Kim-Anh Do

Kim-Anh Do

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Kim-Anh Do

Publications by authors named "Kim-Anh Do"

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Transcriptomic analysis implicates necroptosis in disease progression and prognosis in myelodysplastic syndromes.

Authors:
Guillermo Montalban-Bravo Caleb A Class Irene Ganan-Gomez Rashmi Kanagal-Shamanna Koji Sasaki Guillaume Richard-Carpentier Kiran Naqvi Yue Wei Hui Yang Kelly A Soltysiak Kelly Chien Carlos Bueso-Ramos Kim-Anh Do Hagop Kantarjian Guillermo Garcia-Manero

Leukemia 2019 Nov 12. Epub 2019 Nov 12.

Department of Leukemia, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1038/s41375-019-0623-5DOI Listing
November 2019

Association between plasma diacetylspermine and tumor spermine synthase with outcome in triple negative breast cancer.

Authors:
Johannes F Fahrmann Jody Vykoukal Alia Fleury Satyendra Tripathi Jennifer B Dennison Eunice Murage Peng Wang Chuan-Yih Yu Michela Capello Chad J Creighton Kim-Anh Do James P Long Ehsan Irajizad Christine Peterson Hiroyuki Katayama Mary L Disis Banu Arun Samir Hanash

J Natl Cancer Inst 2019 Sep 10. Epub 2019 Sep 10.

Departments of Clinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd., Houston, TX, USA.

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https://academic.oup.com/jnci/advance-article/doi/10.1093/jn
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http://dx.doi.org/10.1093/jnci/djz182DOI Listing
September 2019

Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes.

Authors:
Erick Riquelme Yu Zhang Liangliang Zhang Maria Montiel Michelle Zoltan Wenli Dong Pompeyo Quesada Ismet Sahin Vidhi Chandra Anthony San Lucas Paul Scheet Hanwen Xu Samir M Hanash Lei Feng Jared K Burks Kim-Anh Do Christine B Peterson Deborah Nejman Ching-Wei D Tzeng Michael P Kim Cynthia L Sears Nadim Ajami Joseph Petrosino Laura D Wood Anirban Maitra Ravid Straussman Matthew Katz James Robert White Robert Jenq Jennifer Wargo Florencia McAllister

Cell 2019 Aug;178(4):795-806.e12

Department of Clinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Gastrointestinal Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Clinical Cancer Genetics Program, The University of Texas MD Anderson Cancer Center, Houston, TX, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.07.008DOI Listing
August 2019

Cytoplasmic Cyclin E Expression Predicts for Response to Neoadjuvant Chemotherapy in Breast Cancer.

Authors:
Cansu Karakas Ashleigh M Francis Min Jin Ha Hannah F Wingate Richard A Meena Min Yi Komal S Rasaputra Angelica M Gutierrez Barrera Banu Arun Kim-Anh Do Aysegul Sahin Khandan Keyomarsi Kelly K Hunt

Ann Surg 2019 Aug 20. Epub 2019 Aug 20.

Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX.

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http://dx.doi.org/10.1097/SLA.0000000000003551DOI Listing
August 2019

Gut Microbiome Signatures are Predictive of Infectious Risk Following Induction Therapy for Acute Myeloid Leukemia.

Authors:
Jessica R Galloway-Peña Yushu Shi Christine B Peterson Pranoti Sahasrabhojane Vancheswaran Gopalakrishnan Chelcy E Brumlow Naval G Daver Mansour Alfayez Prajwal C Boddu Md Abdul Wadud Khan Jennifer A Wargo Kim-Anh Do Robert R Jenq Dimitrios P Kontoyiannis Samuel A Shelburne

Clin Infect Dis 2019 Aug 22. Epub 2019 Aug 22.

Departments of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston TX.

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https://academic.oup.com/cid/advance-article/doi/10.1093/cid
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http://dx.doi.org/10.1093/cid/ciz777DOI Listing
August 2019

NExUS: Bayesian simultaneous network estimation across unequal sample sizes.

Authors:
Priyam Das Christine B Peterson Kim-Anh Do Rehan Akbani Veerabhadran Baladandayuthapani

Bioinformatics 2019 Aug 28. Epub 2019 Aug 28.

Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz636DOI Listing
August 2019

Phase II trial of AKT inhibitor MK-2206 in patients with advanced breast cancer who have tumors with PIK3CA or AKT mutations, and/or PTEN loss/PTEN mutation.

Authors:
Yan Xing Nancy U Lin Matthew A Maurer Huiqin Chen Armeen Mahvash Aysegul Sahin Argun Akcakanat Yisheng Li Vandana Abramson Jennifer Litton Mariana Chavez-MacGregor Vicente Valero Sarina A Piha-Paul David Hong Kim-Anh Do Emily Tarco Dianna Riall Agda Karina Eterovic Gerburg M Wulf Lewis C Cantley Gordon B Mills L Austin Doyle Eric Winer Gabriel N Hortobagyi Ana Maria Gonzalez-Angulo Funda Meric-Bernstam

Breast Cancer Res 2019 07 5;21(1):78. Epub 2019 Jul 5.

Investigational Cancer Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13058-019-1154-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6612080PMC
July 2019

Investigating protein patterns in human leukemia cell line experiments: A Bayesian approach for extremely small sample sizes.

Authors:
Thierry Chekouo Francesco C Stingo Caleb A Class Yuanqing Yan Zachary Bohannan Yue Wei Guillermo Garcia-Manero Samir Hanash Kim-Anh Do

Stat Methods Med Res 2019 Jun 7:962280219852721. Epub 2019 Jun 7.

3 Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://journals.sagepub.com/doi/10.1177/0962280219852721
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http://dx.doi.org/10.1177/0962280219852721DOI Listing
June 2019

Safety and preliminary efficacy of orally administered lyophilized fecal microbiota product compared with frozen product given by enema for recurrent Clostridium difficile infection: A randomized clinical trial.

Authors:
Zhi-Dong Jiang Robert R Jenq Nadim J Ajami Joseph F Petrosino Ashley A Alexander Shi Ke Tehseen Iqbal Andrew W DuPont Kenneth Muldrew Yushu Shi Christine Peterson Kim-Anh Do Herbert L DuPont

PLoS One 2018 2;13(11):e0205064. Epub 2018 Nov 2.

University of Texas School of Public Health, Houston, TX, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0205064PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6214502PMC
April 2019

Whole Genome-Derived Tiled Peptide Arrays Detect Prediagnostic Autoantibody Signatures in Non-Small-Cell Lung Cancer.

Authors:
Yuanqing Yan Nan Sun Hong Wang Makoto Kobayashi Jon J Ladd James P Long Ken C Lo Jigar Patel Eric Sullivan Thomas Albert Gary E Goodman Kim-Anh Do Samir M Hanash

Cancer Res 2019 Apr 5;79(7):1549-1557. Epub 2019 Feb 5.

Red and Charline McCombs Institute for the Early Detection and Treatment of Cancer, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1158/0008-5472.CAN-18-1536DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6445725PMC
April 2019

Demographic, clinical, and geographical factors associated with lack of receipt of physician recommended chemotherapy in women with breast cancer in Texas.

Authors:
Parijatham S Thomas Caleb A Class Tanmay R Gandhi Arvind Bambhroliya Kim-Anh Do Abenaa M Brewster

Cancer Causes Control 2019 Apr 13;30(4):409-415. Epub 2019 Mar 13.

Department of Clinical Cancer Prevention, The University of Texas at MD Anderson Cancer Center, Houston, TX, USA.

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http://link.springer.com/10.1007/s10552-019-01151-9
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http://dx.doi.org/10.1007/s10552-019-01151-9DOI Listing
April 2019

Bayesian inference of hub nodes across multiple networks.

