Kyudong Han

Kyudong Han

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Kyudong Han

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Comparison of library construction kits for mRNA sequencing in the Illumina platform.

Genes Genomics 2019 Oct 26;41(10):1233-1240. Epub 2019 Jul 26.

Department of Nanobiomedical Science and BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, 31116, Republic of Korea.

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http://dx.doi.org/10.1007/s13258-019-00853-3DOI Listing
October 2019

Complete genome sequence and phylogenetic analysis of nosocomial pathogen Acinetobacter nosocomialis strain NCTC 8102.

Genes Genomics 2019 09 8;41(9):1063-1075. Epub 2019 Jun 8.

Department of Microbiology and Medical Science, Chungnam National University School of Medicine, 266 Munwha-ro, Jung-gu, Daejeon, 35015, South Korea.

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http://dx.doi.org/10.1007/s13258-019-00834-6DOI Listing
September 2019

Transposable element-mediated structural variation analysis in dog breeds using whole-genome sequencing.

Mamm Genome 2019 Aug 15. Epub 2019 Aug 15.

Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, 31116, Republic of Korea.

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http://link.springer.com/10.1007/s00335-019-09812-5
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http://dx.doi.org/10.1007/s00335-019-09812-5DOI Listing
August 2019

A comprehensive analysis of the Baboon-specific full-length LINE-1 retrotransposons.

Genes Genomics 2019 07 18;41(7):831-837. Epub 2019 Mar 18.

Department of Nanobiomedical Science, BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, 31116, Republic of Korea.

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http://dx.doi.org/10.1007/s13258-019-00794-xDOI Listing
July 2019

A comprehensive analysis of chimpanzee (Pan troglodytes)-specific LINE-1 retrotransposons.

Gene 2019 Apr 26;693:46-51. Epub 2019 Jan 26.

Department of Nanobiomedical Science, Dankook University, Cheonan 31116, Republic of Korea; BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan 31116, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2019.01.022DOI Listing
April 2019

A Simple Guideline to Assess the Characteristics of RNA-Seq Data.

Biomed Res Int 2018 4;2018:2906292. Epub 2018 Nov 4.

Department of Microbiology, College of Natural Sciences, Dankook University, Cheonan 31116, Republic of Korea.

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https://www.hindawi.com/journals/bmri/2018/2906292/
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http://dx.doi.org/10.1155/2018/2906292DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6241233PMC
March 2019

Amelogenic transcriptome profiling in ameloblast-like cells derived from adult gingival epithelial cells.

Sci Rep 2019 Mar 6;9(1):3736. Epub 2019 Mar 6.

Department of Nanobiomedical Science and BK21 PLUS Global Research Center for Regenerative Medicine, Dankook University, Cheonan, 31116, South Korea.

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http://dx.doi.org/10.1038/s41598-019-40091-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6403286PMC
March 2019

Investigation of Hanwoo-specific structural variations using whole-genome sequencing data.

Genes Genomics 2019 02 8;41(2):233-240. Epub 2018 Dec 8.

Department of Nanobiomedical Science and BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, 31116, Republic of Korea.

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http://link.springer.com/10.1007/s13258-018-0772-3
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http://dx.doi.org/10.1007/s13258-018-0772-3DOI Listing
February 2019

Novel Discovery of LINE-1 in a Korean Individual by a Target Enrichment Method.

Mol Cells 2019 Jan 6;42(1):87-95. Epub 2018 Dec 6.

Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan 31116, Korea.

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http://www.molcells.org/journal/view.html?doi=10.14348/molce
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http://dx.doi.org/10.14348/molcells.2018.0351DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6354063PMC
January 2019

A case of interdigitating dendritic cell sarcoma studied by whole-exome sequencing.

Genes Genomics 2018 12 11;40(12):1279-1285. Epub 2018 Aug 11.

Department of Otorhinolaryngology-Head and Neck Surgery, College of Medicine, Dankook University, Cheonan, 31116, Republic of Korea.

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http://dx.doi.org/10.1007/s13258-018-0724-yDOI Listing
December 2018

MicroRNAs in Autoimmune Sjögren's Syndrome.

Genomics Inform 2018 Dec 28;16(4):e19. Epub 2018 Dec 28.

Department of Nanobiomedical Science and BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan 31116, Korea.

