Publications by authors named "Konstantin Okonechnikov"

18Publications

Probing Medulloblastoma Initiation at the Single-Cell Level.

Trends Cancer 2019 12 28;5(12):759-761. Epub 2019 Oct 28.

Hopp-Children's Cancer Center Heidelberg (KiTZ), 69120 Heidelberg, Germany; Division of Pediatric Neurooncology, German Cancer Research Center (DKFZ) and German Cancer Consortium (DKTK), 69120 Heidelberg, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.trecan.2019.10.002DOI Listing
December 2019

InTAD: chromosome conformation guided analysis of enhancer target genes.

BMC Bioinformatics 2019 Jan 31;20(1):60. Epub 2019 Jan 31.

Department of Medicine, Division of Medical Genetics, University of California San Diego (UCSD), San Diego, USA.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s12859-019-2655-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6357397PMC
January 2019

Therapeutic targeting of ependymoma as informed by oncogenic enhancer profiling.

Nature 2018 01 20;553(7686):101-105. Epub 2017 Dec 20.

Department of Stem Cell Biology and Regenerative Medicine, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA.

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http://dx.doi.org/10.1038/nature25169DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5993422PMC
January 2018

Genetic characterization of an adapted pandemic 2009 H1N1 influenza virus that reveals improved replication rates in human lung epithelial cells.

Virology 2016 May 23;492:118-29. Epub 2016 Feb 23.

Department of Molecular Biology, Max Planck Institute for Infection Biology, Berlin, Germany; Steinbeis Innovation gGmbH, Center for Systems Biomedicine, Falkensee, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.virol.2016.02.002DOI Listing
May 2016

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.

Bioinformatics 2016 Jan 1;32(2):292-4. Epub 2015 Oct 1.

Department of Molecular Biology, Max Planck Institute for Infection Biology, D-10117, Berlin, Germany.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btv566DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4708105PMC
January 2016

Qualimap: evaluating next-generation sequencing alignment data.

Bioinformatics 2012 Oct 22;28(20):2678-9. Epub 2012 Aug 22.

Bioinformatics and Genomics Department, Centro de Investigación Príncipe Felipe, Valencia, Spain.

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http://dx.doi.org/10.1093/bioinformatics/bts503DOI Listing
October 2012

Unipro UGENE: a unified bioinformatics toolkit.

Bioinformatics 2012 Apr 24;28(8):1166-7. Epub 2012 Feb 24.

Unipro Center for Information Technologies, Novosibirsk, Russia.

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http://bioinformatics.oxfordjournals.org/content/early/2012/
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http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
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http://dx.doi.org/10.1093/bioinformatics/bts091DOI Listing
April 2012