Publications by authors named "Kim-Anh Do"

100Publications

Compositional zero-inflated network estimation for microbiome data.

BMC Bioinformatics 2020 Dec 28;21(Suppl 21):581. Epub 2020 Dec 28.

Department of Biostatistics, University of Texas MD Anderson Cancer Center, 1400 Pressler St., Houston, TX, USA.

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December 2020

Bayesian compositional regression with structured priors for microbiome feature selection.

Biometrics 2020 Jul 20. Epub 2020 Jul 20.

Department of Biostatistics, University of Texas MD Anderson Cancer Center, Houston, Texas.

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July 2020

Sponsor-involved statistical analyses in Phase III cancer clinical trials.

Int J Cancer 2020 Dec 9;147(12):3579-3581. Epub 2020 Jul 9.

The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

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December 2020

aPCoA: covariate adjusted principal coordinates analysis.

Bioinformatics 2020 07;36(13):4099-4101

Department of Genomic Medicine, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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July 2020

NExUS: Bayesian simultaneous network estimation across unequal sample sizes.

Bioinformatics 2020 02;36(3):798-804

Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA.

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February 2020

Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes.

Cell 2019 08;178(4):795-806.e12

Department of Clinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Gastrointestinal Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Clinical Cancer Genetics Program, The University of Texas MD Anderson Cancer Center, Houston, TX, USA. Electronic address:

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August 2019

Investigating protein patterns in human leukemia cell line experiments: A Bayesian approach for extremely small sample sizes.

Stat Methods Med Res 2020 04 7;29(4):1181-1196. Epub 2019 Jun 7.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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April 2020

Demographic, clinical, and geographical factors associated with lack of receipt of physician recommended chemotherapy in women with breast cancer in Texas.

Cancer Causes Control 2019 Apr 13;30(4):409-415. Epub 2019 Mar 13.

Department of Clinical Cancer Prevention, The University of Texas at MD Anderson Cancer Center, Houston, TX, USA.

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April 2019

Whole Genome-Derived Tiled Peptide Arrays Detect Prediagnostic Autoantibody Signatures in Non-Small-Cell Lung Cancer.

Cancer Res 2019 04 5;79(7):1549-1557. Epub 2019 Feb 5.

Red and Charline McCombs Institute for the Early Detection and Treatment of Cancer, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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April 2019

Personalized Integrated Network Modeling of the Cancer Proteome Atlas.

Sci Rep 2018 10 8;8(1):14924. Epub 2018 Oct 8.

Department of Biostatistics, University of Michigan, Ann Arbor, MI, 48109, USA.

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October 2018

ST8SIA1 Regulates Tumor Growth and Metastasis in TNBC by Activating the FAK-AKT-mTOR Signaling Pathway.

Mol Cancer Ther 2018 12 20;17(12):2689-2701. Epub 2018 Sep 20.

Section of Molecular Hematology and Therapy, Department of Leukemia, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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December 2018

Bayesian inference of hub nodes across multiple networks.

Biometrics 2019 03 23;75(1):172-182. Epub 2018 Aug 23.

Department of Biostatistics, University of Texas MD Anderson Cancer Center, Houston, Texas, U.S.A.

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March 2019

iDINGO-integrative differential network analysis in genomics with Shiny application.

Bioinformatics 2018 04;34(7):1243-1245

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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April 2018

A Bayesian screening approach for hepatocellular carcinoma using multiple longitudinal biomarkers.

Biometrics 2018 03 8;74(1):249-259. Epub 2017 May 8.

Department of Biostatistics, University of Texas MD Anderson Cancer Center, Houston, Texas, U.S.A.

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March 2018

Cytoplasmic Cyclin E Predicts Recurrence in Patients with Breast Cancer.

Clin Cancer Res 2017 Jun 23;23(12):2991-3002. Epub 2016 Nov 23.

Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

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June 2017

SIFORM: shared informative factor models for integration of multi-platform bioinformatic data.

Bioinformatics 2016 11 5;32(21):3279-3290. Epub 2016 Jul 5.

Department of Biostatistics, the University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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November 2016

A Bayesian integrative approach for multi-platform genomic data: A kidney cancer case study.