Authors:
Junghi Kim Kim-Anh Do Min Jin Ha Christine B Peterson

Biometrics 2019 03 23;75(1):172-182. Epub 2018 Aug 23.

Department of Biostatistics, University of Texas MD Anderson Cancer Center, Houston, Texas, U.S.A.

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http://dx.doi.org/10.1111/biom.12958DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393214PMC
March 2019

WISP1 is associated to advanced disease, EMT and an inflamed tumor microenvironment in multiple solid tumors.

Authors:
Pierre-Olivier Gaudreau Sylvie Clairefond Caleb A Class Pierre-Luc Boulay Pavel Chrobak Bertrand Allard Feryel Azzi Sandra Pommey Kim-Anh Do Fred Saad Dominique Trudel Marian Young John Stagg

Oncoimmunology 2019 22;8(5):e1581545. Epub 2019 Mar 22.

Faculté de Pharmacie, Université de Montréal et Institut du Cancer de Montréal / CRCHUM, Axe Cancer, Montreal, QC, Canada.

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https://www.tandfonline.com/doi/full/10.1080/2162402X.2019.1
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http://dx.doi.org/10.1080/2162402X.2019.1581545DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6492985PMC
March 2019

Cooperative Effect of Oncogenic and in an HGF-Dominant Environment in Breast Cancer.

Authors:
Shuying Liu Shunqiang Li Bailiang Wang Wenbin Liu Mihai Gagea Huiqin Chen Joohyuk Sohn Napa Parinyanitikul Tina Primeau Kim-Anh Do George F Vande Woude John Mendelsohn Naoto T Ueno Gordon B Mills Debu Tripathy Ana M Gonzalez-Angulo

Mol Cancer Ther 2019 02 5;18(2):399-412. Epub 2018 Dec 5.

Department of Breast Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1158/1535-7163.MCT-18-0710DOI Listing
February 2019

ST8SIA1 Regulates Tumor Growth and Metastasis in TNBC by Activating the FAK-AKT-mTOR Signaling Pathway.

Authors:
Khoa Nguyen Yuanqing Yan Bin Yuan Abhishek Dasgupta Jeffrey Sun Hong Mu Kim-Anh Do Naoto T Ueno Michael Andreeff V Lokesh Battula

Mol Cancer Ther 2018 12 20;17(12):2689-2701. Epub 2018 Sep 20.

Section of Molecular Hematology and Therapy, Department of Leukemia, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1158/1535-7163.MCT-18-0399DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6279518PMC
December 2018

KDM6B overexpression activates innate immune signaling and impairs hematopoiesis in mice.

Authors:
Yue Wei Hong Zheng Naran Bao Shan Jiang Carlos E Bueso-Ramos Joseph Khoury Caleb Class Yue Lu Kevin Lin Hui Yang Irene Ganan-Gomez Daniel T Starczynowski Kim-Anh Do Simona Colla Guillermo Garcia-Manero

Blood Adv 2018 10;2(19):2491-2504

Department of Leukemia.

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http://dx.doi.org/10.1182/bloodadvances.2018024166DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6177657PMC
October 2018

Personalized Integrated Network Modeling of the Cancer Proteome Atlas.

Authors:
Min Jin Ha Sayantan Banerjee Rehan Akbani Han Liang Gordon B Mills Kim-Anh Do Veerabhadran Baladandayuthapani

Sci Rep 2018 10 8;8(1):14924. Epub 2018 Oct 8.

Department of Biostatistics, University of Michigan, Ann Arbor, MI, 48109, USA.

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http://www.nature.com/articles/s41598-018-32682-x
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http://dx.doi.org/10.1038/s41598-018-32682-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6175854PMC
October 2018

A System-Level Approach to Improve the Uptake of Antiestrogen Preventive Therapy among Women with Atypical Hyperplasia and Lobular Cancer .

Authors:
Abenaa M Brewster Priya Thomas Powel Brown Robin Coyne Yuanqing Yan Cristina Checka Lavinia Middleton Kim-Anh Do Therese Bevers

Cancer Prev Res (Phila) 2018 05 4;11(5):295-302. Epub 2018 Apr 4.

Department of Clinical Cancer Prevention, MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1158/1940-6207.CAPR-17-0314DOI Listing
May 2018

iDINGO-integrative differential network analysis in genomics with Shiny application.

Authors:
Caleb A Class Min Jin Ha Veerabhadran Baladandayuthapani Kim-Anh Do

Bioinformatics 2018 04;34(7):1243-1245

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/bioinformatics/btx750DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030922PMC
April 2018

Clinical implications of cancer gene mutations in patients with chronic lymphocytic leukemia treated with lenalidomide.

Authors:
Koichi Takahashi Boyu Hu Feng Wang Yuanqing Yan Ekaterina Kim Candida Vitale Keyur P Patel Paolo Strati Curtis Gumbs Latasha Little Samantha Tippen Xingzhi Song Jianhua Zhang Nitin Jain Philip Thompson Guillermo Garcia-Manero Hagop Kantarjian Zeev Estrov Kim-Anh Do Michael Keating Jan A Burger William G Wierda P Andrew Futreal Alessandra Ferrajoli

Blood 2018 04 22;131(16):1820-1832. Epub 2018 Jan 22.

Department of Leukemia and.

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http://dx.doi.org/10.1182/blood-2017-11-817296DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5909764PMC
April 2018

A Bayesian screening approach for hepatocellular carcinoma using multiple longitudinal biomarkers.

Authors:
Nabihah Tayob Francesco Stingo Kim-Anh Do Anna S F Lok Ziding Feng

Biometrics 2018 03 8;74(1):249-259. Epub 2017 May 8.

Department of Biostatistics, University of Texas MD Anderson Cancer Center, Houston, Texas, U.S.A.

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http://dx.doi.org/10.1111/biom.12717DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5677596PMC
March 2018

A Bayesian integrative approach for multi-platform genomic data: A kidney cancer case study.

Authors:
Thierry Chekouo Francesco C Stingo James D Doecke Kim-Anh Do

Biometrics 2017 06 26;73(2):615-624. Epub 2016 Sep 26.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1111/biom.12587DOI Listing
June 2017

Cytoplasmic Cyclin E Predicts Recurrence in Patients with Breast Cancer.

Authors:
Kelly K Hunt Cansu Karakas Min Jin Ha Anna Biernacka Min Yi Aysegul A Sahin Opoku Adjapong Gabriel N Hortobagyi Melissa Bondy Patricia Thompson Kwok Leung Cheung Ian O Ellis Sarah Bacus W Fraser Symmans Kim-Anh Do Khandan Keyomarsi

Clin Cancer Res 2017 Jun 23;23(12):2991-3002. Epub 2016 Nov 23.

Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-16-2217DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5441976PMC
June 2017

Role of CPS1 in Cell Growth, Metabolism and Prognosis in LKB1-Inactivated Lung Adenocarcinoma.

Authors:
Müge Çeliktas Ichidai Tanaka Satyendra Chandra Tripathi Johannes F Fahrmann Clemente Aguilar-Bonavides Pamela Villalobos Oliver Delgado Dilsher Dhillon Jennifer B Dennison Edwin J Ostrin Hong Wang Carmen Behrens Kim-Anh Do Adi F Gazdar Samir M Hanash Ayumu Taguchi

J Natl Cancer Inst 2017 03;109(3):1-9

Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1093/jnci/djw231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5198847PMC
March 2017

Idelalisib Impacts Cell Growth through Inhibiting Translation-Regulatory Mechanisms in Mantle Cell Lymphoma.

Authors:
Qingshan Yang Lisa S Chen Min Jin Ha Kim-Anh Do Sattva S Neelapu Varsha Gandhi

Clin Cancer Res 2017 Jan 24;23(1):181-192. Epub 2016 Jun 24.

