Kousaku Okubo

Kousaku Okubo

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Kousaku Okubo

Kousaku Okubo

Publications by authors named "Kousaku Okubo"

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DNA Data Bank of Japan: 30th anniversary.

Nucleic Acids Res 2018 01;46(D1):D30-D35

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan.

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http://dx.doi.org/10.1093/nar/gkx926DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753283PMC
January 2018

DNA Data Bank of Japan.

Nucleic Acids Res 2017 01 24;45(D1):D25-D31. Epub 2016 Oct 24.

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan

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http://dx.doi.org/10.1093/nar/gkw1001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210514PMC
January 2017

DNA data bank of Japan (DDBJ) progress report.

Nucleic Acids Res 2016 Jan 17;44(D1):D51-7. Epub 2015 Nov 17.

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan

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http://dx.doi.org/10.1093/nar/gkv1105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702806PMC
January 2016

The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.

Nucleic Acids Res 2015 Jan 3;43(Database issue):D18-22. Epub 2014 Dec 3.

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan

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http://dx.doi.org/10.1093/nar/gku1120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383935PMC
January 2015

DDBJ progress report: a new submission system for leading to a correct annotation.

Nucleic Acids Res 2014 Jan 4;42(Database issue):D44-9. Epub 2013 Nov 4.

DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan.

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http://dx.doi.org/10.1093/nar/gkt1066DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964987PMC
January 2014

DDBJ new system and service refactoring.

Nucleic Acids Res 2013 Jan 24;41(Database issue):D25-9. Epub 2012 Nov 24.

DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan.

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http://dx.doi.org/10.1093/nar/gks1152DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531146PMC
January 2013

The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.

Nucleic Acids Res 2012 Jan 22;40(Database issue):D38-42. Epub 2011 Nov 22.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems, Yata, Mishima 411-8510, Japan.

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http://dx.doi.org/10.1093/nar/gkr994DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244990PMC
January 2012

DDBJ progress report.

Nucleic Acids Res 2011 Jan 9;39(Database issue):D22-7. Epub 2010 Nov 9.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems, Yata, Mishima 411-8510, Japan.

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http://dx.doi.org/10.1093/nar/gkq1041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013661PMC
January 2011

DDBJ launches a new archive database with analytical tools for next-generation sequence data.

Nucleic Acids Res 2010 Jan 22;38(Database issue):D33-8. Epub 2009 Oct 22.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems, Yata, Mishima 411-8510, Japan.

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http://dx.doi.org/10.1093/nar/gkp847DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808917PMC
January 2010

On theoretical models of gene expression evolution with random genetic drift and natural selection.

PLoS One 2009 Nov 20;4(11):e7943. Epub 2009 Nov 20.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Mishima, Shizuoka, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007943PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2776274PMC
November 2009

BodyParts3D: 3D structure database for anatomical concepts.

Nucleic Acids Res 2009 Jan 3;37(Database issue):D782-5. Epub 2008 Oct 3.

Database Center for Life Science, Research Organization of Information and Systems, Faculty of Engineering Bldg.12, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1093/nar/gkn613DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686534PMC
January 2009

Cornichon-like protein facilitates secretion of HB-EGF and regulates proper development of cranial nerves.

Mol Biol Cell 2007 Apr 17;18(4):1143-52. Epub 2007 Jan 17.

Department of Cell and Developmental Biology, Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.

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http://www.molbiolcell.org/doi/10.1091/mbc.e06-08-0733
Publisher Site
http://dx.doi.org/10.1091/mbc.e06-08-0733DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839001PMC
April 2007

Quantification of gene expression in mouse and human renal proximal tubules.

Methods Mol Biol 2005 ;293:209-19

Department of Internal Medicine and Therapeutics, Osaka University Graduate School of Medicine, Japan.

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http://dx.doi.org/10.1385/1-59259-853-6:209DOI Listing
June 2006

DDBJ in preparation for overview of research activities behind data submissions.

