Lakshmi K Matukumalli

Lakshmi K Matukumalli

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Lakshmi K Matukumalli

Lakshmi K Matukumalli

Publications by authors named "Lakshmi K Matukumalli"

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25Publications

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High density LD-based structural variations analysis in cattle genome.

PLoS One 2014 22;9(7):e103046. Epub 2014 Jul 22.

Laboratory of Bioinformatics and Biofotonics, Engineering Institute, Autonomous University of Baja California, Baja California, Mexico.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0103046PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4106904PMC
November 2015

Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle.

Funct Integr Genomics 2012 Mar 18;12(1):81-92. Epub 2011 Sep 18.

Bovine Functional Genomics Laboratory, ANRI, USDA-ARS, Building 200, Room 124B, BARC-East, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1007/s10142-011-0252-1DOI Listing
March 2012

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:
Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200PMC
April 2009

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.

Science 2009 Apr;324(5926):528-32

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http://dx.doi.org/10.1126/science.1167936DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2735092PMC
April 2009

High-resolution haplotype block structure in the cattle genome.

BMC Genet 2009 Apr 24;10:19. Epub 2009 Apr 24.

Department of Bioinformatics and Computational Biology, George Mason University, VA, USA.

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http://dx.doi.org/10.1186/1471-2156-10-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2684545PMC
April 2009

Identification of conserved regulatory elements in mammalian promoter regions: a case study using the PCK1 promoter.

Genomics Proteomics Bioinformatics 2008 Dec;6(3-4):129-43

Bovine Functional Genomics Laboratory, Beltsville Agricultural Research Center, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1016/S1672-0229(09)60001-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054123PMC
December 2008

High-throughput genotyping with the GoldenGate assay in the complex genome of soybean.

Theor Appl Genet 2008 May 16;116(7):945-52. Epub 2008 Feb 16.

Soybean Genomics and Improvement Laboratory, US Department of Agriculture, Agricultural Research Service, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1007/s00122-008-0726-2DOI Listing
May 2008

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries.

Nat Methods 2008 Mar 24;5(3):247-52. Epub 2008 Feb 24.

Bovine Functional Genomics Laboratory, United States Department of Agriculture, Agricultural Research Service, 10300 Baltimore Avenue, Beltsville, Maryland 20705, USA.

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http://www.nature.com/articles/nmeth.1185
Publisher Site
http://dx.doi.org/10.1038/nmeth.1185DOI Listing
March 2008

Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues.

Physiol Genomics 2007 Mar 14;29(1):35-43. Epub 2006 Nov 14.

United States Department of Agriculture, Agricultural Research Center, Beltsville Area Research Center, Beltsville, Maryland 20705, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00081.2006DOI Listing
March 2007

SNP-PHAGE--High throughput SNP discovery pipeline.

BMC Bioinformatics 2006 Oct 23;7:468. Epub 2006 Oct 23.

US Department of Agriculture, ARS, Beltsville Agricultural Research Center, Bovine Functional Genomics Laboratory, Beltsville, MD 20705, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-7-468DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1626092PMC
October 2006

Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences.

BMC Genomics 2006 Jun 7;7:140. Epub 2006 Jun 7.

USDA, ARS, ANRI, Bovine Functional Genomics Laboratory, Beltsville Agricultural Research Center (BARC)-East, 10300 Baltimore Avenue, Beltsville, MD 20705, USA.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-7-140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1525190PMC
June 2006

Application of machine learning in SNP discovery.

BMC Bioinformatics 2006 Jan 6;7. Epub 2006 Jan 6.

Beltsville Agricultural Research Center, Bovine Functional Genomics Laboratory, US Department of Agriculture, ARS, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1186/1471-2105-7-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1955739PMC
January 2006

Expressed sequence tag analysis of Eimeria-stimulated intestinal intraepithelial lymphocytes in chickens.

Mol Biotechnol 2005 Jun;30(2):143-50

Animal Parasitic Diseases Laboratory, Animal & Natural Resources Institute, US Dept. of Agriculture, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1385/MB:30:2:143DOI Listing
June 2005

EST-PAGE--managing and analyzing EST data.

Bioinformatics 2004 Jan;20(2):286-8

US Department of Agriculture, ARS, Beltsville Agricultural Research Center, Bovine Functional Genomics Laboratory, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg411DOI Listing
January 2004