Kim E Hammond-Kosack

Kim E Hammond-Kosack

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Kim E Hammond-Kosack

Kim E Hammond-Kosack

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PHI-base: the pathogen-host interactions database.

Nucleic Acids Res 2020 Jan;48(D1):D613-D620

Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden AL5 2JQ, UK.

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http://dx.doi.org/10.1093/nar/gkz904DOI Listing
January 2020

Non-canonical fungal G-protein coupled receptors promote Fusarium head blight on wheat.

PLoS Pathog 2019 04 1;15(4):e1007666. Epub 2019 Apr 1.

Biointeractions and Crop Protection, Rothamsted Research, Hertfordshire, United Kingdom.

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http://dx.doi.org/10.1371/journal.ppat.1007666DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6459559PMC
April 2019

: A Viral Vector for Protein Expression in Cereals.

Plant Physiol 2018 08 7;177(4):1352-1367. Epub 2018 Jun 7.

Biointeractions and Crop Protection, Rothamsted Research, Harpenden AL5 2JQ, United Kingdom

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http://dx.doi.org/10.1104/pp.17.01679DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6084670PMC
August 2018

A review of wheat diseases-a field perspective.

Mol Plant Pathol 2018 06 26;19(6):1523-1536. Epub 2017 Dec 26.

Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT 2601, Australia.

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http://dx.doi.org/10.1111/mpp.12618DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6638159PMC
June 2018

Sharing mutants and experimental information prepublication using FgMutantDb (https://scabusa.org/FgMutantDb).

Fungal Genet Biol 2018 06 3;115:90-93. Epub 2018 Feb 3.

National Small Grains Germplasm Research Facility, USDA-ARS, Aberdeen, ID, United States.

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http://dx.doi.org/10.1016/j.fgb.2018.01.002DOI Listing
June 2018

The adaptation of to DMI Fungicides Is Mediated by Major Transcriptome Modifications in Response to Azole Fungicide, Including the Overexpression of a PDR Transporter (FcABC1).

Front Microbiol 2018 26;9:1385. Epub 2018 Jun 26.

Earth and Life Institute, Applied Microbiology, Phytopathology, Université Catholique de Louvain, Louvain-la-Neuve, Belgium.

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http://dx.doi.org/10.3389/fmicb.2018.01385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028722PMC
June 2018

Elite UK winter wheat cultivars differ in their ability to support the colonization of beneficial root-infecting fungi.

J Exp Bot 2018 05;69(12):3103-3115

Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden, Hertfordshire, UK.

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http://dx.doi.org/10.1093/jxb/ery136DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5972604PMC
May 2018

RNAi as an emerging approach to control Fusarium head blight disease and mycotoxin contamination in cereals.

Pest Manag Sci 2018 Apr 22;74(4):790-799. Epub 2017 Nov 22.

Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden, UK.

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http://doi.wiley.com/10.1002/ps.4748
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http://dx.doi.org/10.1002/ps.4748DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5873435PMC
April 2018

Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum.

BMC Genomics 2018 Apr 19;19(1):269. Epub 2018 Apr 19.

Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK.

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http://dx.doi.org/10.1186/s12864-018-4612-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5907747PMC
April 2018

A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection.

Mol Plant Pathol 2017 12 8;18(9):1295-1312. Epub 2017 Aug 8.

Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK.

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http://dx.doi.org/10.1111/mpp.12564DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5697668PMC
December 2017

Annotation of Fusarium graminearum (PH-1) Version 5.0.

Genome Announc 2017 Jan 12;5(2). Epub 2017 Jan 12.

Rothamsted Research, Harpenden, Herts, United Kingdom.

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http://dx.doi.org/10.1128/genomeA.01479-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5256205PMC
January 2017

Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base.

Front Plant Sci 2016 12;7:641. Epub 2016 May 12.

Center for Plant Biotechnology and Genomics, Universidad Politécnica de Madrid Madrid, Spain.

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http://dx.doi.org/10.3389/fpls.2016.00641DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4922217PMC
July 2016

The trans-kingdom identification of negative regulators of pathogen hypervirulence.

FEMS Microbiol Rev 2016 Jan 13;40(1):19-40. Epub 2015 Oct 13.

Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts AL5 2JQ, UK

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http://dx.doi.org/10.1093/femsre/fuv042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4703069PMC
January 2016

Host to a Stranger: Arabidopsis and Fusarium Ear Blight.

Trends Plant Sci 2015 Oct;20(10):651-663

Plant Biology and Crop Science, Rothamsted Research, Harpenden AL5 2JQ, UK. Electronic address:

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http://dx.doi.org/10.1016/j.tplants.2015.06.011DOI Listing
October 2015

Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence.

