Publications by authors named "Kousik Kundu"

34Publications

The Polygenic and Monogenic Basis of Blood Traits and Diseases.

Authors:
Dragana Vuckovic Erik L Bao Parsa Akbari Caleb A Lareau Abdou Mousas Tao Jiang Ming-Huei Chen Laura M Raffield Manuel Tardaguila Jennifer E Huffman Scott C Ritchie Karyn Megy Hannes Ponstingl Christopher J Penkett Patrick K Albers Emilie M Wigdor Saori Sakaue Arden Moscati Regina Manansala Ken Sin Lo Huijun Qian Masato Akiyama Traci M Bartz Yoav Ben-Shlomo Andrew Beswick Jette Bork-Jensen Erwin P Bottinger Jennifer A Brody Frank J A van Rooij Kumaraswamy N Chitrala Peter W F Wilson Hélène Choquet John Danesh Emanuele Di Angelantonio Niki Dimou Jingzhong Ding Paul Elliott Tõnu Esko Michele K Evans Stephan B Felix James S Floyd Linda Broer Niels Grarup Michael H Guo Qi Guo Andreas Greinacher Jeff Haessler Torben Hansen Joanna M M Howson Wei Huang Eric Jorgenson Tim Kacprowski Mika Kähönen Yoichiro Kamatani Masahiro Kanai Savita Karthikeyan Fotios Koskeridis Leslie A Lange Terho Lehtimäki Allan Linneberg Yongmei Liu Leo-Pekka Lyytikäinen Ani Manichaikul Koichi Matsuda Karen L Mohlke Nina Mononen Yoshinori Murakami Girish N Nadkarni Kjell Nikus Nathan Pankratz Oluf Pedersen Michael Preuss Bruce M Psaty Olli T Raitakari Stephen S Rich Benjamin A T Rodriguez Jonathan D Rosen Jerome I Rotter Petra Schubert Cassandra N Spracklen Praveen Surendran Hua Tang Jean-Claude Tardif Mohsen Ghanbari Uwe Völker Henry Völzke Nicholas A Watkins Stefan Weiss Na Cai Kousik Kundu Stephen B Watt Klaudia Walter Alan B Zonderman Kelly Cho Yun Li Ruth J F Loos Julian C Knight Michel Georges Oliver Stegle Evangelos Evangelou Yukinori Okada David J Roberts Michael Inouye Andrew D Johnson Paul L Auer William J Astle Alexander P Reiner Adam S Butterworth Willem H Ouwehand Guillaume Lettre Vijay G Sankaran Nicole Soranzo

Cell 2020 Sep;182(5):1214-1231.e11

Human Genetics, Wellcome Sanger Institute, Hinxton, CB10 1SA, UK; National Institute for Health Research Blood and Transplant Research Unit (NIHR BTRU) in Donor Health and Genomics, University of Cambridge, Cambridge, CB1 8RN, UK; British Heart Foundation Centre of Excellence, Division of Cardiovascular Medicine, Addenbrooke's Hospital, Cambridge, CB2 0QQ, UK; Department of Haematology, University of Cambridge, Cambridge, CB2 0PT, UK. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2020.08.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7482360PMC
September 2020

Population-wide copy number variation calling using variant call format files from 6,898 individuals.

Genet Epidemiol 2020 01 14;44(1):79-89. Epub 2019 Sep 14.

Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.

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http://dx.doi.org/10.1002/gepi.22260DOI Listing
January 2020

An Efficient Semi-supervised Learning Approach to Predict SH2 Domain Mediated Interactions.

Methods Mol Biol 2017 ;1555:83-97

Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany.

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http://dx.doi.org/10.1007/978-1-4939-6762-9_6DOI Listing
February 2018

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.

Cell 2016 11;167(5):1415-1429.e19

Department of Haematology, University of Cambridge, Cambridge Biomedical Campus, Long Road, Cambridge CB2 0PT, UK; Department of Human Genetics, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1HH, UK; The National Institute for Health Research Blood and Transplant Unit (NIHR BTRU) in Donor Health and Genomics at the University of Cambridge, University of Cambridge, Strangeways Research Laboratory, Wort's Causeway, Cambridge CB1 8RN, UK; British Heart Foundation Centre of Excellence, Division of Cardiovascular Medicine, Addenbrooke's Hospital, Hills Road, Cambridge CB2 0QQ, UK. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2016.10.042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5300907PMC
November 2016

Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells.