Biometrics 2017 06 26;73(2):615-624. Epub 2016 Sep 26.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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June 2017

Idelalisib Impacts Cell Growth through Inhibiting Translation-Regulatory Mechanisms in Mantle Cell Lymphoma.

Clin Cancer Res 2017 Jan 24;23(1):181-192. Epub 2016 Jun 24.

Department of Experimental Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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January 2017

Redirecting T-Cell Specificity to EGFR Using mRNA to Self-limit Expression of Chimeric Antigen Receptor.

J Immunother 2016 06;39(5):205-17

*Division of Pediatrics Departments of ‡Biostatistics ∥Neurosurgery §Stem Cell Transplantation and Cellular Therapy, The University of Texas MD Anderson Cancer Center †The University of Texas Graduate School of Biomedical Sciences at Houston, Houston, TX.

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June 2016

Unbiased estimation of biomarker panel performance when combining training and testing data in a group sequential design.

Biometrics 2016 09 4;72(3):888-96. Epub 2016 Feb 4.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston Texas 77030, U.S.A.

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September 2016

Ability to Generate Patient-Derived Breast Cancer Xenografts Is Enhanced in Chemoresistant Disease and Predicts Poor Patient Outcomes.

PLoS One 2015 1;10(9):e0136851. Epub 2015 Sep 1.

Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, United States of America; Department of Investigational Cancer Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX, United States of America.

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May 2016

Improved Detection of Hepatocellular Carcinoma by Using a Longitudinal Alpha-Fetoprotein Screening Algorithm.

Clin Gastroenterol Hepatol 2016 Mar 7;14(3):469-475.e2. Epub 2015 Aug 7.

Department of Biostatistics, University of Texas MD Anderson Cancer Center, Houston, Texas.

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March 2016

DINGO: differential network analysis in genomics.

Bioinformatics 2015 Nov 6;31(21):3413-20. Epub 2015 Jul 6.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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November 2015

PRUNE2 is a human prostate cancer suppressor regulated by the intronic long noncoding RNA PCA3.

Proc Natl Acad Sci U S A 2015 Jul 15;112(27):8403-8. Epub 2015 Jun 15.

David H. Koch Center for Applied Research of Genitourinary Cancers, The University of Texas M.D. Anderson Cancer Center, Houston, TX 77030; University of New Mexico Cancer Center, University of New Mexico School of Medicine, Albuquerque, NM 87131; Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM 87131; Department of Genitourinary Medical Oncology, The University of Texas M.D. Anderson Cancer Center, Houston, TX 77030; Division of Hematology/Oncology, University of New Mexico School of Medicine, Albuquerque, NM 87131;

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July 2015

Epithelial to mesenchymal transition is associated with rapamycin resistance.

Oncotarget 2015 Aug;6(23):19500-13

Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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August 2015

Phase I study of the anti-IGF1R antibody cixutumumab with everolimus and octreotide in advanced well-differentiated neuroendocrine tumors.

Endocr Relat Cancer 2015 Jun 21;22(3):431-41. Epub 2015 Apr 21.

Department of Gastrointestinal Medical OncologyThe University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Street, Unit 426, Houston, Texas 77030, USANational Cancer InstituteRockville, Maryland, USA

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June 2015

Prognostic gene signature identification using causal structure learning: applications in kidney cancer.

Cancer Inform 2015 27;14(Suppl 1):23-35. Epub 2015 Jan 27.

Department of Biostatistics, The University of Texas, MD Anderson Cancer Center, Houston, TX, USA.

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April 2015

Predictive classification of correlated targets with application to detection of metastatic cancer using functional CT imaging.

Biometrics 2015 Sep 7;71(3):792-802. Epub 2015 Apr 7.

Department of Biostatistics, University of Texas M.D. Anderson Cancer Center, Houston, Texas, U.S.A.

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September 2015

Bayesian hierarchical structured variable selection methods with application to MIP studies in breast cancer.

J R Stat Soc Ser C Appl Stat 2014 Aug;63(4):595-620

Department of Biostatistics, The University of Texas M.D. Anderson Cancer Center, Houston, Texas, U.S.A.

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August 2014

SU2C phase Ib study of paclitaxel and MK-2206 in advanced solid tumors and metastatic breast cancer.