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http://dx.doi.org/10.5808/GI.2018.16.4.e19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6440664PMC
December 2018

Simple and Low-Cost Sampling of Cell-Free Nucleic Acids from Blood Plasma for Rapid and Sensitive Detection of Circulating Tumor DNA.

Adv Sci (Weinh) 2018 Oct 30;5(10):1800614. Epub 2018 Jul 30.

Department of Convergence Medicine Asan Medical Center University of Ulsan College of Medicine 88 Olympicro-43gil, Songpa-gu ,05505 Seoul Republic of Korea.

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http://doi.wiley.com/10.1002/advs.201800614
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http://dx.doi.org/10.1002/advs.201800614DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6193143PMC
October 2018

Superior single nucleotide polymorphisms that contribute to two main routes of the fatty acid synthesis pathway in Korean cattle.

Genes Genomics 2018 09 15;40(9):945-954. Epub 2018 May 15.

Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, 31116, Republic of Korea.

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http://dx.doi.org/10.1007/s13258-018-0704-2DOI Listing
September 2018

Human Primary Epithelial Cells Acquire an Epithelial-Mesenchymal-Transition Phenotype during Long-Term Infection by the Oral Opportunistic Pathogen, .

Front Cell Infect Microbiol 2017 1;7:493. Epub 2017 Dec 1.

Department of Oral Health Sciences, College of Dental Medicine, Medical University of South Carolina, Charleston, SC, United States.

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http://dx.doi.org/10.3389/fcimb.2017.00493DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5717492PMC
August 2018

Virulence properties of uropathogenic Escherichia coli isolated from children with urinary tract infection in Korea.

Genes Genomics 2018 06 14;40(6):625-634. Epub 2018 Feb 14.

Department of Microbiology and Medical Science, Chungnam National University School of Medicine, 266 Munwha-ro, Jung-gu, Daejeon, 35015, Republic of Korea.

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http://link.springer.com/10.1007/s13258-018-0664-6
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http://dx.doi.org/10.1007/s13258-018-0664-6DOI Listing
June 2018

Complete genome sequence of uropathogenic Escherichia coli isolate UPEC 26-1.

Genes Genomics 2018 06 14;40(6):643-655. Epub 2018 Feb 14.

Department of Microbiology and Medical Science, Chungnam National University School of Medicine, 266 Munwha-ro, Jung-gu, Daejeon, 35015, Republic of Korea.

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http://dx.doi.org/10.1007/s13258-018-0665-5DOI Listing
June 2018

In vivo evidence on the functional variation within fatty acid synthase gene associated with lipid metabolism in bovine longissimus dorsi muscle tissue.

Genes Genomics 2018 03 21;40(3):289-294. Epub 2017 Nov 21.

Department of Biotechnology, College of Agriculture & Life Science, Hankyong National University, Anseong, Gyeonggi, 17579, Republic of Korea.

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http://link.springer.com/10.1007/s13258-017-0634-4
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http://dx.doi.org/10.1007/s13258-017-0634-4DOI Listing
March 2018

Accurate, predictable, repeatable micro-assembly technology for polymer, microfluidic modules.

Sens Actuators B Chem 2018 Jan 2;254:1249-1258. Epub 2017 Aug 2.

Department of Mechanical & Industrial Engineering, Louisiana State University, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.snb.2017.07.189DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5844477PMC
January 2018

An efficient and tunable parameter to improve variant calling for whole genome and exome sequencing data.

Genes Genomics 2018 01 29;40(1):39-47. Epub 2017 Aug 29.

Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, Republic of Korea.

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http://dx.doi.org/10.1007/s13258-017-0608-6DOI Listing
January 2018

Comprehensive Transcriptome Profiling of Balding and Non-Balding Scalps in Trichorhinophalangeal Syndrome Type I Patient.

Ann Dermatol 2017 Oct 25;29(5):597-601. Epub 2017 Aug 25.

Department of Dermatology, Dankook University Medical College, Cheonan, Korea.

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http://dx.doi.org/10.5021/ad.2017.29.5.597DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5597653PMC
October 2017

The Whole-Genome and Transcriptome of the Manila Clam (Ruditapes philippinarum).

Genome Biol Evol 2017 06;9(6):1487-1498

Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, Republic of Korea.

