Kuo Ping Chiu

Kuo Ping Chiu

UNVERIFIED PROFILE

Are you Kuo Ping Chiu?   Register this Author

Register author
Kuo Ping Chiu

Kuo Ping Chiu

Publications by authors named "Kuo Ping Chiu"

Are you Kuo Ping Chiu?   Register this Author

29Publications

883Reads

33Profile Views

Long-read sequencing in deciphering human genetics to a greater depth.

Hum Genet 2019 Sep 19. Epub 2019 Sep 19.

Genomics Research Center, Academia Sinica, 128 Academia Road, Sec. 2, Nankang District, Taipei, 115, Taiwan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00439-019-02064-yDOI Listing
September 2019

Application of cell-free DNA sequencing in characterization of bloodborne microbes and the study of microbe-disease interactions.

PeerJ 2019 6;7:e7426. Epub 2019 Aug 6.

Department of Pediatrics, University of California, San Diego, San Diego, United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7717/peerj.7426DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6688590PMC
August 2019

Analysis of microbial sequences in plasma cell-free DNA for early-onset breast cancer patients and healthy females.

BMC Med Genomics 2018 02 13;11(Suppl 1):16. Epub 2018 Feb 13.

Genomics Research Center, Academia Sinica, 128 Academia Road, Section 2, Nankang District, Taipei, 115, Taiwan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12920-018-0329-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5836824PMC
February 2018

Complete Taiwanese Macaque (Macaca cyclopis) Mitochondrial Genome: Reference-Assisted de novo Assembly with Multiple k-mer Strategy.

PLoS One 2015 30;10(6):e0130673. Epub 2015 Jun 30.

Genomics Research Center, Academia Sinica, Taipei, Taiwan; Institute of Biochemistry and Molecular Biology, National Yang-Ming University, Taipei, Taiwan; College of Life Science, National Taiwan University, Taipei, Taiwan; Institute of Systems Biology and Bioinformatics, National Central University, Jhongli, Taiwan.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0130673PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4488429PMC
April 2016

Global assessment of Antrodia cinnamomea-induced microRNA alterations in hepatocarcinoma cells.

PLoS One 2013 17;8(12):e82751. Epub 2013 Dec 17.

Genomics Research Center, Academia Sinica, Taipei, Taiwan ; Institute of Systems Biology and Bioinformatics, National Central University, Jhongli, Taiwan ; Department of Life Sciences, College of Life Sciences, National Taiwan University, Taipei, Taiwan.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0082751PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3866163PMC
October 2014

Antibody variable domain interface and framework sequence requirements for stability and function by high-throughput experiments.

Structure 2014 Jan 21;22(1):22-34. Epub 2013 Nov 21.

Graduate Institute of Life Sciences, National Defense Medical Center, Taipei 114, Taiwan; Genomics Research Center, Academia Sinica, Taipei 115, Taiwan. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.str.2013.10.006DOI Listing
January 2014

Concordant and discordant regulation of target genes by miR-31 and its isoforms.

PLoS One 2013 5;8(3):e58169. Epub 2013 Mar 5.

Institute of Biochemistry and Molecular Biology, National Yang-Ming University, Taipei, Taiwan.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0058169PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3589381PMC
December 2013

Palindromic sequence impedes sequencing-by-ligation mechanism.

BMC Syst Biol 2012 12;6 Suppl 2:S10. Epub 2012 Dec 12.

Genomics Research Center, Academia Sinica, 128 Academia Rd,, Sec, 2, Nankang, Taipei 115, Taiwan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1752-0509-6-S2-S10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3521181PMC
June 2013

The use of multiple displacement amplification to amplify complex DNA libraries.

Nucleic Acids Res 2008 Mar 19;36(5):e32. Epub 2008 Feb 19.