Front Plant Sci 2015 6;6:605. Epub 2015 Aug 6.

Department of Plant Biology and Crop Science, Rothamsted Research Harpenden, UK.

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http://dx.doi.org/10.3389/fpls.2015.00605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4526803PMC
August 2015

The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum.

BMC Genomics 2015 Jul 22;16:544. Epub 2015 Jul 22.

Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK.

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http://dx.doi.org/10.1186/s12864-015-1756-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511438PMC
July 2015

Deregulation of Plant Cell Death Through Disruption of Chloroplast Functionality Affects Asexual Sporulation of Zymoseptoria tritici on Wheat.

Mol Plant Microbe Interact 2015 May 22;28(5):590-604. Epub 2015 Apr 22.

1Wheat Pathogenomics Team, Plant Biology and Crop Science Department, Rothamsted Research, Harpenden, AL5 2JQ, U.K.;

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http://dx.doi.org/10.1094/MPMI-10-14-0346-RDOI Listing
May 2015

Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions.

BMC Genomics 2015 Apr 3;16:261. Epub 2015 Apr 3.

Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK.

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http://dx.doi.org/10.1186/s12864-015-1412-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4404607PMC
April 2015

Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition.

Plant Physiol 2015 Mar 16;167(3):1158-85. Epub 2015 Jan 16.

Department of Plant Biology and Crop Science (J.J.R., K.K., M.D., J.D., J.H., K.E.H.-K.) and Department of Computational and Systems Biology (K.H.-P., A.A., A.L., M.S., S.J.P.), Rothamsted Research, Harpenden, Hertshire AL5 2JQ, United Kingdom;Metabolon, Inc., Durham, North Carolina 27713 (N.M.D.);Syngenta Biotechnology, Inc., Research Triangle Park, North Carolina 27709 (L.A., A.B., R.A.D.);National Center for Genome Resources, Santa Fe, New Mexico 87505 (A.F.); andSyngenta Crop Protection AG, Crop Protection Research, CH-4332 Stein, Switzerland (M.C.).

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http://dx.doi.org/10.1104/pp.114.255927DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4348787PMC
March 2015

The Pathogen-Host Interactions database (PHI-base): additions and future developments.

Nucleic Acids Res 2015 Jan 20;43(Database issue):D645-55. Epub 2014 Nov 20.

Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK.

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http://dx.doi.org/10.1093/nar/gku1165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383963PMC
January 2015

FcStuA from Fusarium culmorum controls wheat foot and root rot in a toxin dispensable manner.

PLoS One 2013 22;8(2):e57429. Epub 2013 Feb 22.

Environment and Agro-biotechnologies Department, Centre de Recherche Public-Gabriel Lippmann, Belvaux, Luxembourg.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0057429PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3579838PMC
January 2014

Characterization of the sterol 14α-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function.

New Phytol 2013 May 27;198(3):821-35. Epub 2013 Feb 27.

Department of Plant Pathology, China Agricultural University, Beijing, 100193, China.

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http://doi.wiley.com/10.1111/nph.12193
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http://dx.doi.org/10.1111/nph.12193DOI Listing
May 2013

Exploitation of genomics in fungicide research: current status and future perspectives.

Mol Plant Pathol 2013 Feb 16;14(2):197-210. Epub 2012 Nov 16.

Department of Biological Chemistry and Crop Protection, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK.

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http://dx.doi.org/10.1111/mpp.12001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6638899PMC
February 2013

Barley stripe mosaic virus-mediated tools for investigating gene function in cereal plants and their pathogens: virus-induced gene silencing, host-mediated gene silencing, and virus-mediated overexpression of heterologous protein.

Plant Physiol 2012 Oct 10;160(2):582-90. Epub 2012 Aug 10.

Wheat Pathogenomics Team, Plant Biology and Crop Science Department, Rothamsted Research, Harpenden AL5 2JQ, United Kingdom.

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http://dx.doi.org/10.1104/pp.112.203489DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3461540PMC
October 2012

The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis.

PLoS One 2012 6;7(4):e33731. Epub 2012 Apr 6.

Centre for Sustainable Pest and Disease Management, Department of Plant Pathology and Microbiology, Rothamsted Research, Harpenden, Hertfordshire, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0033731PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3320895PMC
September 2012

Characterisation of the Fusarium graminearum-Wheat Floral Interaction.

J Pathog 2011 5;2011:626345. Epub 2011 Oct 5.

Department of Plant Pathology and Microbiology, Centre for Sustainable Pest and Disease Management, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK.

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http://dx.doi.org/10.4061/2011/626345DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3335584PMC
August 2012

The Top 10 fungal pathogens in molecular plant pathology.

Mol Plant Pathol 2012 May;13(4):414-30

Department of Plant Pathology, Fungal Genomics Laboratory, North Carolina State University, Raleigh, NC 27695, USA.

