Konstantin Popadin

Konstantin Popadin

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Konstantin Popadin

Konstantin Popadin

Publications by authors named "Konstantin Popadin"

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Correction to: ImtRDB: a database and software for mitochondrial imperfect interspersed repeats annotation.

BMC Genomics 2019 07 8;20(1):556. Epub 2019 Jul 8.

Center for Mitochondrial Functional Genomics, School of Life Science, Immanuel Kant Baltic Federal University, Kaliningrad, Russia.

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http://dx.doi.org/10.1186/s12864-019-5950-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6613262PMC
July 2019

ImtRDB: a database and software for mitochondrial imperfect interspersed repeats annotation.

BMC Genomics 2019 05 8;20(Suppl 3):295. Epub 2019 May 8.

Center for Mitochondrial Functional Genomics, School of Life Science, Immanuel Kant Baltic Federal University, Kaliningrad, Russia.

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http://dx.doi.org/10.1186/s12864-019-5536-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6614062PMC
May 2019

mtProtEvol: the resource presenting molecular evolution analysis of proteins involved in the function of Vertebrate mitochondria.

BMC Evol Biol 2019 02 26;19(Suppl 1):47. Epub 2019 Feb 26.

Center for Mitochondrial Functional Genomics, School of Life Science, Immanuel Kant Baltic Federal University, Kaliningrad, Russia.

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http://dx.doi.org/10.1186/s12862-019-1371-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6391778PMC
February 2019

DNA-Methylation Patterns in Trisomy 21 Using Cells from Monozygotic Twins.

PLoS One 2015 28;10(8):e0135555. Epub 2015 Aug 28.

Department of Genetic Medicine and Development, University of Geneva, Geneva, Switzerland; National Center of Competence in Research Frontiers in Genetics Program, University of Geneva, Geneva, Switzerland; iGE3 institute of Genetics and Genomics of Geneva, University of Geneva, Geneva, Switzerland.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0135555PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4552626PMC
May 2016

APOBEC-induced mutations in human cancers are strongly enriched on the lagging DNA strand during replication.

Genome Res 2016 Feb 11;26(2):174-82. Epub 2016 Jan 11.

Department of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva, Switzerland; Institute of Genetics and Genomics in Geneva, 1211 Geneva, Switzerland; Service of Genetic Medicine, University Hospitals of Geneva, 1211 Geneva, Switzerland.

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http://dx.doi.org/10.1101/gr.197046.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4728370PMC
February 2016

Biased allelic expression in human primary fibroblast single cells.

Am J Hum Genet 2015 Jan 31;96(1):70-80. Epub 2014 Dec 31.

Department of Genetic Medicine and Development, University of Geneva, 1211 Geneva, Switzerland; Institute of Genetics and Genomics of Geneva, 1211 Geneva, Switzerland; Service of Genetic Medicine, University Hospitals of Geneva, 1211 Geneva, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.12.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4289680PMC
January 2015

Gene age predicts the strength of purifying selection acting on gene expression variation in humans.

Am J Hum Genet 2014 Dec;95(6):660-74

Department of Genetic Medicine and Development, University of Geneva Medical School, 1 Rue Michel-Servet, 1211 Geneva, Switzerland; Institute of Genetics and Genomics in Geneva, 1211 Geneva, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.11.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4259975PMC
December 2014

Mitochondrial DNA mutations and cancer: lessons from the parathyroid.

Am J Pathol 2014 Nov 19;184(11):2852-4. Epub 2014 Sep 19.

Department of Biology, Northeastern University, Boston, Massachusetts; Department of Pharmaceutical Sciences, Northeastern University, Boston, Massachusetts. Electronic address:

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http://dx.doi.org/10.1016/j.ajpath.2014.09.001DOI Listing
November 2014

When man got his mtDNA deletions?

Aging Cell 2014 Aug 4;13(4):579-82. Epub 2014 Jun 4.

University of Geneva Medical School, Geneva, Switzerland.

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http://dx.doi.org/10.1111/acel.12231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4326951PMC
August 2014

Roles of mitochondrial dynamics under stressful and normal conditions in yeast cells.

Oxid Med Cell Longev 2013 14;2013:139491. Epub 2013 Jul 14.

Belozersky Institute of Physico-Chemical Biology, Moscow State University, Vorobyevy Gory 1, Moscow 119992, Russia.

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http://dx.doi.org/10.1155/2013/139491DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3728513PMC
February 2014

Genetic and epigenetic regulation of human lincRNA gene expression.

Am J Hum Genet 2013 Dec 21;93(6):1015-26. Epub 2013 Nov 21.

Department of Genetic Medicine and Development, University of Geneva Medical School, 1 rue Michel-Servet, 1211 Geneva, Switzerland; Institute of Genetics and Genomics in Geneva (iGE3), 1211 Geneva, Switzerland; Institute for Information Transmission Problems (Kharkevich Institute), Russian Academy of Sciences, Moscow 127994, Russia.

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http://dx.doi.org/10.1016/j.ajhg.2013.10.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852921PMC
December 2013

Purifying selection in mammalian mitochondrial protein-coding genes is highly effective and congruent with evolution of nuclear genes.

Mol Biol Evol 2013 Feb 14;30(2):347-55. Epub 2012 Sep 14.

Department of Genetic Medicine and Development, University of Geneva Medical School and iGE3 Institute of Genetics and Genomics of Geneva, Switzerland.

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http://dx.doi.org/10.1093/molbev/mss219DOI Listing
February 2013

Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements.

Proc Natl Acad Sci U S A 2007 Dec 11;104(51):20443-8. Epub 2007 Dec 11.

Department of Genetic Medicine and Development, University of Geneva Medical School, 1 Rue Michel-Servet, 1211 Geneva, Switzerland.

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http://dx.doi.org/10.1073/pnas.0705658104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2154450PMC
December 2007

A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures.

BMC Bioinformatics 2007 Nov 14;8:441. Epub 2007 Nov 14.

Institute for Information Transmission Problems RAS, Bolshoi Karetny pereulok 19, Moscow.

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http://dx.doi.org/10.1186/1471-2105-8-441DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2206058PMC
November 2007

Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals.

Proc Natl Acad Sci U S A 2007 Aug 6;104(33):13390-5. Epub 2007 Aug 6.

Departments of Genetics, Biological Faculty of M.V. Lomonosov Moscow State University, Vorobyevy Gory 1-12, Moscow 119992, Russia.

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http://dx.doi.org/10.1073/pnas.0701256104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1948928PMC
August 2007

Purifying selection in mitochondria, free-living and obligate intracellular proteobacteria.

BMC Evol Biol 2007 Feb 12;7:17. Epub 2007 Feb 12.

Institute for Information Transmission Problems RAS, Bolshoi Karetny pereulok 19, Moscow 127994, Russia.

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http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2148-7-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1803777PMC
February 2007