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http://dx.doi.org/10.1093/gbe/evx096DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5499747PMC
June 2017

Chicken () endogenous retrovirus generates genomic variations in the chicken genome.

Mob DNA 2017 24;8. Epub 2017 Jan 24.

Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, 330-714 Republic of Korea.

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http://mobilednajournal.biomedcentral.com/articles/10.1186/s
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http://dx.doi.org/10.1186/s13100-016-0085-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5260121PMC
January 2017

Modulation of LINE-1 Retrotransposition by a Human SAMHD1 Polymorphism.

Virol Rep 2016 Dec;6:53-60

Department of Microbiology and Immunology, Albert Einstein College of Medicine Bronx, NY 10461.

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http://dx.doi.org/10.1016/j.virep.2016.06.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4959807PMC
December 2016

Structural Variation of Element and Human Disease.

Genomics Inform 2016 Sep 30;14(3):70-77. Epub 2016 Sep 30.

Division of Pulmonary, Critical Care and Sleep Medicine, Department of Medicine, University of Florida, Gainesville, FL 32610, USA.

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http://dx.doi.org/10.5808/GI.2016.14.3.70DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5056899PMC
September 2016

Mutational Analysis of Extranodal NK/T-Cell Lymphoma Using Targeted Sequencing with a Comprehensive Cancer Panel.

Genomics Inform 2016 Sep 30;14(3):78-84. Epub 2016 Sep 30.

Department of Nanobiomedical Science, BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan 31116, Korea.

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http://dx.doi.org/10.5808/GI.2016.14.3.78DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5056900PMC
September 2016

A Genome-Wide Methylation Approach Identifies a New Hypermethylated Gene Panel in Ulcerative Colitis.

Int J Mol Sci 2016 Aug 9;17(8). Epub 2016 Aug 9.

Research Center, Dongnam Institute of Radiological & Medical Sciences (DIRAMS), Busan 46033, Korea.

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http://dx.doi.org/10.3390/ijms17081291DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5000688PMC
August 2016

Whole Genome Re-Sequencing of Three Domesticated Chicken Breeds.

Zoolog Sci 2016 Feb;33(1):73-7

3 Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dan kook University, Cheonan, 330-714, Republic of Korea.

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http://dx.doi.org/10.2108/zs150071DOI Listing
February 2016

Gene structure variation in segmental duplication block C of human chromosome 7q 11.23 during primate evolution.

Gene 2015 Dec 18;573(2):285-95. Epub 2015 Jul 18.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2015.07.060DOI Listing
December 2015

Dynamic changes in host gene expression associated with H5N8 avian influenza virus infection in mice.

Sci Rep 2015 Nov 18;5:16512. Epub 2015 Nov 18.

Department of Biomedical Sciences, College of Medicine, Korea University Guro Hospital, Seoul, 152-703, Republic of Korea.

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http://dx.doi.org/10.1038/srep16512DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4649622PMC
November 2015

Identification and expression analysis of human endogenous retrovirus Y (HERV-Y) in various human tissues.

Arch Virol 2015 Sep 20;160(9):2161-8. Epub 2015 Jun 20.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan, 609-735, Republic of Korea.

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http://dx.doi.org/10.1007/s00705-015-2486-zDOI Listing
September 2015

Genome-wide target site triplication of Alu elements in the human genome.

Gene 2015 May 19;561(2):283-91. Epub 2015 Feb 19.

Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan 330-714, Republic of Korea; DKU-Theragen institute for NGS analysis (DTiNa), Cheonan 330-714, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2015.02.052DOI Listing
May 2015

Simple Method for Markerless Gene Deletion in Multidrug-Resistant Acinetobacter baumannii.

Appl Environ Microbiol 2015 May 6;81(10):3357-68. Epub 2015 Mar 6.

Department of Nanobiomedical Science and BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, Republic of Korea

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http://aem.asm.org/lookup/doi/10.1128/AEM.03975-14
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http://dx.doi.org/10.1128/AEM.03975-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4407223PMC
May 2015

Transposable element-driven transcript diversification and its relevance to genetic disorders.

Gene 2015 Mar 21;558(2):187-94. Epub 2015 Jan 21.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S03781119150006
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http://dx.doi.org/10.1016/j.gene.2015.01.039DOI Listing
March 2015

BLAT-based comparative analysis for transposable elements: BLATCAT.