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http://dx.doi.org/10.1111/j.1364-3703.2011.00783.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6638784PMC
May 2012

The induction of mycotoxins by trichothecene producing Fusarium species.

Methods Mol Biol 2012 ;835:439-55

Department of Plant Pathology and Microbiology, Centre for Sustainable Pest and Disease Management, Rothamsted Research, Harpenden, UK.

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http://dx.doi.org/10.1007/978-1-61779-501-5_27DOI Listing
April 2012

OmniMapFree: a unified tool to visualise and explore sequenced genomes.

BMC Bioinformatics 2011 Nov 15;12:447. Epub 2011 Nov 15.

Centre for Sustainable Pest and Disease Management, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-12-447DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3251307PMC
November 2011

Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat.

Plant Physiol 2011 Jun 5;156(2):756-69. Epub 2011 Apr 5.

Centre for Sustainable Pest and Disease Management, Department of Plant Pathology and Microbiology, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, United Kingdom.

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http://dx.doi.org/10.1104/pp.111.176347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3177273PMC
June 2011

The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves.

J Plant Physiol 2011 Jan 4;168(1):63-71. Epub 2010 Aug 4.

Centre for Pest and Disease Management, Rothamsted Research, Harpenden, Herts, UK.

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http://dx.doi.org/10.1016/j.jplph.2010.05.024DOI Listing
January 2011

A combined ¹H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp.

Mol Plant Microbe Interact 2010 Dec;23(12):1605-18

Centre for Sustainable Pest and Disease Management, Department of Plant Pathology and Microbiology, Rothamsted Research, West Common, Harpenden, AL5 2JQ, UK.

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http://dx.doi.org/10.1094/MPMI-04-10-0092DOI Listing
December 2010

The infection biology of Fusarium graminearum: defining the pathways of spikelet to spikelet colonisation in wheat ears.

Fungal Biol 2010 Jul 24;114(7):555-71. Epub 2010 Apr 24.

Centre for Sustainable Pest and Disease Management, Department of Plant Pathology and Microbiology, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.

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http://dx.doi.org/10.1016/j.funbio.2010.04.006DOI Listing
July 2010

A role for topoisomerase I in Fusarium graminearum and F. culmorum pathogenesis and sporulation.

Mol Plant Microbe Interact 2010 May;23(5):566-77

Centre for Sustainable Pest and Disease Management, Department of Plant Pathology and Microbiology, Rothamsted Research, Hertfordshire, UK.

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http://apsjournals.apsnet.org/doi/10.1094/MPMI-23-5-0566
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http://dx.doi.org/10.1094/MPMI-23-5-0566DOI Listing
May 2010

High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley.

Theor Appl Genet 2009 Sep 4;119(5):851-65. Epub 2009 Jul 4.

Department of Plant Pathology and Microbiology, Centre for Sustainable Pest and Disease Management, Rothamsted Research, Harpenden AL5 2JQ, UK.

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http://dx.doi.org/10.1007/s00122-009-1094-2DOI Listing
September 2009

DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum.

BMC Genomics 2009 Sep 30;10:458. Epub 2009 Sep 30.

Centre for Sustainable Pest and Disease Management, Department of Plant Pathology and Microbiology, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.

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http://dx.doi.org/10.1186/1471-2164-10-458DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2764732PMC
September 2009

Molecular characterization and functional analysis of MgNLP, the sole NPP1 domain-containing protein, from the fungal wheat leaf pathogen Mycosphaerella graminicola.

Mol Plant Microbe Interact 2009 Jul;22(7):790-9

Centre for Sustainable Pest and Disease Management, Department of Plant Pathology and Microbiology, Rothamsted Research, Harpenden, Herts, UK.

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http://dx.doi.org/10.1094/MPMI-22-7-0790DOI Listing
July 2009

Characterization of two unusual features of resistance to soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues.

Mol Plant Microbe Interact 2009 May;22(5):560-74

Center for Sustainable Pest and Disease Management, Department of Plant Pathology and Microbiology, Rothamsted Research, Hertfordshire, UK.

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http://dx.doi.org/10.1094/MPMI-22-5-0560DOI Listing
May 2009

Lack of the plant signalling component SGT1b enhances disease resistance to Fusarium culmorum in Arabidopsis buds and flowers.

New Phytol 2009 Mar;181(4):901-12

Department of Plant Pathology and Microbiology, Rothamsted Research, Harpenden, Hertfordshire, AL52JQ, UK.

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http://dx.doi.org/10.1111/j.1469-8137.2008.02712.xDOI Listing
March 2009

Phenotypic and genetic analysis of the Triticum monococcum-Mycosphaerella graminicola interaction.