Department of Experimental Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1158/1078-0432.CCR-15-3135DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5433851PMC
January 2017

SIFORM: shared informative factor models for integration of multi-platform bioinformatic data.

Authors:
Xuebei An Jianhua Hu Kim-Anh Do

Bioinformatics 2016 11 5;32(21):3279-3290. Epub 2016 Jul 5.

Department of Biostatistics, the University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btw295DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6169488PMC
November 2016

Unbiased estimation of biomarker panel performance when combining training and testing data in a group sequential design.

Authors:
Nabihah Tayob Kim-Anh Do Ziding Feng

Biometrics 2016 09 4;72(3):888-96. Epub 2016 Feb 4.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston Texas 77030, U.S.A.

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http://dx.doi.org/10.1111/biom.12480DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4974170PMC
September 2016

Phase I trials using Sleeping Beauty to generate CD19-specific CAR T cells.

Authors:
Partow Kebriaei Harjeet Singh M Helen Huls Matthew J Figliola Roland Bassett Simon Olivares Bipulendu Jena Margaret J Dawson Pappanaicken R Kumaresan Shihuang Su Sourindra Maiti Jianliang Dai Branden Moriarity Marie-Andrée Forget Vladimir Senyukov Aaron Orozco Tingting Liu Jessica McCarty Rineka N Jackson Judy S Moyes Gabriela Rondon Muzaffar Qazilbash Stefan Ciurea Amin Alousi Yago Nieto Katy Rezvani David Marin Uday Popat Chitra Hosing Elizabeth J Shpall Hagop Kantarjian Michael Keating William Wierda Kim Anh Do David A Largaespada Dean A Lee Perry B Hackett Richard E Champlin Laurence J N Cooper

J Clin Invest 2016 09 2;126(9):3363-76. Epub 2016 Aug 2.

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http://dx.doi.org/10.1172/JCI86721DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5004935PMC
September 2016

Correction: Ability to Generate Patient-Derived Breast Cancer Xenografts Is Enhanced in Chemoresistant Disease and Predicts Poor Patient Outcomes.

Authors:
Priscilla F McAuliffe Kurt W Evans Argun Akcakanat Ken Chen Xiaofeng Zheng Hao Zhao Agda Karina Eterovic Takafumi Sangai Ashley M Holder Chandeshwar Sharma Huiqin Chen Kim-Anh Do Emily Tarco Mihai Gagea Katherine A Naff Aysegul Sahin Asha S Multani Dalliah M Black Elizabeth A Mittendorf Isabelle Bedrosian Gordon B Mills Ana Maria Gonzalez-Angulo Funda Meric-Bernstam

PLoS One 2016 8;11(3):e0151121. Epub 2016 Mar 8.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0151121PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4782992PMC
July 2016

Redirecting T-Cell Specificity to EGFR Using mRNA to Self-limit Expression of Chimeric Antigen Receptor.

Authors:
Hillary G Caruso Hiroki Torikai Ling Zhang Sourindra Maiti Jianliang Dai Kim-Anh Do Harjeet Singh Helen Huls Dean A Lee Richard E Champlin Amy B Heimberger Laurence J N Cooper

J Immunother 2016 06;39(5):205-17

*Division of Pediatrics Departments of ‡Biostatistics ∥Neurosurgery §Stem Cell Transplantation and Cellular Therapy, The University of Texas MD Anderson Cancer Center †The University of Texas Graduate School of Biomedical Sciences at Houston, Houston, TX.

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http://dx.doi.org/10.1097/CJI.0000000000000126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5847343PMC
June 2016

Ability to Generate Patient-Derived Breast Cancer Xenografts Is Enhanced in Chemoresistant Disease and Predicts Poor Patient Outcomes.

Authors:
Priscilla F McAuliffe Kurt W Evans Argun Akcakanat Ken Chen Xiaofeng Zheng Hao Zhao Agda Karina Eterovic Takafumi Sangai Ashley M Holder Chandeshwar Sharma Huiqin Chen Kim-Anh Do Emily Tarco Mihai Gagea Katherine A Naff Aysegul Sahin Asha S Multani Dalliah M Black Elizabeth A Mittendorf Isabelle Bedrosian Gordon B Mills Ana Maria Gonzalez-Angulo Funda Meric-Bernstam

PLoS One 2015 1;10(9):e0136851. Epub 2015 Sep 1.

Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, United States of America; Department of Investigational Cancer Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0136851PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4556673PMC
May 2016

Tissue Effects in a Randomized Controlled Trial of Short-term Finasteride in Early Prostate Cancer.

Authors:
Jeri Kim John W Davis Eric A Klein Cristina Magi-Galluzzi Yair Lotan John F Ward Louis L Pisters Joseph W Basler Curtis A Pettaway Andrew Stephenson Elsa M Li Ning Tapia Eleni Efstathiou Xuemei Wang Kim-Anh Do J Jack Lee Ivan P Gorlov Lana A Vornik Ashraful M Hoque Ina N Prokhorova Howard L Parnes Scott M Lippman Ian M Thompson Powel H Brown Christopher J Logothetis Patricia Troncoso

EBioMedicine 2016 May 7;7:85-93. Epub 2016 Apr 7.

Department of Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1016/j.ebiom.2016.03.047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909608PMC
May 2016

Improved Detection of Hepatocellular Carcinoma by Using a Longitudinal Alpha-Fetoprotein Screening Algorithm.

Authors:
Nabihah Tayob Anna S F Lok Kim-Anh Do Ziding Feng

Clin Gastroenterol Hepatol 2016 Mar 7;14(3):469-475.e2. Epub 2015 Aug 7.

Department of Biostatistics, University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1016/j.cgh.2015.07.049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4744807PMC
March 2016

p53 deficiency linked to B cell translocation gene 2 (BTG2) loss enhances metastatic potential by promoting tumor growth in primary and metastatic sites in patient-derived xenograft (PDX) models of triple-negative breast cancer.

Authors:
Emily Powell Jiansu Shao Yuan Yuan Hsiang-Chun Chen Shirong Cai Gloria V Echeverria Nipun Mistry Keith F Decker Christopher Schlosberg Kim-Anh Do John R Edwards Han Liang David Piwnica-Worms Helen Piwnica-Worms

Breast Cancer Res 2016 Jan 27;18(1):13. Epub 2016 Jan 27.

Department of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13058-016-0673-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4728775PMC
January 2016

DINGO: differential network analysis in genomics.

Authors:
Min Jin Ha Veerabhadran Baladandayuthapani Kim-Anh Do

Bioinformatics 2015 Nov 6;31(21):3413-20. Epub 2015 Jul 6.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/bioinformatics/btv406DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4751246PMC
November 2015

Bayesian graphical network analyses reveal complex biological interactions specific to Alzheimer's disease.

Authors:
Alan Rembach Francesco C Stingo Christine Peterson Marina Vannucci Kim-Anh Do William J Wilson S Lance Macaulay Timothy M Ryan Ralph N Martins David Ames Colin L Masters James D Doecke

J Alzheimers Dis 2015 ;44(3):917-25

CSIRO Digital Productivity and Services/Australian e-Health Research Centre, Royal Brisbane and Women's Hospital, Brisbane, QLD, Australia Cooperative Research Centre for Mental Health, Parkville, VIC, Australia.

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http://dx.doi.org/10.3233/JAD-141497DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499459PMC
October 2015

Predictive classification of correlated targets with application to detection of metastatic cancer using functional CT imaging.

Authors:
Yuan Wang Brian P Hobbs Jianhua Hu Chaan S Ng Kim-Anh Do

Biometrics 2015 Sep 7;71(3):792-802. Epub 2015 Apr 7.

