Publications by authors named "Kohta Ikegami"

19Publications

Nuclear lamin phosphorylation: an emerging role in gene regulation and pathogenesis of laminopathies.

Nucleus 2020 Dec;11(1):299-314

Department of Pediatrics, The University of Chicago , Chicago, Illinois, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1080/19491034.2020.1832734DOI Listing
December 2020

Transcriptional Patterning of the Ventricular Cardiac Conduction System.

Circ Res 2020 Jul 15;127(3):e94-e106. Epub 2020 Apr 15.

From the Department of Pediatrics (O.B.-T., J.D.S., K.I., R.D.N., D.E.A., X.H.Y., I.P.M.), University of Chicago, Chicago, IL.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1161/CIRCRESAHA.118.314460DOI Listing
July 2020

Phosphorylated Lamin A/C in the Nuclear Interior Binds Active Enhancers Associated with Abnormal Transcription in Progeria.

Dev Cell 2020 03;52(6):699-713.e11

Department of Pediatrics, The University of Chicago, Chicago, IL 60637, USA; Department of Human Genetics, The University of Chicago, Chicago, IL 60637, USA; Department of Pathology, The University of Chicago, Chicago, IL 60637, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.devcel.2020.02.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7201903PMC
March 2020

Transcription-independent TFIIIC-bound sites cluster near heterochromatin boundaries within lamina-associated domains in C. elegans.

Epigenetics Chromatin 2020 01 9;13(1). Epub 2020 Jan 9.

Department of Pediatrics, The University of Chicago, Chicago, IL, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13072-019-0325-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6950938PMC
January 2020

Comparative analysis of metazoan chromatin organization.

Nature 2014 Aug;512(7515):449-52

1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [3] Informatics Program, Children's Hospital, Boston, Massachusetts 02215, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature13415DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4227084PMC
August 2014

Reduced insulin/IGF-1 signaling restores germ cell immortality to Caenorhabditis elegans Piwi mutants.

Cell Rep 2014 May 24;7(3):762-73. Epub 2014 Apr 24.

Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA; Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA; Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, NC 27599, USA. Electronic address:

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S22111247140025
Publisher Site
http://dx.doi.org/10.1016/j.celrep.2014.03.056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4049074PMC
May 2014

TRA-1 ChIP-seq reveals regulators of sexual differentiation and multilevel feedback in nematode sex determination.

Proc Natl Acad Sci U S A 2013 Oct 17;110(40):16033-8. Epub 2013 Sep 17.

Department of Genetics, Cell Biology, and Development and Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1312087110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3791753PMC
October 2013

Integral nuclear pore proteins bind to Pol III-transcribed genes and are required for Pol III transcript processing in C. elegans.

Mol Cell 2013 Sep 5;51(6):840-9. Epub 2013 Sep 5.

Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA; Carolina Center for Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.molcel.2013.08.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3788088PMC
September 2013

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1196914DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3142569PMC
December 2010

Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2.

Genome Biol 2010 23;11(12):R120. Epub 2010 Dec 23.

Department of Biology, Carolina Center for Genome Sciences and Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, 407 Fordham Hall, Chapel Hill, North Carolina 27599, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2010-11-12-r120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3046480PMC
June 2011

Nucleoporins and transcription: new connections, new questions.

PLoS Genet 2010 Feb 26;6(2):e1000861. Epub 2010 Feb 26.

Department of Biology, Carolina Center for Genome Sciences and Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pgen.1000861DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829065PMC
February 2010

Interplay between DNA methylation, histone modification and chromatin remodeling in stem cells and during development.

Int J Dev Biol 2009 ;53(2-3):203-14

Laboratory of Cellular Biochemistry, Animal Resource Sciences / Veterinary Medical Sciences, Graduate School of Agriculture and Life Sciences, The University of Tokyo, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1387/ijdb.082741kiDOI Listing
September 2009

Genome-wide and locus-specific DNA hypomethylation in G9a deficient mouse embryonic stem cells.

Genes Cells 2007 Jan;12(1):1-11

Laboratory of Cellular Biochemistry, Department of Animal Resource Sciences and Veterinary Medical Sciences, The University of Tokyo, Tokyo 113-8657, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1365-2443.2006.01029.xDOI Listing
January 2007

Dimethyl sulfoxide has an impact on epigenetic profile in mouse embryoid body.

Stem Cells 2006 Nov 13;24(11):2549-56. Epub 2006 Jul 13.

Laboratory of Cellular Biochemistry, Department of Animal Resource Sciences/Veterinary Medical Sciences, The University of Tokyo, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1634/stemcells.2005-0427DOI Listing
November 2006