Genome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), 60 Biopolis Street, Genome #02-01, Singapore.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkn074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2275127PMC
March 2008

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authors:
Ewan Birney John A Stamatoyannopoulos Anindya Dutta Roderic Guigó Thomas R Gingeras Elliott H Margulies Zhiping Weng Michael Snyder Emmanouil T Dermitzakis Robert E Thurman Michael S Kuehn Christopher M Taylor Shane Neph Christoph M Koch Saurabh Asthana Ankit Malhotra Ivan Adzhubei Jason A Greenbaum Robert M Andrews Paul Flicek Patrick J Boyle Hua Cao Nigel P Carter Gayle K Clelland Sean Davis Nathan Day Pawandeep Dhami Shane C Dillon Michael O Dorschner Heike Fiegler Paul G Giresi Jeff Goldy Michael Hawrylycz Andrew Haydock Richard Humbert Keith D James Brett E Johnson Ericka M Johnson Tristan T Frum Elizabeth R Rosenzweig Neerja Karnani Kirsten Lee Gregory C Lefebvre Patrick A Navas Fidencio Neri Stephen C J Parker Peter J Sabo Richard Sandstrom Anthony Shafer David Vetrie Molly Weaver Sarah Wilcox Man Yu Francis S Collins Job Dekker Jason D Lieb Thomas D Tullius Gregory E Crawford Shamil Sunyaev William S Noble Ian Dunham France Denoeud Alexandre Reymond Philipp Kapranov Joel Rozowsky Deyou Zheng Robert Castelo Adam Frankish Jennifer Harrow Srinka Ghosh Albin Sandelin Ivo L Hofacker Robert Baertsch Damian Keefe Sujit Dike Jill Cheng Heather A Hirsch Edward A Sekinger Julien Lagarde Josep F Abril Atif Shahab Christoph Flamm Claudia Fried Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Missal Andrea Tanzer Stefan Washietl Jan Korbel Olof Emanuelsson Jakob S Pedersen Nancy Holroyd Ruth Taylor David Swarbreck Nicholas Matthews Mark C Dickson Daryl J Thomas Matthew T Weirauch James Gilbert Jorg Drenkow Ian Bell XiaoDong Zhao K G Srinivasan Wing-Kin Sung Hong Sain Ooi Kuo Ping Chiu Sylvain Foissac Tyler Alioto Michael Brent Lior Pachter Michael L Tress Alfonso Valencia Siew Woh Choo Chiou Yu Choo Catherine Ucla Caroline Manzano Carine Wyss Evelyn Cheung Taane G Clark James B Brown Madhavan Ganesh Sandeep Patel Hari Tammana Jacqueline Chrast Charlotte N Henrichsen Chikatoshi Kai Jun Kawai Ugrappa Nagalakshmi Jiaqian Wu Zheng Lian Jin Lian Peter Newburger Xueqing Zhang Peter Bickel John S Mattick Piero Carninci Yoshihide Hayashizaki Sherman Weissman Tim Hubbard Richard M Myers Jane Rogers Peter F Stadler Todd M Lowe Chia-Lin Wei Yijun Ruan Kevin Struhl Mark Gerstein Stylianos E Antonarakis Yutao Fu Eric D Green Ulaş Karaöz Adam Siepel James Taylor Laura A Liefer Kris A Wetterstrand Peter J Good Elise A Feingold Mark S Guyer Gregory M Cooper George Asimenos Colin N Dewey Minmei Hou Sergey Nikolaev Juan I Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham Haiyan Huang Nancy R Zhang Ian Holmes James C Mullikin Abel Ureta-Vidal Benedict Paten Michael Seringhaus Deanna Church Kate Rosenbloom W James Kent Eric A Stone Serafim Batzoglou Nick Goldman Ross C Hardison David Haussler Webb Miller Arend Sidow Nathan D Trinklein Zhengdong D Zhang Leah Barrera Rhona Stuart David C King Adam Ameur Stefan Enroth Mark C Bieda Jonghwan Kim Akshay A Bhinge Nan Jiang Jun Liu Fei Yao Vinsensius B Vega Charlie W H Lee Patrick Ng Atif Shahab Annie Yang Zarmik Moqtaderi Zhou Zhu Xiaoqin Xu Sharon Squazzo Matthew J Oberley David Inman Michael A Singer Todd A Richmond Kyle J Munn Alvaro Rada-Iglesias Ola Wallerman Jan Komorowski Joanna C Fowler Phillippe Couttet Alexander W Bruce Oliver M Dovey Peter D Ellis Cordelia F Langford David A Nix Ghia Euskirchen Stephen Hartman Alexander E Urban Peter Kraus Sara Van Calcar Nate Heintzman Tae Hoon Kim Kun Wang Chunxu Qu Gary Hon Rosa Luna Christopher K Glass M Geoff Rosenfeld Shelley Force Aldred Sara J Cooper Anason Halees Jane M Lin Hennady P Shulha Xiaoling Zhang Mousheng Xu Jaafar N S Haidar Yong Yu Yijun Ruan Vishwanath R Iyer Roland D Green Claes Wadelius Peggy J Farnham Bing Ren Rachel A Harte Angie S Hinrichs Heather Trumbower Hiram Clawson Jennifer Hillman-Jackson Ann S Zweig Kayla Smith Archana Thakkapallayil Galt Barber Robert M Kuhn Donna Karolchik Lluis Armengol Christine P Bird Paul I W de Bakker Andrew D Kern Nuria Lopez-Bigas Joel D Martin Barbara E Stranger Abigail Woodroffe Eugene Davydov Antigone Dimas Eduardo Eyras Ingileif B Hallgrímsdóttir Julian Huppert Michael C Zody Gonçalo R Abecasis Xavier Estivill Gerard G Bouffard Xiaobin Guan Nancy F Hansen Jacquelyn R Idol Valerie V B Maduro Baishali Maskeri Jennifer C McDowell Morgan Park Pamela J Thomas Alice C Young Robert W Blakesley Donna M Muzny Erica Sodergren David A Wheeler Kim C Worley Huaiyang Jiang George M Weinstock Richard A Gibbs Tina Graves Robert Fulton Elaine R Mardis Richard K Wilson Michele Clamp James Cuff Sante Gnerre David B Jaffe Jean L Chang Kerstin Lindblad-Toh Eric S Lander Maxim Koriabine Mikhail Nefedov Kazutoyo Osoegawa Yuko Yoshinaga Baoli Zhu Pieter J de Jong
June 2007