Department of Biostatistics, University of Texas M.D. Anderson Cancer Center, Houston, Texas, U.S.A.

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http://dx.doi.org/10.1111/biom.12304DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4575264PMC
September 2015

Epithelial to mesenchymal transition is associated with rapamycin resistance.

Authors:
Ashley M Holder Argun Akcakanat Farrell Adkins Kurt Evans Huiqin Chen Caimiao Wei Denai R Milton Yisheng Li Kim-Anh Do Filip Janku Funda Meric-Bernstam

Oncotarget 2015 Aug;6(23):19500-13

Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4637301PMC
http://dx.doi.org/10.18632/oncotarget.3669DOI Listing
August 2015

Targeting the interleukin-11 receptor α in metastatic prostate cancer: A first-in-man study.

Authors:
Renata Pasqualini Randall E Millikan Dawn R Christianson Marina Cardó-Vila Wouter H P Driessen Ricardo J Giordano Amin Hajitou Anh G Hoang Sijin Wen Kirstin F Barnhart Wallace B Baze Valerie D Marcott David H Hawke Kim-Anh Do Nora M Navone Eleni Efstathiou Patricia Troncoso Roy R Lobb Christopher J Logothetis Wadih Arap

Cancer 2015 Jul 1;121(14):2411-21. Epub 2015 Apr 1.

David H. Koch Center for Applied Research of Genitourinary Cancers, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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July 2015

PRUNE2 is a human prostate cancer suppressor regulated by the intronic long noncoding RNA PCA3.

Authors:
Ahmad Salameh Alessandro K Lee Marina Cardó-Vila Diana N Nunes Eleni Efstathiou Fernanda I Staquicini Andrey S Dobroff Serena Marchiò Nora M Navone Hitomi Hosoya Richard C Lauer Sijin Wen Carolina C Salmeron Anh Hoang Irene Newsham Leandro A Lima Dirce M Carraro Salvatore Oliviero Mikhail G Kolonin Richard L Sidman Kim-Anh Do Patricia Troncoso Christopher J Logothetis Ricardo R Brentani George A Calin Webster K Cavenee Emmanuel Dias-Neto Renata Pasqualini Wadih Arap

Proc Natl Acad Sci U S A 2015 Jul 15;112(27):8403-8. Epub 2015 Jun 15.

David H. Koch Center for Applied Research of Genitourinary Cancers, The University of Texas M.D. Anderson Cancer Center, Houston, TX 77030; University of New Mexico Cancer Center, University of New Mexico School of Medicine, Albuquerque, NM 87131; Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM 87131; Department of Genitourinary Medical Oncology, The University of Texas M.D. Anderson Cancer Center, Houston, TX 77030; Division of Hematology/Oncology, University of New Mexico School of Medicine, Albuquerque, NM 87131;

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http://dx.doi.org/10.1073/pnas.1507882112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4500257PMC
July 2015

Diet modification and metformin have a beneficial effect in a fly model of obesity and mucormycosis.

Authors:
Fazal Shirazi Dimitrios Farmakiotis Yuanqing Yan Nathaniel Albert Kim-Anh Do Do Kim-Anh Dimitrios P Kontoyiannis

PLoS One 2014 30;9(9):e108635. Epub 2014 Sep 30.

Department of Infectious Diseases, Infection Control and Employee Health, The University of Texas M.D. Anderson Cancer Center, Houston, Texas, United States of America.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4182538PMC
June 2015

miRNA-target gene regulatory networks: A Bayesian integrative approach to biomarker selection with application to kidney cancer.

Authors:
Thierry Chekouo Francesco C Stingo James D Doecke Kim-Anh Do

Biometrics 2015 Jun 30;71(2):428-38. Epub 2015 Jan 30.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, 1400 Pressler Street, Unit 1411, Texas, 77030-3722, U.S.A.

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http://dx.doi.org/10.1111/biom.12266DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499566PMC
June 2015

Phase I study of the anti-IGF1R antibody cixutumumab with everolimus and octreotide in advanced well-differentiated neuroendocrine tumors.

Authors:
Arvind Dasari Alexandria Phan Sanjay Gupta Asif Rashid Sai-Ching Jim Yeung Kenneth Hess Helen Chen Emily Tarco Huiqin Chen Caimiao Wei Kim Anh-Do Daniel Halperin Funda Meric-Bernstam James Yao

Endocr Relat Cancer 2015 Jun 21;22(3):431-41. Epub 2015 Apr 21.

Department of Gastrointestinal Medical OncologyThe University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Street, Unit 426, Houston, Texas 77030, USANational Cancer InstituteRockville, Maryland, USA

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http://dx.doi.org/10.1530/ERC-15-0002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4566955PMC
June 2015

Prognostic gene signature identification using causal structure learning: applications in kidney cancer.

Authors:
Min Jin Ha Veerabhadran Baladandayuthapani Kim-Anh Do

Cancer Inform 2015 27;14(Suppl 1):23-35. Epub 2015 Jan 27.

Department of Biostatistics, The University of Texas, MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.4137/CIN.S14873DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4362630PMC
April 2015

SU2C phase Ib study of paclitaxel and MK-2206 in advanced solid tumors and metastatic breast cancer.

Authors:
Ana M Gonzalez-Angulo Ian Krop Argun Akcakanat Huiqin Chen Shuying Liu Yisheng Li Kirk S Culotta Emily Tarco Sarina Piha-Paul Stacy Moulder-Thompson Vivianne Velez-Bravo Aysegul A Sahin Laurence A Doyle Kim-Anh Do Eric P Winer Gordon B Mills Razelle Kurzrock Funda Meric-Bernstam

J Natl Cancer Inst 2015 Mar 16;107(3). Epub 2015 Feb 16.

Departments of Breast Medical Oncology (AMGA, SL, SMT), Systems Biology (AMGA, GBM), Biostatistics (HC, YL, K-AD), Experimental Therapeutics (KSC), Investigational Cancer Therapeutics (AA, ET, SPP, VV-B, FMB), Pathology (AAS) and Surgical Oncology (FMB), The University of Texas MD Anderson Cancer Center, Houston, TX; Division of Hematology-Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA (IK, EPW); Division of Hematology-Oncology, University of California, San Diego, CA (RK); Cancer Therapy Evaluation Program, NIH/National Cancer Institute, Rockville, MD (LAD).

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4342675PMC
March 2015

Discovery and horizontal follow-up of an autoantibody signature in human prostate cancer.

Authors:
Paul J Mintz Anna Cecilia Rietz Marina Cardó-Vila Michael G Ozawa Eleonora Dondossola Kim-Anh Do Jeri Kim Patricia Troncoso Christopher J Logothetis Richard L Sidman Renata Pasqualini Wadih Arap

Proc Natl Acad Sci U S A 2015 Feb 9;112(8):2515-20. Epub 2015 Feb 9.

University of New Mexico Cancer Center and Divisions of Hematology and Medical Oncology, Department of Internal Medicine, University of New Mexico School of Medicine, Albuquerque, NM 87131

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http://dx.doi.org/10.1073/pnas.1500097112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4345585PMC
February 2015

Long-term results of first salvage treatment in CLL patients treated initially with FCR (fludarabine, cyclophosphamide, rituximab).

Authors:
Constantine S Tam Susan O'Brien William Plunkett William Wierda Alessandra Ferrajoli Xuemei Wang Kim-Anh Do Jorge Cortes Issa Khouri Hagop Kantarjian Susan Lerner Michael J Keating

Blood 2014 Nov 3;124(20):3059-64. Epub 2014 Oct 3.

Leukemia Department, University of Texas MD Anderson Cancer Center, Houston, TX;

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4231417PMC
November 2014

Association between germline single nucleotide polymorphisms in the PI3K-AKT-mTOR pathway, obesity, and breast cancer disease-free survival.