Nucleic Acids Res 2006 Jan;34(Database issue):D6-9

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics Research Organization of Information and Systems, Yata, Mishima, 411-8540, Japan.

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http://dx.doi.org/10.1093/nar/gkj111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347473PMC
January 2006

BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression.

Nucleic Acids Res 2006 Jan;34(Database issue):D628-31

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan.

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http://dx.doi.org/10.1093/nar/gkj137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347499PMC
January 2006

[Human transcriptome].

Tanpakushitsu Kakusan Koso 2005 Dec;50(16 Suppl):2059-64

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December 2005

[Why biology needs to study what biology knows?].

Authors:
Kousaku Okubo

Tanpakushitsu Kakusan Koso 2005 Dec;50(16 Suppl):2250-4

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December 2005

Indexing anatomical concepts to OMIM Clinical Synopsis using the UMLS Metathesaurus.

In Silico Biol 2004 28;4(1):31-54. Epub 2003 Dec 28.

Biological Information Research Center, National Institute of Advanced Industrial Science and Technology.

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December 2004

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Authors:
Tadashi Imanishi Takeshi Itoh Yutaka Suzuki Claire O'Donovan Satoshi Fukuchi Kanako O Koyanagi Roberto A Barrero Takuro Tamura Yumi Yamaguchi-Kabata Motohiko Tanino Kei Yura Satoru Miyazaki Kazuho Ikeo Keiichi Homma Arek Kasprzyk Tetsuo Nishikawa Mika Hirakawa Jean Thierry-Mieg Danielle Thierry-Mieg Jennifer Ashurst Libin Jia Mitsuteru Nakao Michael A Thomas Nicola Mulder Youla Karavidopoulou Lihua Jin Sangsoo Kim Tomohiro Yasuda Boris Lenhard Eric Eveno Yoshiyuki Suzuki Chisato Yamasaki Jun-ichi Takeda Craig Gough Phillip Hilton Yasuyuki Fujii Hiroaki Sakai Susumu Tanaka Clara Amid Matthew Bellgard Maria de Fatima Bonaldo Hidemasa Bono Susan K Bromberg Anthony J Brookes Elspeth Bruford Piero Carninci Claude Chelala Christine Couillault Sandro J de Souza Marie-Anne Debily Marie-Dominique Devignes Inna Dubchak Toshinori Endo Anne Estreicher Eduardo Eyras Kaoru Fukami-Kobayashi Gopal R Gopinath Esther Graudens Yoonsoo Hahn Michael Han Ze-Guang Han Kousuke Hanada Hideki Hanaoka Erimi Harada Katsuyuki Hashimoto Ursula Hinz Momoki Hirai Teruyoshi Hishiki Ian Hopkinson Sandrine Imbeaud Hidetoshi Inoko Alexander Kanapin Yayoi Kaneko Takeya Kasukawa Janet Kelso Paul Kersey Reiko Kikuno Kouichi Kimura Bernhard Korn Vladimir Kuryshev Izabela Makalowska Takashi Makino Shuhei Mano Regine Mariage-Samson Jun Mashima Hideo Matsuda Hans-Werner Mewes Shinsei Minoshima Keiichi Nagai Hideki Nagasaki Naoki Nagata Rajni Nigam Osamu Ogasawara Osamu Ohara Masafumi Ohtsubo Norihiro Okada Toshihisa Okido Satoshi Oota Motonori Ota Toshio Ota Tetsuji Otsuki Dominique Piatier-Tonneau Annemarie Poustka Shuang-Xi Ren Naruya Saitou Katsunaga Sakai Shigetaka Sakamoto Ryuichi Sakate Ingo Schupp Florence Servant Stephen Sherry Rie Shiba Nobuyoshi Shimizu Mary Shimoyama Andrew J Simpson Bento Soares Charles Steward Makiko Suwa Mami Suzuki Aiko Takahashi Gen Tamiya Hiroshi Tanaka Todd Taylor Joseph D Terwilliger Per Unneberg Vamsi Veeramachaneni Shinya Watanabe Laurens Wilming Norikazu Yasuda Hyang-Sook Yoo Marvin Stodolsky Wojciech Makalowski Mitiko Go Kenta Nakai Toshihisa Takagi Minoru Kanehisa Yoshiyuki Sakaki John Quackenbush Yasushi Okazaki Yoshihide Hayashizaki Winston Hide Ranajit Chakraborty Ken Nishikawa Hideaki Sugawara Yoshio Tateno Zhu Chen Michio Oishi Peter Tonellato Rolf Apweiler Kousaku Okubo Lukas Wagner Stefan Wiemann Robert L Strausberg Takao Isogai Charles Auffray Nobuo Nomura Takashi Gojobori Sumio Sugano