New Phytol 2008 28;179(4):1121-32. Epub 2008 Jun 28.

Department of Plant Pathology and Microbiology, Centre for Sustainable Pest and Disease Management, Rothamsted Research, Harpenden, Herts, AL5 2JQ, UK.

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http://dx.doi.org/10.1111/j.1469-8137.2008.02526.xDOI Listing
November 2008

Plant resistance signalling hijacked by a necrotrophic fungal pathogen.

Plant Signal Behav 2008 Nov;3(11):993-5

Centre for Sustainable Pest and Disease Management; Department of Plant Pathology and Microbiology; Rothamsted Research; Harpenden, Herts UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2633754PMC
http://dx.doi.org/10.4161/psb.6292DOI Listing
November 2008

Identification and characterization of a novel efficient resistance response to the furoviruses SBWMV and SBCMV in barley.

Mol Plant Microbe Interact 2008 Sep;21(9):1193-204

Centre for Sustainable Pest and Disease Management, Department of Plant Pathology and Microbiology, Rothamsted Research, Harpenden, Hertfordshire, UK.

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http://dx.doi.org/10.1094/MPMI-21-9-1193DOI Listing
September 2008

NPR1 and EDS11 contribute to host resistance against Fusarium culmorum in Arabidopsis buds and flowers.

Mol Plant Pathol 2008 Sep;9(5):697-704

Centre for Sustainable Pest and Disease Management, Department of Plant Pathology and Microbiology, Rothamsted Research, Harpenden, Hertfordshire AL52JQ, UK.

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http://dx.doi.org/10.1111/j.1364-3703.2008.00488.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6640498PMC
September 2008

The wheat mitogen-activated protein kinases TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola.

Plant Physiol 2008 Jun 25;147(2):802-15. Epub 2008 Apr 25.

Centre for Sustainable Pest and Disease Management, Department of Plant Pathology and Microbiology, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, United Kingdom.

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http://dx.doi.org/10.1104/pp.108.119511DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2409019PMC
June 2008

PHI-base update: additions to the pathogen host interaction database.

Nucleic Acids Res 2008 Jan 16;36(Database issue):D572-6. Epub 2007 Oct 16.

Department of Biomathematics and Bioinformatics, Department of Plant Pathology and Microbiology, Rothamsted Research, Harpenden, AL5 2JQ, UK.

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http://dx.doi.org/10.1093/nar/gkm858DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238852PMC
January 2008

The pathogen-host interactions database (PHI-base) provides insights into generic and novel themes of pathogenicity.

Mol Plant Microbe Interact 2006 Dec;19(12):1451-62

Plant-Pathogen Interactions Division, Rothamsted Research, Harpenden, AL5 2JQ, UK.

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http://dx.doi.org/10.1094/MPMI-19-1451DOI Listing
December 2006

Dominant-negative interference with defence signalling by truncation mutations of the tomato Cf-9 disease resistance gene.

Plant J 2006 May;46(3):385-99

Plant Cell Biology Group, Research School of Biological Sciences, The Australian National University, Canberra ACT 0200, Australia.

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http://dx.doi.org/10.1111/j.1365-313X.2006.02699.xDOI Listing
May 2006

PHI-base: a new database for pathogen host interactions.

Nucleic Acids Res 2006 Jan;34(Database issue):D459-64

Biomathematics and Bioinformatics Division, Rothamsted Research, Harpenden, AL5 2JQ, UK.

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http://dx.doi.org/10.1093/nar/gkj047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347410PMC
January 2006

p-Coumaroylnoradrenaline, a novel plant metabolite implicated in tomato defense against pathogens.

J Biol Chem 2003 Oct 4;278(44):43373-83. Epub 2003 Aug 4.

Sainsbury Laboratory, Norwich Research Park, Colney Lane, Norwich, NR4 7UH, United Kingdom.

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http://dx.doi.org/10.1074/jbc.M305084200DOI Listing
October 2003

Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding.

Curr Opin Biotechnol 2003 Apr;14(2):177-93

Rothamsted Research, Plant-Pathogen Interactions Division, Harpenden, Herts, AL5 2JQ, UK.

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http://dx.doi.org/10.1016/s0958-1669(03)00035-1DOI Listing
April 2003

PLANT DISEASE RESISTANCE GENES.

Annu Rev Plant Physiol Plant Mol Biol 1997 Jun;48:575-607

The Sainsbury Laboratory, John Innes Center, Colney Lane, Norwich, Norfolk NR4 7UH, United Kingdom.

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http://www.annualreviews.org/doi/10.1146/annurev.arplant.48.
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http://dx.doi.org/10.1146/annurev.arplant.48.1.575DOI Listing
June 1997