Biomed Res Int 2014 18;2014:730814. Epub 2014 May 18.

Department of Nanobiomedical Science and BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, 330-714, Republic of Korea ; DKU-Theragen Institute for NGS Analysis (DTiNa), Cheonan 330-714, Republic of Korea.

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http://www.hindawi.com/journals/bmri/2014/730814/
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http://dx.doi.org/10.1155/2014/730814DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4052159PMC
February 2015

Chimpanzee-specific endogenous retrovirus generates genomic variations in the chimpanzee genome.

PLoS One 2014 2;9(7):e101195. Epub 2014 Jul 2.

Department of Nanobiomedical Science, Dankook University, Cheonan, Republic of Korea; BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, Republic of Korea; DKU-Theragen institute for NGS analysis (DTiNa), Cheonan, Republic of Korea.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0101195PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079660PMC
February 2015

Endogenous retrovirus-mediated genomic variations in chimpanzees.

Mob Genet Elements 2014 Nov-Dec;4(6):1-4. Epub 2015 Feb 3.

Department of Nanobiomedical Science; Global Research Center for Regenerative Medicine; Dankook University ; Cheonan, Republic of Korea ; DKU-Theragen Institute for NGS Analysis (DTiNa) ; Cheonan, Republic of Korea.

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http://dx.doi.org/10.4161/2159256X.2014.990792DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4588550PMC
February 2015

Identification of human-specific AluS elements through comparative genomics.

Gene 2015 Jan 7;555(2):208-16. Epub 2014 Nov 7.

Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan 330-714, Republic of Korea; DKU-Theragen Institute for NGS Analysis (DTiNa), Cheonan 330-714, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2014.11.005DOI Listing
January 2015

Mucilaginibacter koreensis sp. nov., isolated from leaf mould.

Int J Syst Evol Microbiol 2014 Jul 11;64(Pt 7):2274-9. Epub 2014 Apr 11.

Department of Microbiology, College of Natural Science, Dankook University, Cheonan 330-714, Republic of Korea

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http://dx.doi.org/10.1099/ijs.0.058008-0DOI Listing
July 2014

Phylogeny of flavobacteria group isolated from freshwater using multilocus sequencing analysis.

Genomics Inform 2013 Dec 31;11(4):272-6. Epub 2013 Dec 31.

Department of Microbiology, Dankook University, Cheonan 330-714, Korea.

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http://genominfo.org/journal/view.php?doi=10.5808/GI.2013.11
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http://dx.doi.org/10.5808/GI.2013.11.4.272DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897856PMC
December 2013

Human-specific HERV-K insertion causes genomic variations in the human genome.

PLoS One 2013 12;8(4):e60605. Epub 2013 Apr 12.

Department of Nanobiomedical Science and WCU Research Center, Dankook University, Cheonan, Republic of Korea.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0060605PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3625200PMC
October 2013

Co-existence of blaOXA-23 and armA in multidrug-resistant Acinetobacter baumannii isolated from a hospital in South Korea.

J Med Microbiol 2013 Jun 21;62(Pt 6):836-44. Epub 2013 Mar 21.

Department of Clinical Laboratory Science, Chungbuk Health & Science University, Republic of Korea.

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http://dx.doi.org/10.1099/jmm.0.055384-0DOI Listing
June 2013

First case of Nocardia nova spinal abscess in an immunocompetent patient.

Braz J Infect Dis 2012 Mar-Apr;16(2):196-9

Department of Clinical Laboratory Science, Juseong University, South Korea.

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March 2013

The novel MER transposon-derived miRNAs in human genome.

Gene 2013 Jan 25;512(2):422-8. Epub 2012 Aug 25.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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http://dx.doi.org/10.1016/j.gene.2012.08.028DOI Listing
January 2013

Transposable Elements: No More 'Junk DNA'.

Genomics Inform 2012 Dec 31;10(4):226-33. Epub 2012 Dec 31.

Department of Nanobiomedical Science, WCU Research Center, Dankook University, Cheonan 330-714, Korea.

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http://dx.doi.org/10.5808/GI.2012.10.4.226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3543922PMC
December 2012

Flavobacterium dankookense sp. nov., isolated from a freshwater reservoir, and emended descriptions of Flavobacterium cheonanense, F. chungnamense, F. koreense and F. aquatile.