Authors:
Mala Pande Melissa L Bondy Kim-Anh Do Aysegul A Sahin Jun Ying Gordon B Mills Patricia A Thompson Abenaa M Brewster

Breast Cancer Res Treat 2014 Sep 10;147(2):381-7. Epub 2014 Aug 10.

Department of Gastroenterology - Research, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4174407PMC
September 2014

Catalytic mTOR inhibitors can overcome intrinsic and acquired resistance to allosteric mTOR inhibitors.

Authors:
Burhan Hassan Argun Akcakanat Takafumi Sangai Kurt W Evans Farrell Adkins Agda Karina Eterovic Hao Zhao Ken Chen Huiqin Chen Kim-Anh Do Shelly M Xie Ashley M Holder Aung Naing Gordon B Mills Funda Meric-Bernstam

Oncotarget 2014 Sep;5(18):8544-57

Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX. Department of Investigational Cancer Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX.

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http://dx.doi.org/10.18632/oncotarget.2337DOI Listing
September 2014

Bayesian hierarchical structured variable selection methods with application to MIP studies in breast cancer.

Authors:
Lin Zhang Veerabhadran Baladandayuthapani Bani K Mallick Ganiraju C Manyam Patricia A Thompson Melissa L Bondy Kim-Anh Do

J R Stat Soc Ser C Appl Stat 2014 Aug;63(4):595-620

Department of Biostatistics, The University of Texas M.D. Anderson Cancer Center, Houston, Texas, U.S.A.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4334391PMC
August 2014

Colocalized delivery of rapamycin and paclitaxel to tumors enhances synergistic targeting of the PI3K/Akt/mTOR pathway.

Authors:
Elvin Blanco Takafumi Sangai Suhong Wu Angela Hsiao Guillermo U Ruiz-Esparza Carlos A Gonzalez-Delgado Francisca E Cara Sergio Granados-Principal Kurt W Evans Argun Akcakanat Ying Wang Kim-Anh Do Funda Meric-Bernstam Mauro Ferrari

Mol Ther 2014 Jul 26;22(7):1310-1319. Epub 2014 Feb 26.

Department of Nanomedicine, The Houston Methodist Research Institute, Houston, Texas, USA. Electronic address:

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4088997PMC
July 2014

Influence of biospecimen variables on proteomic biomarkers in breast cancer.

Authors:
Funda Meric-Bernstam Argun Akcakanat Huiqin Chen Aysegul Sahin Emily Tarco Selin Carkaci Beatriz E Adrada Gopal Singh Kim-Anh Do Zerzhinski M Garces Elizabeth Mittendorf Gildy Babiera Isabelle Bedrosian Rosa Hwang Savitri Krishnamurthy William F Symmans Ana Maria Gonzalez-Angulo Gordon B Mills

Clin Cancer Res 2014 Jul 3;20(14):3870-83. Epub 2014 Jun 3.

Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas; and.

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http://dx.doi.org/10.1158/1078-0432.CCR-13-1507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4112583PMC
July 2014

Integrative network-based Bayesian analysis of diverse genomics data.

Authors:
Wenting Wang Veerabhadran Baladandayuthapani Chris C Holmes Kim-Anh Do

BMC Bioinformatics 2013 1;14 Suppl 13:S8. Epub 2013 Oct 1.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3849715PMC
May 2014

How to get the most from microarray data: advice from reverse genomics.

Authors:
Ivan P Gorlov Ji-Yeon Yang Jinyoung Byun Christopher Logothetis Olga Y Gorlova Kim-Anh Do Christopher Amos

BMC Genomics 2014 Mar 21;15:223. Epub 2014 Mar 21.

Department of Genitourinary Medical Oncology, Unit 1374, The University of Texas MD Anderson Cancer Center, 1155 Pressler Street, Houston, TX 77030-3721, USA.

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http://dx.doi.org/10.1186/1471-2164-15-223DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3997969PMC
March 2014

Differences in gene and protein expression and the effects of race/ethnicity on breast cancer subtypes.

Authors:
Mariana Chavez-Macgregor Shuying Liu Debora De Melo-Gagliato Huiqin Chen Kim-Anh Do Lajos Pusztai W Fraser Symmans Lakshmy Nair Gabriel N Hortobagyi Gordon B Mills Funda Meric-Bernstam Ana M Gonzalez-Angulo

Cancer Epidemiol Biomarkers Prev 2014 Feb 2;23(2):316-23. Epub 2013 Dec 2.

Authors' Affiliations: Departments of Breast Medical Oncology, Biostatistics, Pathology, Systems Biology, and Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas; and Division of Hematology-Oncology, Yale University, New Haven, Connecticut.

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http://dx.doi.org/10.1158/1055-9965.EPI-13-0929DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3946290PMC
February 2014

Genomic copy number imbalances associated with bone and non-bone metastasis of early-stage breast cancer.

Authors:
Yanhong Liu Renke Zhou Lars O Baumbusch Spyros Tsavachidis Abenaa M Brewster Kim-Anh Do Aysegul Sahin Gabriel N Hortobagyi Joseph H Taube Sendurai A Mani Jørgen Aarøe Fredrik Wärnberg Anne-Lise Børresen-Dale Gordon B Mills Patricia A Thompson Melissa L Bondy

Breast Cancer Res Treat 2014 Jan 4;143(1):189-201. Epub 2013 Dec 4.

Department of Pediatrics, Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA,

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http://dx.doi.org/10.1007/s10549-013-2796-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3993091PMC
January 2014

The relationship between eight GWAS-identified single-nucleotide polymorphisms and primary breast cancer outcomes.

Authors:
Soley Bayraktar Patricia A Thompson Suk-Young Yoo Kim-anh Do Aysegul A Sahin Banu K Arun Melissa L Bondy Abenaa M Brewster

Oncologist 2013 1;18(5):493-500. Epub 2013 May 1.

Department of Medical Oncology, Mercy Cancer Center, Ardmore, Oklahoma, USA.

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http://dx.doi.org/10.1634/theoncologist.2012-0419DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3662839PMC
December 2013

Bayesian decision theoretic multiple comparison procedures: an application to phage display data.

Authors:
Luis G León-Novelo Peter Müller Wahid Arap Jessica Sun Renata Pasqualini Kim-Anh Do

Biom J 2013 May 20;55(3):478-89. Epub 2012 Dec 20.

Department of Mathematics, University of Louisiana at Lafayette, LA 70504-1010, USA.

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http://dx.doi.org/10.1002/bimj.201200051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3840910PMC
May 2013

Model averaging strategies for structure learning in Bayesian networks with limited data.

Authors:
Bradley M Broom Kim-Anh Do Devika Subramanian

BMC Bioinformatics 2012 24;13 Suppl 13:S10. Epub 2012 Aug 24.

Department of Bioinformatics and Computational Biology, UT MD Anderson Cancer Center, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1186/1471-2105-13-S13-S10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3426799PMC
May 2013

Prognostic value of single nucleotide polymorphisms of candidate genes associated with inflammation in early stage breast cancer.

Authors:
James L Murray Patricia Thompson Suk Young Yoo Kim-Anh Do Mala Pande Renke Zhou Yanhong Liu Aysegul A Sahin Melissa L Bondy Abenaa M Brewster

Breast Cancer Res Treat 2013 Apr 26;138(3):917-24. Epub 2013 Mar 26.

The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1007/s10549-013-2445-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746974PMC
April 2013

Genetic variants in the vitamin D pathway and breast cancer disease-free survival.

