feb 1;99(2):267-76. Epub 2012 Feb 1.

Department of Horticulture, Cornell University, New York State Agricultural Experiment Station, Geneva, New York 14456, USA.

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http://doi.wiley.com/10.3732/ajb.1100334
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http://dx.doi.org/10.3732/ajb.1100334DOI Listing
February 2012

Detecting slow-translating regions in E.coli.

Authors:
Lalit Ponnala

Int J Bioinform Res Appl 2010 ;6(5):522-30

Computational Biology Service Unit, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1504/IJBRA.2010.03799DOI Listing
June 2011

Large-scale label-free quantitative proteomics of the pea aphid-Buchnera symbiosis.

Mol Cell Proteomics 2011 Jun 18;10(6):M110.007039. Epub 2011 Mar 18.

Department of Plant Biology, Cornell University, Ithaca, NY 14853, USA.

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http://www.mcponline.org/lookup/doi/10.1074/mcp.M110.007039
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http://dx.doi.org/10.1074/mcp.M110.007039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3108839PMC
June 2011

Analysis of ultra low genome conservation in Clostridium difficile.

PLoS One 2010 Dec 8;5(12):e15147. Epub 2010 Dec 8.

Department of Population Medicine and Diagnostic Sciences, College of Veterinary Medicine, Cornell University, Ithaca, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0015147PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2999544PMC
December 2010

Analysis of free energy signals arising from nucleotide hybridization between rRNA and mRNA sequences during translation in eubacteria.

EURASIP J Bioinform Syst Biol 2006 :23613

Department of Electrical and Computer Engineering, North Carolina State University, Raleigh, NC 27695, USA.

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http://dx.doi.org/10.1155/BSB/2006/23613DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3171316PMC
June 2010

A plausible role for the presence of internal shine-dalgarno sites.

Authors:
Lalit Ponnala

Bioinform Biol Insights 2010 Jun 28;4:55-60. Epub 2010 Jun 28.

Computational Biology Service Unit, Cornell University, Ithaca NY USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2901628PMC
June 2010

The B73 maize genome: complexity, diversity, and dynamics.

Authors:
Patrick S Schnable Doreen Ware Robert S Fulton Joshua C Stein Fusheng Wei Shiran Pasternak Chengzhi Liang Jianwei Zhang Lucinda Fulton Tina A Graves Patrick Minx Amy Denise Reily Laura Courtney Scott S Kruchowski Chad Tomlinson Cindy Strong Kim Delehaunty Catrina Fronick Bill Courtney Susan M Rock Eddie Belter Feiyu Du Kyung Kim Rachel M Abbott Marc Cotton Andy Levy Pamela Marchetto Kerri Ochoa Stephanie M Jackson Barbara Gillam Weizu Chen Le Yan Jamey Higginbotham Marco Cardenas Jason Waligorski Elizabeth Applebaum Lindsey Phelps Jason Falcone Krishna Kanchi Thynn Thane Adam Scimone Nay Thane Jessica Henke Tom Wang Jessica Ruppert Neha Shah Kelsi Rotter Jennifer Hodges Elizabeth Ingenthron Matt Cordes Sara Kohlberg Jennifer Sgro Brandon Delgado Kelly Mead Asif Chinwalla Shawn Leonard Kevin Crouse Kristi Collura Dave Kudrna Jennifer Currie Ruifeng He Angelina Angelova Shanmugam Rajasekar Teri Mueller Rene Lomeli Gabriel Scara Ara Ko Krista Delaney Marina Wissotski Georgina Lopez David Campos Michele Braidotti Elizabeth Ashley Wolfgang Golser HyeRan Kim Seunghee Lee Jinke Lin Zeljko Dujmic Woojin Kim Jayson Talag Andrea Zuccolo Chuanzhu Fan Aswathy Sebastian Melissa Kramer Lori Spiegel Lidia Nascimento Theresa Zutavern Beth Miller Claude Ambroise Stephanie Muller Will Spooner Apurva Narechania Liya Ren Sharon Wei Sunita Kumari Ben Faga Michael J Levy Linda McMahan Peter Van Buren Matthew W Vaughn Kai Ying Cheng-Ting Yeh Scott J Emrich Yi Jia Ananth Kalyanaraman An-Ping Hsia W Brad Barbazuk Regina S Baucom Thomas P Brutnell Nicholas C Carpita Cristian Chaparro Jer-Ming Chia Jean-Marc Deragon James C Estill Yan Fu Jeffrey A Jeddeloh Yujun Han Hyeran Lee Pinghua Li Damon R Lisch Sanzhen Liu Zhijie Liu Dawn Holligan Nagel Maureen C McCann Phillip SanMiguel Alan M Myers Dan Nettleton John Nguyen Bryan W Penning Lalit Ponnala Kevin L Schneider David C Schwartz Anupma Sharma Carol Soderlund Nathan M Springer Qi Sun Hao Wang Michael Waterman Richard Westerman Thomas K Wolfgruber Lixing Yang Yeisoo Yu Lifang Zhang Shiguo Zhou Qihui Zhu Jeffrey L Bennetzen R Kelly Dawe Jiming Jiang Ning Jiang Gernot G Presting Susan R Wessler Srinivas Aluru Robert A Martienssen Sandra W Clifton W Richard McCombie Rod A Wing Richard K Wilson

Science 2009 Nov;326(5956):1112-5

Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA.

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http://www.dawelab.org/wp-content/uploads/2011/03/schnable-2
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http://www.sciencemag.org/cgi/doi/10.1126/science.1178534
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http://dx.doi.org/10.1126/science.1178534DOI Listing
November 2009

On finding poorly translated codons based on their usage frequency.

Authors:
Lalit Ponnala

Bioinformation 2009 Sep 5;4(2):63-5. Epub 2009 Sep 5.

Computational Biology Service Unit, Cornell University, Ithaca, NY 14853, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2823382PMC
http://dx.doi.org/10.6026/97320630004063DOI Listing
September 2009

Microarray for molecular typing of Salmonella enterica serovars.

Mol Cell Probes 2008 Aug 1;22(4):238-43. Epub 2008 May 1.

Department of Population Medicine and Diagnostic Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1016/j.mcp.2008.04.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2766089PMC
August 2008