Int J Syst Evol Microbiol 2012 Oct 18;62(Pt 10):2378-82. Epub 2011 Nov 18.

Department of Microbiology, Dankook University, Anseo-dong, Cheonan 330-714, Republic of Korea.

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http://dx.doi.org/10.1099/ijs.0.032698-0DOI Listing
October 2012

High Levels of Sequence Diversity in the 5' UTRs of Human-Specific L1 Elements.

Comp Funct Genomics 2012 7;2012:129416. Epub 2012 Feb 7.

Department of Nanobiomedical Science & WCU Research Center, Dankook University, Cheonan 330-714, Republic of Korea.

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http://dx.doi.org/10.1155/2012/129416DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3286893PMC
August 2012

Human Genomic Deletions Generated by SVA-Associated Events.

Comp Funct Genomics 2012 20;2012:807270. Epub 2012 May 20.

Department of Nanobiomedical Science and WCU Research Center, Dankook University, Cheonan 330-714, Republic of Korea.

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http://dx.doi.org/10.1155/2012/807270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3362811PMC
August 2012

UniPrimer: A Web-Based Primer Design Tool for Comparative Analyses of Primate Genomes.

Comp Funct Genomics 2012 27;2012:520732. Epub 2012 May 27.

Department of Nanobiomedical Science and WCU Research Center, Dankook University, Cheonan 330-714, Republic of Korea.

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http://dx.doi.org/10.1155/2012/520732DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368176PMC
August 2012

Evolutionary diversification of DYX1C1 transcripts via an HERV-H LTR integration event.

Genes Genet Syst 2011 ;86(4):277-84

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Republic of Korea.

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April 2012

Arenimonas aquatica [corrected] sp. nov., a member of the gammaproteobacterium, isolated from a freshwater reservoir.

J Microbiol 2012 Apr 27;50(2):354-8. Epub 2012 Apr 27.

Department of Microbiology, Dankook University, Cheonan, 330-714, Republic of Korea.

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http://dx.doi.org/10.1007/s12275-012-1301-8DOI Listing
April 2012

Identification of ORF sequences and exercise-induced expression change in thoroughbred horse OXCT1 gene.

Gene 2012 Mar 24;496(1):45-8. Epub 2012 Jan 24.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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http://dx.doi.org/10.1016/j.gene.2012.01.021DOI Listing
March 2012

Quantitative analysis of transcript variants of CHM gene containing LTR12C element in humans.

Gene 2011 Dec 12;489(1):1-5. Epub 2011 Sep 12.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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http://linkinghub.elsevier.com/retrieve/pii/S037811191100495
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http://dx.doi.org/10.1016/j.gene.2011.09.001DOI Listing
December 2011

Identification of a genomic reservoir for new TRIM genes in primate genomes.

PLoS Genet 2011 Dec 1;7(12):e1002388. Epub 2011 Dec 1.

Section of Molecular Genetics and Microbiology, Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas, USA.

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http://dx.doi.org/10.1371/journal.pgen.1002388DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3228819PMC
December 2011

Transcriptional variations mediated by an alternative promoter of the FPR3 gene.

Mamm Genome 2011 Oct 30;22(9-10):621-33. Epub 2011 Jun 30.

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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http://dx.doi.org/10.1007/s00335-011-9341-7DOI Listing
October 2011

A vertically stacked, polymer, microfluidic point mutation analyzer: rapid high accuracy detection of low-abundance K-ras mutations.

Anal Biochem 2011 Oct 30;417(2):211-9. Epub 2011 Jun 30.

Department of Nanobiomedical Science and WCU Research Center, Dankook University, Cheonan 330-714, Republic of Korea.

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http://linkinghub.elsevier.com/retrieve/pii/S000326971100427
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http://dx.doi.org/10.1016/j.ab.2011.06.030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3164578PMC
October 2011

Alu pair exclusions in the human genome.

Mob DNA 2011 Sep 23;2:10. Epub 2011 Sep 23.

Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, 70803, USA.

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http://dx.doi.org/10.1186/1759-8753-2-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3215922PMC
September 2011

Genomic structure and expression analyses of the PYGM gene in the thoroughbred horse.

Zoolog Sci 2011 Apr;28(4):276-80

Department of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Republic of Korea.