Authors:
Mala Pande Patricia A Thompson Kim-Anh Do Aysegul A Sahin Christopher I Amos Marsha L Frazier Melissa L Bondy Abenaa M Brewster

Carcinogenesis 2013 Mar 24;34(3):587-94. Epub 2012 Nov 24.

Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/carcin/bgs369DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3581599PMC
March 2013

Semiparametric Bayesian inference for phage display data.

Authors:
Luis G León-Novelo Peter Müller Wadih Arap Mikhail Kolonin Jessica Sun Renata Pasqualini Kim-Anh Do

Biometrics 2013 Mar 22;69(1):174-83. Epub 2013 Jan 22.

Department of Mathematics, University of Louisiana at Lafayette, Lafayette, Louisiana 70504-1010, USA.

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http://dx.doi.org/10.1111/j.1541-0420.2012.01817.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3622196PMC
March 2013

Frequency of mesenchymal-epithelial transition factor gene (MET) and the catalytic subunit of phosphoinositide-3-kinase (PIK3CA) copy number elevation and correlation with outcome in patients with early stage breast cancer.

Authors:
Ana M Gonzalez-Angulo Huiqin Chen Meghan S Karuturi Mariana Chavez-MacGregor Spyrus Tsavachidis Funda Meric-Bernstam Kim-Anh Do Gabriel N Hortobagyi Patricia A Thompson Gordon B Mills Melissa L Bondy George R Blumenschein

Cancer 2013 Jan 26;119(1):7-15. Epub 2012 Jun 26.

Department of Breast Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, USA.

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http://dx.doi.org/10.1002/cncr.27608DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3461089PMC
January 2013

iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data.

Authors:
Wenting Wang Veerabhadran Baladandayuthapani Jeffrey S Morris Bradley M Broom Ganiraju Manyam Kim-Anh Do

Bioinformatics 2013 Jan 9;29(2):149-59. Epub 2012 Nov 9.

Department of Biostatistics, The University of Texas, MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/bioinformatics/bts655DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3546799PMC
January 2013

High stearoyl-CoA desaturase 1 expression is associated with shorter survival in breast cancer patients.

Authors:
Ashley M Holder Ana M Gonzalez-Angulo Huiqin Chen Argun Akcakanat Kim-Anh Do W Fraser Symmans Lajos Pusztai Gabriel N Hortobagyi Gordon B Mills Funda Meric-Bernstam

Breast Cancer Res Treat 2013 Jan 4;137(1):319-27. Epub 2012 Dec 4.

Department of Surgical Oncology, Unit 1484, The University of Texas MD Anderson Cancer Center, 1400 Pressler Street, Houston, TX 77030, USA.

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http://link.springer.com/10.1007/s10549-012-2354-4
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3556743PMC
January 2013

Biomarkers of response to Akt inhibitor MK-2206 in breast cancer.

Authors:
Takafumi Sangai Argun Akcakanat Huiqin Chen Emily Tarco Yun Wu Kim-Anh Do Todd W Miller Carlos L Arteaga Gordon B Mills Ana Maria Gonzalez-Angulo Funda Meric-Bernstam

Clin Cancer Res 2012 Oct 29;18(20):5816-28. Epub 2012 Aug 29.

Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030-4009, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-12-1141DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3772348PMC
October 2012

Aberrations in translational regulation are associated with poor prognosis in hormone receptor-positive breast cancer.

Authors:
Funda Meric-Bernstam Huiqin Chen Argun Akcakanat Kim-Anh Do Ana Lluch Bryan T Hennessy Gabriel N Hortobagyi Gordon B Mills Ana Gonzalez-Angulo

Breast Cancer Res 2012 Oct 26;14(5):R138. Epub 2012 Oct 26.

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http://dx.doi.org/10.1186/bcr3343DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4053117PMC
October 2012

Impact of low estrogen/progesterone receptor expression on survival outcomes in breast cancers previously classified as triple negative breast cancers.

Authors:
Kanwal P S Raghav Leonel F Hernandez-Aya Xiudong Lei Marianan Chavez-Macgregor Funda Meric-Bernstam Thomas A Buchholz Aysegul Sahin Kim-Anh Do Gabriel N Hortobagyi Ana M Gonzalez-Angulo

Cancer 2012 Mar 11;118(6):1498-506. Epub 2011 Aug 11.

Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1002/cncr.26431DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3217101PMC
March 2012

PIK3CA/PTEN mutations and Akt activation as markers of sensitivity to allosteric mTOR inhibitors.

Authors:
Funda Meric-Bernstam Argun Akcakanat Huiqin Chen Kim-Anh Do Takafumi Sangai Farrell Adkins Ana Maria Gonzalez-Angulo Asif Rashid Katherine Crosby Mei Dong Alexandria T Phan Robert A Wolff Sanjay Gupta Gordon B Mills James Yao

Clin Cancer Res 2012 Mar;18(6):1777-89

Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-11-2123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3307149PMC
March 2012

Selective genomic copy number imbalances and probability of recurrence in early-stage breast cancer.

Authors:
Patricia A Thompson Abenaa M Brewster Do Kim-Anh Veerabhadran Baladandayuthapani Bradley M Broom Mary E Edgerton Karin M Hahn James L Murray Aysegul Sahin Spyros Tsavachidis Yuker Wang Li Zhang Gabriel N Hortobagyi Gordon B Mills Melissa L Bondy

PLoS One 2011 12;6(8):e23543. Epub 2011 Aug 12.

Department of Cellular and Molecular Medicine, Arizona Cancer Center, University of Arizona, Tucson, Arizona, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0023543PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3155554PMC
February 2012

Gene expression, molecular class changes, and pathway analysis after neoadjuvant systemic therapy for breast cancer.

Authors:
Ana M Gonzalez-Angulo Takayuki Iwamoto Shuying Liu Huiqin Chen Kim-Anh Do Gabriel N Hortobagyi Gordon B Mills Funda Meric-Bernstam W Fraser Symmans Lajos Pusztai

Clin Cancer Res 2012 Feb 10;18(4):1109-19. Epub 2012 Jan 10.

Departments of Breast Medical Oncology, Systems Biology, Biostatistics, Surgical Oncology, and Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-11-2762DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3288822PMC
February 2012

Multivariable model for time to first treatment in patients with chronic lymphocytic leukemia.

Authors:
William G Wierda Susan O'Brien Xuemei Wang Stefan Faderl Alessandra Ferrajoli Kim-Anh Do Guillermo Garcia-Manero Jorge Cortes Deborah Thomas Charles A Koller Jan A Burger Susan Lerner Ellen Schlette Lynne Abruzzo Hagop M Kantarjian Michael J Keating

J Clin Oncol 2011 Nov 3;29(31):4088-95. Epub 2011 Oct 3.

The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1200/JCO.2010.33.9002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4876352PMC
November 2011

A peptidomimetic targeting white fat causes weight loss and improved insulin resistance in obese monkeys.

Authors:
Kirstin F Barnhart Dawn R Christianson Patrick W Hanley Wouter H P Driessen Bruce J Bernacky Wallace B Baze Sijin Wen Mei Tian Jingfei Ma Mikhail G Kolonin Pradip K Saha Kim-Anh Do James F Hulvat Juri G Gelovani Lawrence Chan Wadih Arap Renata Pasqualini

Sci Transl Med 2011 Nov;3(108):108ra112

David H. Koch Center, University of Texas M. D. Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1126/scitranslmed.3002621DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3666164PMC
November 2011

Effect of low-fat diets on plasma levels of NF-κB-regulated inflammatory cytokines and angiogenic factors in men with prostate cancer.