J Natl Cancer Inst 2015 Mar 16;107(3). Epub 2015 Feb 16.

Departments of Breast Medical Oncology (AMGA, SL, SMT), Systems Biology (AMGA, GBM), Biostatistics (HC, YL, K-AD), Experimental Therapeutics (KSC), Investigational Cancer Therapeutics (AA, ET, SPP, VV-B, FMB), Pathology (AAS) and Surgical Oncology (FMB), The University of Texas MD Anderson Cancer Center, Houston, TX; Division of Hematology-Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA (IK, EPW); Division of Hematology-Oncology, University of California, San Diego, CA (RK); Cancer Therapy Evaluation Program, NIH/National Cancer Institute, Rockville, MD (LAD).

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March 2015

Discovery and horizontal follow-up of an autoantibody signature in human prostate cancer.

Proc Natl Acad Sci U S A 2015 Feb 9;112(8):2515-20. Epub 2015 Feb 9.

University of New Mexico Cancer Center and Divisions of Hematology and Medical Oncology, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM 87131

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February 2015

miRNA-target gene regulatory networks: A Bayesian integrative approach to biomarker selection with application to kidney cancer.

Biometrics 2015 Jun 30;71(2):428-38. Epub 2015 Jan 30.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, 1400 Pressler Street, Unit 1411, Texas, 77030-3722, U.S.A.

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June 2015

Bayesian graphical network analyses reveal complex biological interactions specific to Alzheimer's disease.

J Alzheimers Dis 2015 ;44(3):917-25

CSIRO Digital Productivity and Services/Australian e-Health Research Centre, Royal Brisbane and Women's Hospital, Brisbane, QLD, Australia Cooperative Research Centre for Mental Health, Parkville, VIC, Australia.

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October 2015

Diet modification and metformin have a beneficial effect in a fly model of obesity and mucormycosis.

PLoS One 2014 30;9(9):e108635. Epub 2014 Sep 30.

Department of Infectious Diseases, Infection Control and Employee Health, The University of Texas M.D. Anderson Cancer Center, Houston, Texas, United States of America.

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June 2015

Catalytic mTOR inhibitors can overcome intrinsic and acquired resistance to allosteric mTOR inhibitors.

Oncotarget 2014 Sep;5(18):8544-57

Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX. Department of Investigational Cancer Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX.

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September 2014

Association between germline single nucleotide polymorphisms in the PI3K-AKT-mTOR pathway, obesity, and breast cancer disease-free survival.

Breast Cancer Res Treat 2014 Sep 10;147(2):381-7. Epub 2014 Aug 10.

Department of Gastroenterology - Research, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.

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September 2014

How to get the most from microarray data: advice from reverse genomics.

BMC Genomics 2014 Mar 21;15:223. Epub 2014 Mar 21.

Department of Genitourinary Medical Oncology, Unit 1374, The University of Texas MD Anderson Cancer Center, 1155 Pressler Street, Houston, TX 77030-3721, USA.

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March 2014

Differences in gene and protein expression and the effects of race/ethnicity on breast cancer subtypes.

Cancer Epidemiol Biomarkers Prev 2014 Feb 2;23(2):316-23. Epub 2013 Dec 2.

Authors' Affiliations: Departments of Breast Medical Oncology, Biostatistics, Pathology, Systems Biology, and Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas; and Division of Hematology-Oncology, Yale University, New Haven, Connecticut.

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February 2014

Semiparametric Bayesian inference for phage display data.

Biometrics 2013 Mar 22;69(1):174-83. Epub 2013 Jan 22.

Department of Mathematics, University of Louisiana at Lafayette, Lafayette, Louisiana 70504-1010, USA.

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March 2013

Model averaging strategies for structure learning in Bayesian networks with limited data.

BMC Bioinformatics 2012 24;13 Suppl 13:S10. Epub 2012 Aug 24.

Department of Bioinformatics and Computational Biology, UT MD Anderson Cancer Center, Houston, Texas 77030, USA.

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May 2013

Bayesian decision theoretic multiple comparison procedures: an application to phage display data.

Biom J 2013 May 20;55(3):478-89. Epub 2012 Dec 20.

Department of Mathematics, University of Louisiana at Lafayette, LA 70504-1010, USA.