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http://dx.doi.org/10.2108/zsj.28.276DOI Listing
April 2011

Laboratory methods for the analysis of primate mobile elements.

Methods Mol Biol 2010 ;628:153-79

Department of Biology, West Virginia University, Morgantown, WV, USA.

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http://dx.doi.org/10.1007/978-1-60327-367-1_9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2880178PMC
May 2010

Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements.

Gene 2009 Dec 2;448(2):242-9. Epub 2009 Jun 2.

Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, Louisiana 70803, USA.

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http://dx.doi.org/10.1016/j.gene.2009.05.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2783879PMC
December 2009

Distribution of four HIV type 1-resistance polymorphisms (CCR5-Delta32, CCR5-m303, CCR2-64I, and SDF1-3'A) in the Bahraini population.

AIDS Res Hum Retroviruses 2009 Oct;25(10):973-7

Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, Kingdom of Bahrain.

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http://dx.doi.org/10.1089/aid.2009.0066DOI Listing
October 2009

Mobile elements create structural variation: analysis of a complete human genome.

Genome Res 2009 Sep 13;19(9):1516-26. Epub 2009 May 13.

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, Salt Lake City, Utah 84109, USA.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.091827.109
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http://dx.doi.org/10.1101/gr.091827.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752133PMC
September 2009

Allele frequencies of the human platelet antigen-1 in the Egyptian population.

BMC Res Notes 2009 May 20;2:90. Epub 2009 May 20.

Department of Anatomy, College of Medicine and Medical Sciences, Arabian Gulf University, Manama, Kingdom of Bahrain.

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http://dx.doi.org/10.1186/1756-0500-2-90DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2691742PMC
May 2009

Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons.

PLoS One 2008 29;3(12):e4047. Epub 2008 Dec 29.

Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0004047PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2603318PMC
March 2009

L1 recombination-associated deletions generate human genomic variation.

Proc Natl Acad Sci U S A 2008 Dec 26;105(49):19366-71. Epub 2008 Nov 26.

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, Baton Rouge, LA 70803, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0807866105
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http://dx.doi.org/10.1073/pnas.0807866105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2614767PMC
December 2008

Alu recombination-mediated structural deletions in the chimpanzee genome.

PLoS Genet 2007 Oct 10;3(10):1939-49. Epub 2007 Sep 10.

Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, USA.

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http://dx.plos.org/10.1371/journal.pgen.0030184
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http://dx.doi.org/10.1371/journal.pgen.0030184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2041999PMC
October 2007

Endonuclease-independent insertion provides an alternative pathway for L1 retrotransposition in the human genome.

Nucleic Acids Res 2007 21;35(11):3741-51. Epub 2007 May 21.

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, Baton Rouge, LA 70803, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkm317DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920257PMC
July 2007

Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons.

Gene 2007 Apr 16;390(1-2):18-27. Epub 2006 Sep 16.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi-Scale Systems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.gene.2006.08.029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1847406PMC
April 2007

Evolutionary and biomedical insights from the rhesus macaque genome.

