Publications by authors named "Kyung-Ah Sohn"

29Publications

An Exploration of Machine Learning Methods for Robust Boredom Classification Using EEG and GSR Data.

Sensors (Basel) 2019 Oct 20;19(20). Epub 2019 Oct 20.

Department of Computer Engineering, Ajou University, Suwon 16499, Korea.

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http://dx.doi.org/10.3390/s19204561DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6832442PMC
October 2019

MildInt: Deep Learning-Based Multimodal Longitudinal Data Integration Framework.

Front Genet 2019 28;10:617. Epub 2019 Jun 28.

Biomedical & Translational Informatics Institute, Geisinger, Danville, PA, United States.

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http://dx.doi.org/10.3389/fgene.2019.00617DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6611503PMC
June 2019

Topological integration of RPPA proteomic data with multi-omics data for survival prediction in breast cancer via pathway activity inference.

BMC Med Genomics 2019 07 11;12(Suppl 5):94. Epub 2019 Jul 11.

Department of Computer Engineering, Ajou University, Suwon, 16499, South Korea.

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http://dx.doi.org/10.1186/s12920-019-0511-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6624183PMC
July 2019

ClearF: a supervised feature scoring method to find biomarkers using class-wise embedding and reconstruction.

BMC Med Genomics 2019 07 11;12(Suppl 5):95. Epub 2019 Jul 11.

Department of Computer Engineering, Ajou University, Suwon, 16499, South Korea.

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http://dx.doi.org/10.1186/s12920-019-0512-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6624178PMC
July 2019

Predicting Alzheimer's disease progression using multi-modal deep learning approach.

Sci Rep 2019 02 13;9(1):1952. Epub 2019 Feb 13.

Biomedical & Translational Informatics Institute, Geisinger, Danville, USA.

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http://dx.doi.org/10.1038/s41598-018-37769-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6374429PMC
February 2019

Integrative pathway-based survival prediction utilizing the interaction between gene expression and DNA methylation in breast cancer.

BMC Med Genomics 2018 Sep 14;11(Suppl 3):68. Epub 2018 Sep 14.

Department of Computer Engineering, Ajou University, Suwon, 16499, South Korea.

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http://dx.doi.org/10.1186/s12920-018-0389-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6157196PMC
September 2018

Identification of epigenetic interactions between miRNA and DNA methylation associated with gene expression as potential prognostic markers in bladder cancer.

BMC Med Genomics 2017 05 24;10(Suppl 1):30. Epub 2017 May 24.

Biomedical & Translational Informatics Institute, Geisinger Health System, Danville, PA, USA.

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http://dx.doi.org/10.1186/s12920-017-0269-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5461531PMC
May 2017

Identifying subtype-specific associations between gene expression and DNA methylation profiles in breast cancer.

BMC Med Genomics 2017 05 24;10(Suppl 1):28. Epub 2017 May 24.

Department of Software and Computer Engineering, Ajou University, Suwon, 16499, South Korea.

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http://dx.doi.org/10.1186/s12920-017-0268-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5461552PMC
May 2017

Integrative regression network for genomic association study.

BMC Med Genomics 2016 08 12;9 Suppl 1:31. Epub 2016 Aug 12.

Department of Information and Computer Engineering, Ajou University, Suwon, 443-749, Republic of Korea.

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http://dx.doi.org/10.1186/s12920-016-0192-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4989890PMC
August 2016

A comment on two-locus epistatic interaction models for genome-wide association studies.

J Bioinform Comput Biol 2015 Dec 5;13(6):1571004. Epub 2015 Jul 5.

1 Department of Information and Computer Engineering, Ajou University, Suwon, South Korea 443-749, South Korea.

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http://dx.doi.org/10.1142/S0219720015710043DOI Listing
December 2015

Integrative network analysis for survival-associated gene-gene interactions across multiple genomic profiles in ovarian cancer.

J Ovarian Res 2015 Jul 3;8:42. Epub 2015 Jul 3.

Department of Information and Computer Engineering, Ajou University, Suwon, 443-749, Republic of Korea.

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http://dx.doi.org/10.1186/s13048-015-0171-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4491426PMC
July 2015

hiHMM: Bayesian non-parametric joint inference of chromatin state maps.

Bioinformatics 2015 Jul 27;31(13):2066-74. Epub 2015 Feb 27.

