Publications by authors named "Kristin Reiche"

29Publications

Alzheimer-related genes show accelerated evolution.

Mol Psychiatry 2020 Mar 13. Epub 2020 Mar 13.

Paul Flechsig Institute of Brain Research, Liebigstraße 19, 04103, Leipzig, Germany.

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http://dx.doi.org/10.1038/s41380-020-0680-1DOI Listing
March 2020

uap: reproducible and robust HTS data analysis.

BMC Bioinformatics 2019 Dec 12;20(1):664. Epub 2019 Dec 12.

Young Investigators Group Bioinformatics and Transcriptomics, Department Molecular Systems Biology, Helmholtz Center for Environmental Research - UFZ, Permoserstraße 15, Leipzig, 04318, Germany.

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http://dx.doi.org/10.1186/s12859-019-3219-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6909466PMC
December 2019

Map and model-moving from observation to prediction in toxicogenomics.

Gigascience 2019 06;8(6)

Department Bioanalytical Ecotoxicology, Helmholtz-Centre for Environmental Research - UFZ, Permoserstr. 15, 04318 Leipzig, Germany.

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http://dx.doi.org/10.1093/gigascience/giz057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6539241PMC
June 2019

The Transcriptome of the Zebrafish Embryo After Chemical Exposure: A Meta-Analysis.

Toxicol Sci 2017 06;157(2):291-304

Department Bioanalytical Ecotoxicology, Helmholtz Centre for Environmental Research - UFZ, Permoserstraße 15, Leipig, Germany.

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http://dx.doi.org/10.1093/toxsci/kfx045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5443304PMC
June 2017

Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved.

RNA 2015 May 23;21(5):801-12. Epub 2015 Mar 23.

Bioinformatics Group, Department of Computer Science, University of Leipzig, D-04107 Leipzig, Germany Interdisciplinary Center for Bioinformatics, University of Leipzig, D-04107 Leipzig, Germany Department of Diagnostics, Fraunhofer Institute for Cell Therapy and Immunology-IZI, D-04103 Leipzig, Germany Max Planck Institute for Mathematics in the Sciences, D-04103 Leipzig, Germany Department of Theoretical Chemistry, University of Vienna, A-1090 Wien, Austria Center for non-coding RNA in Technology and Health, University of Copenhagen, DK-1870 Frederiksberg C, Denmark Santa Fe Institute, Santa Fe, New Mexico 87501, USA.

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http://dx.doi.org/10.1261/rna.046342.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4408788PMC
May 2015

Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes.

PLoS One 2014 29;9(9):e106076. Epub 2014 Sep 29.

Department of Genetics, Institute for Cancer Research, Oslo University Hospital Radiumhospitalet, Oslo, Norway; Department of Pediatric Research, Women and Children's Division, Oslo University Hospital Rikshospitalet, Oslo, Norway.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0106076PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4180073PMC
June 2015

CEM-designer: design of custom expression microarrays in the post-ENCODE Era.

J Biotechnol 2014 Nov 28;189:154-6. Epub 2014 Sep 28.

Young Investigators Group, Bioinformatics and Transcriptomics, Department Proteomics, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany; Bioinformatics Group, Department for Computer Science, University of Leipzig, Leipzig, Germany; RNomics Group, Department of Diagnostics, Fraunhofer Institute for Cell Therapy and Immunology - IZI, Leipzig, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.jbiotec.2014.09.012DOI Listing
November 2014

Detection of differentially expressed segments in tiling array data.

Bioinformatics 2012 Jun 6;28(11):1471-9. Epub 2012 Apr 6.

Bioinformatics Group, Department of Computer Science and Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany.

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http://dx.doi.org/10.1093/bioinformatics/bts142DOI Listing
June 2012

Bioinformatics for RNomics.

Methods Mol Biol 2011 ;719:299-330

Fraunhofer Institute for Cell Therapy and Immunology, Leipzig, Germany.

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http://link.springer.com/10.1007/978-1-61779-027-0_14
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http://dx.doi.org/10.1007/978-1-61779-027-0_14DOI Listing
June 2011

The primary transcriptome of the major human pathogen Helicobacter pylori.

Nature 2010 Mar 17;464(7286):250-5. Epub 2010 Feb 17.

Max Planck Institute for Infection Biology, RNA Biology Group, D-10117 Berlin, Germany.

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http://dx.doi.org/10.1038/nature08756DOI Listing
March 2010

Duplicated RNA genes in teleost fish genomes.

J Bioinform Comput Biol 2008 Dec;6(6):1157-75

Bioinformatics Group, Department of Computer Science, Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany.

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http://dx.doi.org/10.1142/s0219720008003886DOI Listing
December 2008

Structural profiles of human miRNA families from pairwise clustering.

Bioinformatics 2009 Feb 4;25(3):291-4. Epub 2008 Dec 4.

Division of Genetics and Bioinformatics, IBHV, University of Copenhagen, Frederiksberg C, Denmark.

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http://dx.doi.org/10.1093/bioinformatics/btn628DOI Listing
February 2009

NcDNAlign: plausible multiple alignments of non-protein-coding genomic sequences.

Genomics 2008 Jul 3;92(1):65-74. Epub 2008 Jun 3.

Bioinformatics Group, Department of Computer Science, University of Leipzig, Härtelstrasse 16-18, D-04107 Leipzig, Germany.

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http://dx.doi.org/10.1016/j.ygeno.2008.04.003DOI Listing
July 2008

Computational RNomics of drosophilids.

BMC Genomics 2007 Nov 8;8:406. Epub 2007 Nov 8.

Bioinformatics Group, Department of Computer Science, University of Leipzig, Härtelstrasse 16-18, Leipzig, Germany.

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http://dx.doi.org/10.1186/1471-2164-8-406DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2216035PMC
November 2007

RNAstrand: reading direction of structured RNAs in multiple sequence alignments.

Algorithms Mol Biol 2007 May 31;2. Epub 2007 May 31.

Bioinformatics Group, Dept. of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, Germany.

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http://dx.doi.org/10.1186/1748-7188-2-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1892782PMC
May 2007

Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering.

PLoS Comput Biol 2007 Apr 22;3(4):e65. Epub 2007 Feb 22.

Bioinformatics Group, Institute of Computer Science, University of Freiburg, Freiburg, Germany.

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http://dx.doi.org/10.1371/journal.pcbi.0030065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1851984PMC
April 2007