Kristoffer Vitting-Seerup

Kristoffer Vitting-Seerup

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Kristoffer Vitting-Seerup

Kristoffer Vitting-Seerup

Publications by authors named "Kristoffer Vitting-Seerup"

Are you Kristoffer Vitting-Seerup?   Register this Author

19Publications

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IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns of alternative splicing and its functional consequences.

Bioinformatics 2019 Nov;35(21):4469-4471

The Bioinformatics Centre, Department of Biology and Biotech Research & Innovation Centre, University of Copenhagen, 2200 Copenhagen N, Denmark.

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http://dx.doi.org/10.1093/bioinformatics/btz247DOI Listing
November 2019

CAGEfightR: analysis of 5'-end data using R/Bioconductor.

BMC Bioinformatics 2019 Oct 4;20(1):487. Epub 2019 Oct 4.

Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK2100, Copenhagen N, Denmark.

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http://dx.doi.org/10.1186/s12859-019-3029-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6778389PMC
October 2019

Astrogliogenesis in human fetal brain: complex spatiotemporal immunoreactivity patterns of GFAP, S100, AQP4 and YKL-40.

J Anat 2019 Sep 22;235(3):590-615. Epub 2019 Mar 22.

Faculty of Health and Medical Sciences, Department of Cellular and Molecular Medicine, The Panum Institute, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1111/joa.12948DOI Listing
September 2019

The Landscape of Isoform Switches in Human Cancers.

Mol Cancer Res 2017 09 5;15(9):1206-1220. Epub 2017 Jun 5.

The Bioinformatics Centre, Department of Biology and Biotech Research & Innovation Centre, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1158/1541-7786.MCR-16-0459DOI Listing
September 2017

Identification of a Nuclear Exosome Decay Pathway for Processed Transcripts.

Mol Cell 2016 11 27;64(3):520-533. Epub 2016 Oct 27.

Department of Molecular Biology and Genetics, Aarhus University, C.F. Møllers Allé 3, Building 1130, DK-8000 Aarhus C, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2016.09.025DOI Listing
November 2016

UPF2-Dependent Nonsense-Mediated mRNA Decay Pathway Is Essential for Spermatogenesis by Selectively Eliminating Longer 3'UTR Transcripts.

PLoS Genet 2016 05 5;12(5):e1005863. Epub 2016 May 5.

Department of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1005863DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4858225PMC
May 2016

Amplification of pico-scale DNA mediated by bacterial carrier DNA for small-cell-number transcription factor ChIP-seq.

BMC Genomics 2015 Feb 5;16:46. Epub 2015 Feb 5.

The Finsen Laboratory, Rigshospitalet, Faculty of Health Sciences, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark.

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http://dx.doi.org/10.1186/s12864-014-1195-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4328043PMC
February 2015

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.

Authors:
Erik Arner Carsten O Daub Kristoffer Vitting-Seerup Robin Andersson Berit Lilje Finn Drabløs Andreas Lennartsson Michelle Rönnerblad Olga Hrydziuszko Morana Vitezic Tom C Freeman Ahmad M N Alhendi Peter Arner Richard Axton J Kenneth Baillie Anthony Beckhouse Beatrice Bodega James Briggs Frank Brombacher Margaret Davis Michael Detmar Anna Ehrlund Mitsuhiro Endoh Afsaneh Eslami Michela Fagiolini Lynsey Fairbairn Geoffrey J Faulkner Carmelo Ferrai Malcolm E Fisher Lesley Forrester Daniel Goldowitz Reto Guler Thomas Ha Mitsuko Hara Meenhard Herlyn Tomokatsu Ikawa Chieko Kai Hiroshi Kawamoto Levon M Khachigian S Peter Klinken Soichi Kojima Haruhiko Koseki Sarah Klein Niklas Mejhert Ken Miyaguchi Yosuke Mizuno Mitsuru Morimoto Kelly J Morris Christine Mummery Yutaka Nakachi Soichi Ogishima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry Ovchinnikov Robert Passier Margaret Patrikakis Ana Pombo Xian-Yang Qin Sugata Roy Hiroki Sato Suzana Savvi Alka Saxena Anita Schwegmann Daisuke Sugiyama Rolf Swoboda Hiroshi Tanaka Andru Tomoiu Louise N Winteringham Ernst Wolvetang Chiyo Yanagi-Mizuochi Misako Yoneda Susan Zabierowski Peter Zhang Imad Abugessaisa Nicolas Bertin Alexander D Diehl Shiro Fukuda Masaaki Furuno Jayson Harshbarger Akira Hasegawa Fumi Hori Sachi Ishikawa-Kato Yuri Ishizu Masayoshi Itoh Tsugumi Kawashima Miki Kojima Naoto Kondo Marina Lizio Terrence F Meehan Christopher J Mungall Mitsuyoshi Murata Hiromi Nishiyori-Sueki Serkan Sahin Sayaka Nagao-Sato Jessica Severin Michiel J L de Hoon Jun Kawai Takeya Kasukawa Timo Lassmann Harukazu Suzuki Hideya Kawaji Kim M Summers Christine Wells David A Hume Alistair R R Forrest Albin Sandelin Piero Carninci Yoshihide Hayashizaki

Science 2015 Feb 12;347(6225):1010-4. Epub 2015 Feb 12.

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http://dx.doi.org/10.1126/science.1259418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681433PMC
February 2015

UBL5 is essential for pre-mRNA splicing and sister chromatid cohesion in human cells.

EMBO Rep 2014 Sep 4;15(9):956-64. Epub 2014 Aug 4.

Ubiquitin Signaling Group, Department of Disease Biology, The Novo Nordisk Foundation Center for Protein Research University of Copenhagen, Copenhagen, Denmark

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http://dx.doi.org/10.15252/embr.201438679DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4198039PMC
September 2014

spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.

BMC Bioinformatics 2014 Mar 23;15:81. Epub 2014 Mar 23.

Department of Biology, The Bioinformatics Centre, University of Copenhagen, Ole Maaloes Vej 5, Copenhagen, DK2200, Denmark.

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http://dx.doi.org/10.1186/1471-2105-15-81DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998036PMC
March 2014