Cell 2016 11;167(5):1398-1414.e24

Department of Human Genetics, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1HH, UK; Department of Haematology, University of Cambridge, Cambridge Biomedical Campus, Long Road, Cambridge CB2 0PT, UK; British Heart Foundation Centre of Excellence, Division of Cardiovascular Medicine, Addenbrooke's Hospital, Hills Road, Cambridge CB2 0QQ, UK; The National Institute for Health Research Blood and Transplant Unit (NIHR BTRU) in Donor Health and Genomics at the University of Cambridge, Strangeways Research Laboratory, University of Cambridge, Wort's Causeway, Cambridge CB1 8RN, UK. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674163144
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http://dx.doi.org/10.1016/j.cell.2016.10.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5119954PMC
November 2016

In Vivo Imaging of Retinal Oxidative Stress Using a Reactive Oxygen Species-Activated Fluorescent Probe.

Invest Ophthalmol Vis Sci 2015 Sep;56(10):5862-70

Department of Ophthalmology, Emory University, Atlanta, Georgia, United States 2Atlanta VA Center for Visual and Neurocognitive Rehabilitation, Atlanta, Georgia, United States.

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http://dx.doi.org/10.1167/iovs.15-16810DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4566416PMC
September 2015

MoDPepInt: an interactive web server for prediction of modular domain-peptide interactions.

Bioinformatics 2014 Sep 28;30(18):2668-9. Epub 2014 May 28.

Bioinformatics Group, Department of Computer Science, 79110 Freiburg and Centre for Biological Signalling Studies (BIOSS), 79104 Freiburg, University of Freiburg, Germany Bioinformatics Group, Department of Computer Science, 79110 Freiburg and Centre for Biological Signalling Studies (BIOSS), 79104 Freiburg, University of Freiburg, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btu350DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155253PMC
September 2014

Muscadine grape skin extract reverts snail-mediated epithelial mesenchymal transition via superoxide species in human prostate cancer cells.

BMC Complement Altern Med 2014 Mar 12;14:97. Epub 2014 Mar 12.

Center for Cancer Research and Therapeutic Development, Department of Biological Sciences, Clark Atlanta University, 223 James P Brawley Dr SW, 30314 Atlanta, GA, USA.

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http://dx.doi.org/10.1186/1472-6882-14-97DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3984701PMC
March 2014

Cluster based prediction of PDZ-peptide interactions.

BMC Genomics 2014 24;15 Suppl 1:S5. Epub 2014 Jan 24.

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http://dx.doi.org/10.1186/1471-2164-15-S1-S5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4046824PMC
November 2014

A fluorescent peroxidase probe increases the sensitivity of commercial ELISAs by two orders of magnitude.

Chem Commun (Camb) 2013 Nov;49(88):10379-81

Department of Bioengineering, University of California, Berkeley, California 94720, USA.

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http://dx.doi.org/10.1039/c3cc44783aDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4011665PMC
November 2013

A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domains.

Bioinformatics 2013 Jul;29(13):i335-43

Bioinformatics Group, Department of Computer Science, Georges-Köhler-Allee 106, 79110 Freiburg, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btt220DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694653PMC
July 2013

Annexin A1, formyl peptide receptor, and NOX1 orchestrate epithelial repair.

J Clin Invest 2013 Jan 17;123(1):443-54. Epub 2012 Dec 17.

Epithelial Pathobiology and Mucosal Inflammation Research Unit, Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.

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http://dx.doi.org/10.1172/JCI65831DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3533303PMC
January 2013

Ultrasound imaging of oxidative stress in vivo with chemically-generated gas microbubbles.

Ann Biomed Eng 2012 Sep 5;40(9):2059-68. Epub 2012 May 5.