Authors:
John V Heymach Terry J Shackleford Hai T Tran Suk-Young Yoo Kim-Anh Do Melanie Wergin Pierre Saintigny Robin T Vollmer Thomas J Polascik Denise C Snyder Mack T Ruffin Shaoyu Yan Mark Dewhirst Ajaikumar B Kunnumakkara Bharat B Aggarwal Wendy Demark-Wahnefried

Cancer Prev Res (Phila) 2011 Oct 15;4(10):1590-8. Epub 2011 Jul 15.

Department of Thoracic/Head and Neck Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, 77030, USA.

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http://dx.doi.org/10.1158/1940-6207.CAPR-10-0136DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3438697PMC
October 2011

Nodal status and clinical outcomes in a large cohort of patients with triple-negative breast cancer.

Authors:
Leonel F Hernandez-Aya Mariana Chavez-Macgregor Xiudong Lei Funda Meric-Bernstam Thomas A Buchholz Limin Hsu Aysegul A Sahin Kim-Anh Do Vicente Valero Gabriel N Hortobagyi Ana Maria Gonzalez-Angulo

J Clin Oncol 2011 Jul 23;29(19):2628-34. Epub 2011 May 23.

Department of Breast Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030-4009, USA

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http://dx.doi.org/10.1200/JCO.2010.32.1877DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3139370PMC
July 2011

Bagged gene shaving for the robust clustering of high-throughput data.

Authors:
Bradley M Broom Erik P Sulman Kim-Anh Do Mary E Edgerton

Int J Bioinform Res Appl 2010 ;6(4):326-43

Department of Bioinformatics and Computational Biology, UT MD Anderson Cancer Center, Houston, Texas 77030, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3879957PMC
http://dx.doi.org/10.1504/IJBRA.2010.035997DOI Listing
April 2011

Incidence and outcome of BRCA mutations in unselected patients with triple receptor-negative breast cancer.

Authors:
Ana M Gonzalez-Angulo Kirsten M Timms Shuying Liu Huiqin Chen Jennifer K Litton Jennifer Potter Jerry S Lanchbury Katherine Stemke-Hale Bryan T Hennessy Banu K Arun Gabriel N Hortobagyi Kim-Anh Do Gordon B Mills Funda Meric-Bernstam

Clin Cancer Res 2011 Mar 13;17(5):1082-9. Epub 2011 Jan 13.

Department of Breast Medical Oncology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030-4009, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-10-2560DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3048924PMC
March 2011

Bayesian ensemble methods for survival prediction in gene expression data.

Authors:
Vinicius Bonato Veerabhadran Baladandayuthapani Bradley M Broom Erik P Sulman Kenneth D Aldape Kim-Anh Do

Bioinformatics 2011 Feb 8;27(3):359-67. Epub 2010 Dec 8.

Pfizer Inc., Groton, CT 06340, USA.

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http://dx.doi.org/10.1093/bioinformatics/btq660DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3031034PMC
February 2011

Building networks with microarray data.

Authors:
Bradley M Broom Waree Rinsurongkawong Lajos Pusztai Kim-Anh Do

Methods Mol Biol 2010 ;620:315-43

Department of Bioinformatics and Computational Biology, University of Texas M. D. Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1007/978-1-60761-580-4_10DOI Listing
November 2010

Rapamycin regulates stearoyl CoA desaturase 1 expression in breast cancer.

Authors:
David Luyimbazi Argun Akcakanat Priscilla F McAuliffe Li Zhang Gopal Singh Ana Maria Gonzalez-Angulo Huiqin Chen Kim-Anh Do Yuhuan Zheng Mien-Chie Hung Gordon B Mills Funda Meric-Bernstam

Mol Cancer Ther 2010 Oct 28;9(10):2770-84. Epub 2010 Sep 28.

Department of Surgical Oncology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas, USA.

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http://mct.aacrjournals.org/cgi/doi/10.1158/1535-7163.MCT-09
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http://dx.doi.org/10.1158/1535-7163.MCT-09-0980DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2965451PMC
October 2010

Factors affecting the decision of breast cancer patients to undergo contralateral prophylactic mastectomy.

Authors:
Min Yi Kelly K Hunt Banu K Arun Isabelle Bedrosian Angelica Gutierrez Barrera Kim-Anh Do Henry M Kuerer Gildy V Babiera Elizabeth A Mittendorf Kaylene Ready Jennifer Litton Funda Meric-Bernstam

Cancer Prev Res (Phila) 2010 Aug 20;3(8):1026-34. Epub 2010 Jul 20.

Department of Surgical Oncology, The University of Texas M.D. Anderson Cancer Center, Houston, 77030, USA.

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http://dx.doi.org/10.1158/1940-6207.CAPR-09-0130DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4340054PMC
August 2010

A Bayesian semiparametric survival model with longitudinal markers.

Authors:
Song Zhang Peter Müller Kim-Anh Do

Biometrics 2010 Jun 8;66(2):435-43. Epub 2009 Jun 8.

Department of Clinical Sciences, Division of Biostatistics, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.

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http://dx.doi.org/10.1111/j.1541-0420.2009.01276.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3045702PMC
June 2010

Morphologic characterization of preoperatively treated prostate cancer: toward a post-therapy histologic classification.

Authors:
Eleni Efstathiou Neil A Abrahams Rita F Tibbs Xuemei Wang Curtis A Pettaway Louis L Pisters Paul F Mathew Kim-Anh Do Christopher J Logothetis Patricia Troncoso

Eur Urol 2010 Jun 17;57(6):1030-8. Epub 2009 Oct 17.

University of Texas, M.D. Anderson Cancer Center, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1016/j.eururo.2009.10.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2962710PMC
June 2010

Quantification of mineralized bone response to prostate cancer by noninvasive in vivo microCT and non-destructive ex vivo microCT and DXA in a mouse model.

Authors:
Murali Ravoori Aneta J Czaplinska Charles Sikes Lin Han Evan M Johnson Wei Qiao Chaan Ng Dianna D Cody William A Murphy Kim-Anh Do Nora M Navone Vikas Kundra

PLoS One 2010 Mar 29;5(3):e9854. Epub 2010 Mar 29.

Department of Experimental Diagnostic Imaging, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0009854PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2847943PMC
March 2010

Extracellular and intracellular mechanisms that mediate the metastatic activity of exogenous osteopontin.

Authors:
Jami Mandelin Emme C K Lin Dana D Hu Susan K Knowles Kim-Anh Do Xuemei Wang E Helene Sage Jeffrey W Smith Wadih Arap Renata Pasqualini

Cancer 2009 Apr;115(8):1753-64

Department of Genitourinary Medical Oncology, The University of Texas M. D. Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1002/cncr.24170DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2743165PMC
April 2009

Characteristics associated with important clinical end points in patients with chronic lymphocytic leukemia at initial treatment.

Authors:
William G Wierda Susan O'Brien Xuemei Wang Stefan Faderl Alessandra Ferrajoli Kim-Anh Do Guillermo Garcia-Manero Jorge Cortes Deborah Thomas Charles Koller Jan Burger Susan Lerner Hagop Kantarjian Michael Keating

J Clin Oncol 2009 Apr 17;27(10):1637-43. Epub 2009 Feb 17.

Department of Leukemia and Biostatistics and Applied Mathematics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://ascopubs.org/doi/10.1200/JCO.2008.18.1701
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http://dx.doi.org/10.1200/JCO.2008.18.1701DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4890649PMC
April 2009

Selenium and vitamin E: cell type- and intervention-specific tissue effects in prostate cancer.

Authors:
Dimitra Tsavachidou Timothy J McDonnell Sijin Wen Xuemei Wang Funda Vakar-Lopez Louis L Pisters Curtis A Pettaway Christopher G Wood Kim-Anh Do Peter F Thall Clifton Stephens Eleni Efstathiou Robert Taylor David G Menter Patricia Troncoso Scott M Lippman Christopher J Logothetis Jeri Kim

J Natl Cancer Inst 2009 Mar 24;101(5):306-20. Epub 2009 Feb 24.