Authors:
Richard A Gibbs Jeffrey Rogers Michael G Katze Roger Bumgarner George M Weinstock Elaine R Mardis Karin A Remington Robert L Strausberg J Craig Venter Richard K Wilson Mark A Batzer Carlos D Bustamante Evan E Eichler Matthew W Hahn Ross C Hardison Kateryna D Makova Webb Miller Aleksandar Milosavljevic Robert E Palermo Adam Siepel James M Sikela Tony Attaway Stephanie Bell Kelly E Bernard Christian J Buhay Mimi N Chandrabose Marvin Dao Clay Davis Kimberly D Delehaunty Yan Ding Huyen H Dinh Shannon Dugan-Rocha Lucinda A Fulton Ramatu Ayiesha Gabisi Toni T Garner Jennifer Godfrey Alicia C Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan Ewen F Kirkness Andrew Cree R Gerald Fowler Sandra Lee Lora R Lewis Zhangwan Li Yih-Shin Liu Stephanie M Moore Donna Muzny Lynne V Nazareth Dinh Ngoc Ngo Geoffrey O Okwuonu Grace Pai David Parker Heidie A Paul Cynthia Pfannkoch Craig S Pohl Yu-Hui Rogers San Juana Ruiz Aniko Sabo Jireh Santibanez Brian W Schneider Scott M Smith Erica Sodergren Amanda F Svatek Teresa R Utterback Selina Vattathil Wesley Warren Courtney Sherell White Asif T Chinwalla Yucheng Feng Aaron L Halpern Ladeana W Hillier Xiaoqiu Huang Pat Minx Joanne O Nelson Kymberlie H Pepin Xiang Qin Granger G Sutton Eli Venter Brian P Walenz John W Wallis Kim C Worley Shiaw-Pyng Yang Steven M Jones Marco A Marra Mariano Rocchi Jacqueline E Schein Robert Baertsch Laura Clarke Miklós Csürös Jarret Glasscock R Alan Harris Paul Havlak Andrew R Jackson Huaiyang Jiang Yue Liu David N Messina Yufeng Shen Henry Xing-Zhi Song Todd Wylie Lan Zhang Ewan Birney Kyudong Han Miriam K Konkel Jungnam Lee Arian F A Smit Brygg Ullmer Hui Wang Jinchuan Xing Richard Burhans Ze Cheng John E Karro Jian Ma Brian Raney Xinwei She Michael J Cox Jeffery P Demuth Laura J Dumas Sang-Gook Han Janet Hopkins Anis Karimpour-Fard Young H Kim Jonathan R Pollack Tomas Vinar Charles Addo-Quaye Jeremiah Degenhardt Alexandra Denby Melissa J Hubisz Amit Indap Carolin Kosiol Bruce T Lahn Heather A Lawson Alison Marklein Rasmus Nielsen Eric J Vallender Andrew G Clark Betsy Ferguson Ryan D Hernandez Kashif Hirani Hildegard Kehrer-Sawatzki Jessica Kolb Shobha Patil Ling-Ling Pu Yanru Ren David Glenn Smith David A Wheeler Ian Schenck Edward V Ball Rui Chen David N Cooper Belinda Giardine Fan Hsu W James Kent Arthur Lesk David L Nelson William E O'brien Kay Prüfer Peter D Stenson James C Wallace Hui Ke Xiao-Ming Liu Peng Wang Andy Peng Xiang Fan Yang Galt P Barber David Haussler Donna Karolchik Andy D Kern Robert M Kuhn Kayla E Smith Ann S Zwieg

Science 2007 Apr;316(5822):222-34

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1126/science.1139247DOI Listing
April 2007

Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome.

Science 2007 Apr;316(5822):238-40

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Multi-Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1126/science.1139462DOI Listing
April 2007

Human genomic deletions mediated by recombination between Alu elements.

Am J Hum Genet 2006 Jul 3;79(1):41-53. Epub 2006 May 3.

Department of Biological Sciences, Louisiana State University, Baton Rouge, 70803, USA.

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http://dx.doi.org/10.1086/504600DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1474114PMC
July 2006

A mobile element based phylogeny of Old World monkeys.

Mol Phylogenet Evol 2005 Dec 3;37(3):872-80. Epub 2005 Jun 3.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Multi-scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.ympev.2005.04.015DOI Listing
December 2005

SVA elements: a hominid-specific retroposon family.

J Mol Biol 2005 Dec 19;354(4):994-1007. Epub 2005 Oct 19.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi-Scale Systems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.jmb.2005.09.085DOI Listing
December 2005

Imipenem-resistant Achromobacter xylosoxidans carrying blaVIM-2-containing class 1 integron.

Diagn Microbiol Infect Dis 2005 Nov 2;53(3):215-20. Epub 2005 Nov 2.

Department of Laboratory Medicine, College of Medicine, Chungbuk National University, Cheongju, 361-711 Republic of Korea.

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http://dx.doi.org/10.1016/j.diagmicrobio.2005.06.018DOI Listing
November 2005

Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages.

Nucleic Acids Res 2005 20;33(13):4040-52. Epub 2005 Jul 20.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi-Scale Systems, Louisiana State University 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1093/nar/gki718DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1179734PMC
August 2005

Under the genomic radar: the stealth model of Alu amplification.

Genome Res 2005 May;15(5):655-64

Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi-Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1101/gr.3492605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1088293PMC
May 2005

Alu element mutation spectra: molecular clocks and the effect of DNA methylation.

J Mol Biol 2004 Nov;344(3):675-82

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.jmb.2004.09.058DOI Listing
November 2004