The Wallace H. Coulter Department of Biomedical Engineering, Parker H. Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, 315 Ferst Drive, Atlanta, GA 30332, USA.

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http://link.springer.com/10.1007/s10439-012-0573-9
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http://dx.doi.org/10.1007/s10439-012-0573-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4029424PMC
September 2012

Folate receptor-targeted antioxidant therapy ameliorates renal ischemia-reperfusion injury.

J Am Soc Nephrol 2012 May 26;23(5):793-800. Epub 2012 Jan 26.

Division of Cardiology, Department of Medicine, Emory University School of Medicine, Atlanta, GA 30322, USA.

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http://www.jasn.org/cgi/doi/10.1681/ASN.2011070711
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http://dx.doi.org/10.1681/ASN.2011070711DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338292PMC
May 2012

Nadph oxidase regulates alveolar epithelial sodium channel activity and lung fluid balance in vivo via O⁻₂ signaling.

Am J Physiol Lung Cell Mol Physiol 2012 Feb 9;302(4):L410-9. Epub 2011 Dec 9.

Department of Physiology, Center for Developmental Lung Biology at Children's Healthcare of Atlanta, USA.

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http://www.physiology.org/doi/10.1152/ajplung.00260.2011
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http://dx.doi.org/10.1152/ajplung.00260.2011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3289267PMC
February 2012

Redox signaling in an in vivo murine model of low magnitude oscillatory wall shear stress.

Antioxid Redox Signal 2011 Sep 18;15(5):1369-78. Epub 2011 Feb 18.

The Wallace H. Coulter Department of Biomedical Engineering, Emory University School of Medicine, Atlanta, Georgia 30322, USA.

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http://dx.doi.org/10.1089/ars.2010.3550DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3144422PMC
September 2011

A significant improvement of the efficacy of radical oxidant probes by the kinetic isotope effect.

Angew Chem Int Ed Engl 2010 Aug;49(35):6134-8

The Wallace H. Coulter Department of Biomedical Engineering and Parker H. Petit Institute of Bioengineering and Biosciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.

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http://dx.doi.org/10.1002/anie.201002228DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2929654PMC
August 2010

Lactobacillus rhamnosus blocks inflammatory signaling in vivo via reactive oxygen species generation.

Free Radic Biol Med 2009 Oct 3;47(8):1205-11. Epub 2009 Aug 3.

Division of Neonatal-Perinatal Medicine, Emory University School of Medicine, Atlanta, GA 30322, USA.

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http://dx.doi.org/10.1016/j.freeradbiomed.2009.07.033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2760264PMC
October 2009

Hydrocyanines: a class of fluorescent sensors that can image reactive oxygen species in cell culture, tissue, and in vivo.

Angew Chem Int Ed Engl 2009 ;48(2):299-303

The Wallace H. Coulter Department of Biomedical Engineering and Parker H. Petit Institute of Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA 30332, USA.

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http://dx.doi.org/10.1002/anie.200804851DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5935505PMC
February 2009

Hydroacylation of 2-vinyl benzaldehyde systems: an efficient method for the synthesis of chiral 3-substituted indanones.

J Am Chem Soc 2005 Nov;127(46):16042-3

Department of Chemistry, East Carolina University, Greenville, North Carolina 27858, USA.

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http://dx.doi.org/10.1021/ja0564416DOI Listing
November 2005

Catalytic addition methods for the synthesis of functionalized diazoacetoacetates and application to the construction of highly substituted cyclobutanones.

Org Lett 2005 Nov;7(23):5171-4

Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland 20742, USA.

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http://pubs.acs.org/doi/abs/10.1021/ol052003s
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http://dx.doi.org/10.1021/ol052003sDOI Listing
November 2005

A readily prepared neutral heterobimetallic titanium(IV)-rhodium(I) catalyst for intramolecular hydroacylation.

Chem Commun (Camb) 2005 Jul 1(26):3307-9. Epub 2005 Jun 1.

Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland 20742, USA.

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http://xlink.rsc.org/?DOI=b504195c
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http://dx.doi.org/10.1039/b504195cDOI Listing
July 2005