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May 2013

High stearoyl-CoA desaturase 1 expression is associated with shorter survival in breast cancer patients.

Breast Cancer Res Treat 2013 Jan 4;137(1):319-27. Epub 2012 Dec 4.

Department of Surgical Oncology, Unit 1484, The University of Texas MD Anderson Cancer Center, 1400 Pressler Street, Houston, TX 77030, USA.

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January 2013

Genetic variants in the vitamin D pathway and breast cancer disease-free survival.

Carcinogenesis 2013 Mar 24;34(3):587-94. Epub 2012 Nov 24.

Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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March 2013

iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data.

Bioinformatics 2013 Jan 9;29(2):149-59. Epub 2012 Nov 9.

Department of Biostatistics, The University of Texas, MD Anderson Cancer Center, Houston, TX 77030, USA.

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January 2013

Biomarkers of response to Akt inhibitor MK-2206 in breast cancer.

Clin Cancer Res 2012 Oct 29;18(20):5816-28. Epub 2012 Aug 29.

Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030-4009, USA.

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October 2012

Gene expression, molecular class changes, and pathway analysis after neoadjuvant systemic therapy for breast cancer.

Clin Cancer Res 2012 Feb 10;18(4):1109-19. Epub 2012 Jan 10.

Departments of Breast Medical Oncology, Systems Biology, Biostatistics, Surgical Oncology, and Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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February 2012

Bagged gene shaving for the robust clustering of high-throughput data.

Int J Bioinform Res Appl 2010 ;6(4):326-43

Department of Bioinformatics and Computational Biology, UT MD Anderson Cancer Center, Houston, Texas 77030, USA.

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April 2011

Rapamycin regulates stearoyl CoA desaturase 1 expression in breast cancer.

Mol Cancer Ther 2010 Oct 28;9(10):2770-84. Epub 2010 Sep 28.

Department of Surgical Oncology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas, USA.

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October 2010

Building networks with microarray data.

Methods Mol Biol 2010 ;620:315-43

Department of Bioinformatics and Computational Biology, University of Texas M. D. Anderson Cancer Center, Houston, TX, USA.

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November 2010

Quantification of mineralized bone response to prostate cancer by noninvasive in vivo microCT and non-destructive ex vivo microCT and DXA in a mouse model.

PLoS One 2010 Mar 29;5(3):e9854. Epub 2010 Mar 29.

Department of Experimental Diagnostic Imaging, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.

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March 2010

A Bayesian semiparametric survival model with longitudinal markers.

Biometrics 2010 Jun 8;66(2):435-43. Epub 2009 Jun 8.

Department of Clinical Sciences, Division of Biostatistics, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.

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June 2010

Extracellular and intracellular mechanisms that mediate the metastatic activity of exogenous osteopontin.

Cancer 2009 Apr;115(8):1753-64

Department of Genitourinary Medical Oncology, The University of Texas M. D. Anderson Cancer Center, Houston, Texas, USA.

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April 2009

Association and interactions between DNA repair gene polymorphisms and adult glioma.

Cancer Epidemiol Biomarkers Prev 2009 Jan;18(1):204-14

Department of Epidemiology, The University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA.

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January 2009

Polymorphisms in genes involved in neurodevelopment may be associated with altered brain morphology in schizophrenia: preliminary evidence.

Psychiatry Res 2009 Jan 2;165(1-2):1-9. Epub 2008 Dec 2.

Laboratório de Neurociências (LIM-27), Departmento e Instituto de Psiquiatria, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil.

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January 2009

Phase III trial of androgen ablation with or without three cycles of systemic chemotherapy for advanced prostate cancer.

J Clin Oncol 2008 Dec 24;26(36):5936-42. Epub 2008 Nov 24.

Department of Genitourinary Medical Oncology, University of Texas MD Anderson Cancer Center, 1155 Pressler, CPB7.3462, Houston, TX 77030, USA.

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December 2008

Soluble ErbB3 levels in bone marrow and plasma of men with prostate cancer.

Clin Cancer Res 2008 Jun;14(12):3729-36

Department of Molecular Pathology, The University of Texas M. D. Anderson Cancer Center, Houston, TX 77030, USA.

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June 2008