Department of Information and Computer Engineering, Ajou University, Suwon 443-749, South Korea, Seoul National University Biomedical Informatics (SNUBI), Division of Biomedical Informatics, Seoul National University College of Medicine, Seoul 110799, Korea, Systems Biomedical Informatics Research Center, Seoul National University, Seoul 110799, Korea, Victor Chang Cardiac Research Institute, Sydney, NSW 2010, Australia, The University of New South Wales, Sydney, NSW 2052, Australia, Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA and Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA Department of Information and Computer Engineering, Ajou University, Suwon 443-749, South Korea, Seoul National University Biomedical Informatics (SNUBI), Division of Biomedical Informatics, Seoul National University College of Medicine, Seoul 110799, Korea, Systems Biomedical Informatics Research Center, Seoul National University, Seoul 110799, Korea, Victor Chang Cardiac Research Institute, Sydney, NSW 2010, Australia, The University of New South Wales, Sydney, NSW 2052, Australia, Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA and Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1093/bioinformatics/btv117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4481846PMC
July 2015

Relevance Epistasis Network of Gastritis for Intra-chromosomes in the Korea Associated Resource (KARE) Cohort Study.

Genomics Inform 2014 Dec 31;12(4):216-24. Epub 2014 Dec 31.

Department of Information and Computer Engineering, Ajou University, Suwon 443-749, Korea.

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http://dx.doi.org/10.5808/GI.2014.12.4.216DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4330257PMC
December 2014

Comparative analysis of metazoan chromatin organization.

Nature 2014 Aug;512(7515):449-52

1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [3] Informatics Program, Children's Hospital, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1038/nature13415DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4227084PMC
August 2014

Knowledge boosting: a graph-based integration approach with multi-omics data and genomic knowledge for cancer clinical outcome prediction.

J Am Med Inform Assoc 2015 Jan 7;22(1):109-20. Epub 2014 Jul 7.

Division of Biomedical Informatics, Seoul National University Biomedical Informatics (SNUBI), Seoul National University College of Medicine, Seoul, Korea Systems Biomedical Informatics Research Center, Seoul National University, Seoul, Korea.

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http://jamia.oxfordjournals.org/content/jaminfo/22/1/109.ful
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http://jamia.oxfordjournals.org/cgi/doi/10.1136/amiajnl-2013
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http://dx.doi.org/10.1136/amiajnl-2013-002481DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4433357PMC
January 2015

Fast detection of high-order epistatic interactions in genome-wide association studies using information theoretic measure.

Comput Biol Chem 2014 Jun 27;50:19-28. Epub 2014 Jan 27.

Department of Information and Computer Engineering, Ajou University, Suwon 443-749, South Korea. Electronic address:

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http://dx.doi.org/10.1016/j.compbiolchem.2014.01.005DOI Listing
June 2014

Incorporating inter-relationships between different levels of genomic data into cancer clinical outcome prediction.

Methods 2014 Jun 18;67(3):344-53. Epub 2014 Feb 18.

Seoul National University Biomedical Informatics (SNUBI), Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul 110799, Republic of Korea; Systems Biomedical Informatics Research Center, Seoul National University, Seoul 110799, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.ymeth.2014.02.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4664202PMC
June 2014

MicroRNA-centric measurement improves functional enrichment analysis of co-expressed and differentially expressed microRNA clusters.

BMC Genomics 2012 13;13 Suppl 7:S17. Epub 2012 Dec 13.

Seoul National University Biomedical Informatics (SNUBI) and Systems Biomedical Informatics Research Center, Division of Biomedical Informatics, Seoul National University College of Medicine, Seoul 110799, Korea.

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http://dx.doi.org/10.1186/1471-2164-13-S7-S17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3521213PMC
June 2013

Robust estimation of local genetic ancestry in admixed populations using a nonparametric Bayesian approach.

Genetics 2012 Aug 29;191(4):1295-308. Epub 2012 May 29.

School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA.

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http://dx.doi.org/10.1534/genetics.112.140228DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3416008PMC
August 2012

A multivariate regression approach to association analysis of a quantitative trait network.

Bioinformatics 2009 Jun;25(12):i204-12

School of Computer Science, Carnegie Mellon University, Pittsburgh, USA.

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http://dx.doi.org/10.1093/bioinformatics/btp218DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687972PMC
June 2009

Spectrum: joint Bayesian inference of population structure and recombination events.

Bioinformatics 2007 Jul;23(13):i479-89

School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.

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http://dx.doi.org/10.1093/bioinformatics/btm171DOI Listing
July 2007