Department of Systems Biology, The University of Texas M. D. Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/jnci/djn512DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2734116PMC
March 2009

Polymorphisms in genes involved in neurodevelopment may be associated with altered brain morphology in schizophrenia: preliminary evidence.

Authors:
Sheila P Gregório Paulo C Sallet Kim-Anh Do E Lin Wagner F Gattaz Emmanuel Dias-Neto

Psychiatry Res 2009 Jan 2;165(1-2):1-9. Epub 2008 Dec 2.

Laboratório de Neurociências (LIM-27), Departmento e Instituto de Psiquiatria, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil.

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http://dx.doi.org/10.1016/j.psychres.2007.08.011DOI Listing
January 2009

Cytoplasmic sequestration of p27 via AKT phosphorylation in renal cell carcinoma.

Authors:
Jinhee Kim Eric Jonasch Angela Alexander John D Short Shengli Cai Sijin Wen Dimitra Tsavachidou Pheroze Tamboli Bogdan A Czerniak Kim Anh Do Kevin J Wu Laura A Marlow Christopher G Wood John A Copland Cheryl Lyn Walker

Clin Cancer Res 2009 Jan;15(1):81-90

Department of Carcinogenesis, The University of Texas M. D. Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-08-0170DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3030253PMC
January 2009

Association and interactions between DNA repair gene polymorphisms and adult glioma.

Authors:
Yanhong Liu Michael E Scheurer Randa El-Zein Yumei Cao Kim-Anh Do Mark Gilbert Kenneth D Aldape Qingyi Wei Carol Etzel Melissa L Bondy

Cancer Epidemiol Biomarkers Prev 2009 Jan;18(1):204-14

Department of Epidemiology, The University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA.

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http://dx.doi.org/10.1158/1055-9965.EPI-08-0632DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2917049PMC
January 2009

Phase III trial of androgen ablation with or without three cycles of systemic chemotherapy for advanced prostate cancer.

Authors:
Randall E Millikan Sijin Wen Lance C Pagliaro Melissa A Brown Brenda Moomey Kim-Anh Do Christopher J Logothetis

J Clin Oncol 2008 Dec 24;26(36):5936-42. Epub 2008 Nov 24.

Department of Genitourinary Medical Oncology, University of Texas MD Anderson Cancer Center, 1155 Pressler, CPB7.3462, Houston, TX 77030, USA.

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http://dx.doi.org/10.1200/JCO.2007.15.9830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3864402PMC
December 2008

Targeting the EGFR, VEGFR, and PDGFR on colon cancer cells and stromal cells is required for therapy.

Authors:
Toshio Kuwai Toru Nakamura Takamitsu Sasaki Yasuhiko Kitadai Jang-Seong Kim Robert R Langley Dominic Fan Xuemei Wang Kim-Anh Do Sun-Jin Kim Isaiah J Fidler

Clin Exp Metastasis 2008 7;25(4):477-89. Epub 2008 Mar 7.

Department of Cancer Biology, Unit 173, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1007/s10585-008-9153-7DOI Listing
August 2008

Long-term results of the fludarabine, cyclophosphamide, and rituximab regimen as initial therapy of chronic lymphocytic leukemia.

Authors:
Constantine S Tam Susan O'Brien William Wierda Hagop Kantarjian Sijin Wen Kim-Anh Do Deborah A Thomas Jorge Cortes Susan Lerner Michael J Keating

Blood 2008 Aug 14;112(4):975-80. Epub 2008 Apr 14.

Departments ofLeukemia, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1182/blood-2008-02-140582DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3952498PMC
August 2008

Soluble ErbB3 levels in bone marrow and plasma of men with prostate cancer.

Authors:
Sue-Hwa Lin Yu-Chen Lee Michel B Choueiri Sijin Wen Paul Mathew Xiangcang Ye Kim-Anh Do Nora M Navone Jeri Kim Shi-Ming Tu Li-Yuan Yu-Lee Christopher J Logothetis

Clin Cancer Res 2008 Jun;14(12):3729-36

Department of Molecular Pathology, The University of Texas M. D. Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-08-0472DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2562877PMC
June 2008

Biomarker expression patterns that correlate with high grade features in treatment naive, organ-confined prostate cancer.

Authors:
Timothy J McDonnell Nikhil S Chari Jeong Hee Cho-Vega Patricia Troncoso Xuemei Wang Carlos E Bueso-Ramos Kevin Coombes Shawn Brisbay Remigio Lopez George Prendergast Christopher Logothetis Kim-Anh Do

BMC Med Genomics 2008 Jan 31;1. Epub 2008 Jan 31.

Department of Hematopathology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd, Houston, Texas 77030 USA.

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http://dx.doi.org/10.1186/1755-8794-1-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2227949PMC
January 2008

Dicarbonyl/L-xylulose reductase: a potential biomarker identified by laser-capture microdissection-micro serial analysis of gene expression of human prostate adenocarcinoma.

Authors:
Jeong Hee Cho-Vega Spiridon Tsavachidis Kim-Anh Do Junichi Nakagawa L Jeffrey Medeiros Timothy J McDonnell

Cancer Epidemiol Biomarkers Prev 2007 Dec;16(12):2615-22

Department of Pathology, The Methodist Hospital, Houston, TX, USA.

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http://dx.doi.org/10.1158/1055-9965.EPI-07-0684DOI Listing
December 2007

Employing the treatment-free interval of intermittent androgen ablation to screen candidate prostate cancer therapies.

Authors:
Shifeng Mao Danai D Daliani Xuemei Wang Peter F Thall Kim-Anh Do Cherie A Perez Melissa A Brown Kathleen Bouchillon Cindy M Carter Christopher J Logothetis Jeri Kim

Prostate 2007 Nov;67(15):1677-85

Department of Genitourinary Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030-3721, USA.

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http://dx.doi.org/10.1002/pros.20649DOI Listing
November 2007

Relationship between epidemiologic risk factors and breast cancer recurrence.

Authors:
Abenaa M Brewster Kim-Anh Do Patricia A Thompson Karin M Hahn Aysegul A Sahin Yumei Cao Maureen M Stewart James L Murray Gabriel N Hortobagyi Melissa L Bondy

J Clin Oncol 2007 Oct 4;25(28):4438-44. Epub 2007 Sep 4.

Department of Clinical Cancer Prevention, The University of Texas M.D. Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1200/JCO.2007.10.6815DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6559726PMC
October 2007

Treatment outcomes of small cell carcinoma of the prostate: a single-center study.

Authors:
Philippe E Spiess Curtis A Pettaway Funda Vakar-Lopez Wassim Kassouf Xuemei Wang Joseph E Busby Kim-Anh Do Rajayogesh Davuluri Nizar M Tannir

Cancer 2007 Oct;110(8):1729-37

Department of Urologic Oncology, The University of Texas M. D. Anderson Cancer Center, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1002/cncr.22971DOI Listing
October 2007

Assessment of chronic lymphocytic leukemia and small lymphocytic lymphoma by absolute lymphocyte counts in 2,126 patients: 20 years of experience at the University of Texas M.D. Anderson Cancer Center.

Authors:
Apostolia M Tsimberidou Sijin Wen Susan O'Brien Peter McLaughlin William G Wierda Alessandra Ferrajoli Stefan Faderl John Manning Susan Lerner Chinh V Mai Alma M Rodriguez Mark Hess Kim-Anh Do Emil J Freireich Hagop M Kantarjian L Jeffrey Medeiros Michael J Keating

J Clin Oncol 2007 Oct;25(29):4648-56

Department of Leukemia, The University of Texas M.D. Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1200/JCO.2006.09.4508DOI Listing
October 2007