Global mapping of c-Myc binding sites and target gene networks in human B cells.

Proc Natl Acad Sci U S A 2006 Nov 8;103(47):17834-9. Epub 2006 Nov 8.

Department of Medicine and The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

View Article

Download full-text PDF

Source
http://www.pnas.org/cgi/doi/10.1073/pnas.0604129103
Publisher Site
http://dx.doi.org/10.1073/pnas.0604129103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1635161PMC
November 2006

PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data.

BMC Bioinformatics 2006 Aug 25;7:390. Epub 2006 Aug 25.

Information and Mathematical Sciences Group, Genome Institute of Singapore, 60 Biopolis Street, Genome #02-01, 138672, Singapore.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-7-390DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1564156PMC
August 2006

Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation.

Nat Methods 2005 Feb 9;2(2):105-11. Epub 2005 Jan 9.

Genome Institute of Singapore, 60 Biopolis Street, Genome 02-01, Singapore 138672.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nmeth733DOI Listing
February 2005

5' Long serial analysis of gene expression (LongSAGE) and 3' LongSAGE for transcriptome characterization and genome annotation.

Proc Natl Acad Sci U S A 2004 Aug 22;101(32):11701-6. Epub 2004 Jul 22.

Genome Institute of Singapore, 60 Biopolis Street, Genome 02-01, Singapore 138672.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.0403514101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC511040PMC
August 2004