PLoS Biol 2004 Jun 20;2(6):e162. Epub 2004 Apr 20.

Integrated Database Group, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.

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http://dx.doi.org/10.1371/journal.pbio.0020162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC393292PMC
June 2004

Identification and characterization of a novel component of the cornified envelope, cornifelin.

Biochem Biophys Res Commun 2004 Jun;318(4):803-13

Advanced Medical Research Laboratories, Tanabe Seiyaku Co. Ltd., 16-89 Kashima-3-chome, Yodogawa-ku, Osaka 532-8505, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2004.04.109DOI Listing
June 2004

Zipf's law and human transcriptomes: an explanation with an evolutionary model.

C R Biol 2003 Oct-Nov;326(10-11):1097-101

Division of Gene Expression analysis, The Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Mishima 411-8540, Shizuoka, Japan.

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http://dx.doi.org/10.1016/j.crvi.2003.09.031DOI Listing
May 2004

Cloning of a gene for a novel epithelium-specific cytosolic phospholipase A2, cPLA2delta, induced in psoriatic skin.

J Biol Chem 2004 Mar 6;279(13):12890-7. Epub 2004 Jan 6.

Discovery and Pharmacology Research Laboratories, Tanabe Seiyaku Co. Ltd., 16-89 Kashima 3-chome, Yodogawa-ku, Osaka 532-8505, Japan.

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http://dx.doi.org/10.1074/jbc.M305801200DOI Listing
March 2004

A novel diacylglycerol acyltransferase (DGAT2) is decreased in human psoriatic skin and increased in diabetic mice.

Biochem Biophys Res Commun 2003 Oct;310(2):296-302

Discovery Research Laboratory, Advanced Medical Research Department, Tanabe Seiyaku Co., Ltd, 3-16-89 Kashima, Yodogawa-ku, Osaka 532-8505, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2003.09.015DOI Listing
October 2003

Up-regulated gene expression in the conjunctival epithelium of patients with Sjögren's syndrome.

Exp Eye Res 2003 Jul;77(1):17-26

Kyoto Prefectural University of Medicine, 465 Kajii-cho, Hirokoji-agaru, Kawaramachi-dori, Kamigyo-ku, Kyoto 602-0841, Japan.

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http://dx.doi.org/10.1016/s0014-4835(03)00087-3DOI Listing
July 2003

Construction of human corneal endothelial cDNA library and identification of novel active genes.

Invest Ophthalmol Vis Sci 2002 Jun;43(6):1749-56

Department of Ophthalmology, Jichi Medical School, Kawachi-gun, Tochigi, Japan.

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June 2002

[Expression map of human genes: between genome and proteome].

Tanpakushitsu Kakusan Koso 2002 Jun;47(8 Suppl):906-13

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June 2002

Gene expression profile of renal proximal tubules regulated by proteinuria.

Kidney Int 2002 May;61(5):1577-87

Department of Internal Medicine and Therapeutics, Osaka University Graduate School of Medicine, School of Allied Health Sciences, and Institute for Molecular and Cellular Biology, Osaka University, Osaka, Japan.

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http://dx.doi.org/10.1046/j.1523-1755.2002.00300.xDOI Listing
May 2002