Kimberly Van Auken

Kimberly Van Auken

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Kimberly Van Auken

Kimberly Van Auken

Publications by authors named "Kimberly Van Auken"

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Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology.

J Biomed Inform 2016 Apr 10;60:199-209. Epub 2016 Feb 10.

Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305-5479, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2016.02.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836980PMC
April 2016

BC4GO: a full-text corpus for the BioCreative IV GO task.

Database (Oxford) 2014 28;2014. Epub 2014 Jul 28.

WormBase, Division of Biology, California Institute of Technology, 1200 E. California Blvd., Pasadena, CA 91125, USA, USDA-ARS Plant Genetics Research Unit and Division of Plant Sciences, Department of Agronomy, University of Missouri, Columbia, MO 65211, USA, FlyBase, Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, UK, Rat Genome Database, Human and Molecular Genetics Center, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA, TAIR, Department of Plant Biology, Carnegie Institution for Science, 260 Panama Street, Stanford, CA 94305, USA, Center for Bioinformatics and Computational Biology, University of Delaware, 15 Innovation Way, Newark, DE 19711, USA, Howard Hughes Medical Institute, California Institute of Technology, 1200 E. California Blvd., Pasadena, CA 91125, USA, National Center for Biotechnology Information (NCBI), 8600 Rockville Pike, Bethesda, MD 20894, USA

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http://dx.doi.org/10.1093/database/bau074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4112614PMC
February 2015

Overview of the gene ontology task at BioCreative IV.

Database (Oxford) 2014 25;2014. Epub 2014 Aug 25.

National Center for Biotechnology Information (NCBI), National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20817, USA WormBase, Division of Biology, California Institute of Technology, 1200 E. California Boulevard, Pasadena, CA 91125, USA, TAIR, Department of Plant Biology, The Arabidopsis Information Resource, Carnegie Institution for Science, Stanford, CA 94305, USA, Center for Bioinformatics and Computational Biology, University of Delaware, 15 Innovation Way, Newark, DE 19711, USA, FlyBase, Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, UK, Rat Genome Database, Human and Molecular Genetics Center, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA, USDA-ARS Plant Genetics Research Unit and Division of Plant Sciences, Department of Agronomy, University of Missouri, Columbia, MO 65211, USA, HES-SO, HEG, Library and Information Sciences, 7 route de Drize, CH-1227 Carouge, Switzerland, SIBtex, Swiss Institute of Bioinformatics, Rue Michel Servet 1, 1211 Geneva 4, Switzerland, School of Computer Engineering, Nanyang Technological University, Block N4, #02a-32, Nanyang Avenue, Singapore 639798, Department of Computer Science and Information Engineering, National Cheng-Kung University, No. 1, University Rd., Tainan 701, Taiwan, Republic of China, Department of Radiology, Mackay Memorial Hospital, Taitung Branch, Lane 303 Chang Sha St. Taitung, Taiwan, Republic of China, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA, Department of Computer Science, University of Delaware, 101 Smith Hall, Newark, DE 19716, USA, Department of Quantitative Health Sciences, University of Massachusetts Medical School, 55 Lake Avenue North (AC7-059), Worcester, MA 01655 USA, Department of Biomedical Informatics, Arizona State University, 13212 East Shea Boulevard Scottsdale, AZ 85259 USA, Institute of Information Science, Academia Sinica, 128 Academia Road, Secti

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http://dx.doi.org/10.1093/database/bau086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4142793PMC
February 2015

WormBase 2014: new views of curated biology.

Nucleic Acids Res 2014 Jan 4;42(Database issue):D789-93. Epub 2013 Nov 4.

Informatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada, Genome Sequencing Center, Washington University, School of Medicine, St Louis, MO 63108, USA, Division of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA, European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, Department of Genetics Campus, Washington University School of Medicine, St. Louis, MO 63110, USA, Genetics Unit, Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK and Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1093/nar/gkt1063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965043PMC
January 2014

A guide to best practices for Gene Ontology (GO) manual annotation.

Database (Oxford) 2013 9;2013:bat054. Epub 2013 Jul 9.

Saccharomyces Genome Database, Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, CA 94305, USA.

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http://dx.doi.org/10.1093/database/bat054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3706743PMC
October 2013

The BioGRID Interaction Database: 2011 update.

Nucleic Acids Res 2011 Jan 11;39(Database issue):D698-704. Epub 2010 Nov 11.

Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto M5G 1X5, Canada.

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http://dx.doi.org/10.1093/nar/gkq1116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013707PMC
January 2011

Roles of the Homothorax/Meis/Prep homolog UNC-62 and the Exd/Pbx homologs CEH-20 and CEH-40 in C. elegans embryogenesis.

Development 2002 Nov;129(22):5255-68

Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309-0347, USA.

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November 2002