Kim D Pruitt

Kim D Pruitt

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Kim D Pruitt

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Database resources of the National Center for Biotechnology Information.

Nucleic Acids Res 2019 Oct 11. Epub 2019 Oct 11.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1093/nar/gkz899DOI Listing
October 2019

GenBank.

Nucleic Acids Res 2019 Jan;47(D1):D94-D99

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky989DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323954PMC
January 2019

RefSeq curation and annotation of stop codon recoding in vertebrates.

Nucleic Acids Res 2019 01;47(2):594-606

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky1234DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6344875PMC
January 2019

GenBank.

Nucleic Acids Res 2018 01;46(D1):D41-D47

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://academic.oup.com/nar/article/46/D1/D41/4621329
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http://dx.doi.org/10.1093/nar/gkx1094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753231PMC
January 2018

NCBI prokaryotic genome annotation pipeline.

Nucleic Acids Res 2016 08 24;44(14):6614-24. Epub 2016 Jun 24.

National Center for Biotechnology Information, U.S. National Library of Medicine, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1093/nar/gkw569DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001611PMC
August 2016

Assembly: a resource for assembled genomes at NCBI.

Nucleic Acids Res 2016 Jan 17;44(D1):D73-80. Epub 2015 Nov 17.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1093/nar/gkv1226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702866PMC
January 2016

Mouse genome annotation by the RefSeq project.

Mamm Genome 2015 Oct 28;26(9-10):379-90. Epub 2015 Jul 28.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD, 20894, USA.

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http://dx.doi.org/10.1007/s00335-015-9585-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4602073PMC
October 2015

RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates.

Nucleic Acids Res 2015 Sep 13;43(15):7270-9. Epub 2015 Jul 13.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA

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http://dx.doi.org/10.1093/nar/gkv713DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551939PMC
September 2015

Gene: a gene-centered information resource at NCBI.

Nucleic Acids Res 2015 Jan 29;43(Database issue):D36-42. Epub 2014 Oct 29.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892-6510, USA

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http://dx.doi.org/10.1093/nar/gku1055DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383897PMC
January 2015

HIV-1, human interaction database: current status and new features.

Nucleic Acids Res 2015 Jan 6;43(Database issue):D566-70. Epub 2014 Nov 6.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA

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http://dx.doi.org/10.1093/nar/gku1126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383939PMC
January 2015

Current status and new features of the Consensus Coding Sequence database.

Nucleic Acids Res 2014 Jan 11;42(Database issue):D865-72. Epub 2013 Nov 11.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA, Center for Biomolecular Science and Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK and Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1093/nar/gkt1059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965069PMC
January 2014

Comparison of RefSeq protein-coding regions in human and vertebrate genomes.

BMC Genomics 2013 Sep 25;14:654. Epub 2013 Sep 25.

National Center for Biotechnology Information, U,S, National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1186/1471-2164-14-654DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3882889PMC
September 2013

Tracking and coordinating an international curation effort for the CCDS Project.

Database (Oxford) 2012 20;2012:bas008. Epub 2012 Mar 20.

Center for Biomolecular Science and Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1093/database/bas008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308164PMC
June 2012

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy.

Nucleic Acids Res 2012 Jan 24;40(Database issue):D130-5. Epub 2011 Nov 24.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1093/nar/gkr1079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245008PMC
January 2012

BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata.

Nucleic Acids Res 2012 Jan 1;40(Database issue):D57-63. Epub 2011 Dec 1.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1093/nar/gkr1163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245069PMC
January 2012

Entrez Gene: gene-centered information at NCBI.

Nucleic Acids Res 2011 Jan 28;39(Database issue):D52-7. Epub 2010 Nov 28.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20852, USA.

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http://dx.doi.org/10.1093/nar/gkq1237DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013746PMC
January 2011

The completion of the Mammalian Gene Collection (MGC).

Authors:
Gary Temple Daniela S Gerhard Rebekah Rasooly Elise A Feingold Peter J Good Cristen Robinson Allison Mandich Jeffrey G Derge Jeanne Lewis Debonny Shoaf Francis S Collins Wonhee Jang Lukas Wagner Carolyn M Shenmen Leonie Misquitta Carl F Schaefer Kenneth H Buetow Tom I Bonner Linda Yankie Ming Ward Lon Phan Alex Astashyn Garth Brown Catherine Farrell Jennifer Hart Melissa Landrum Bonnie L Maidak Michael Murphy Terence Murphy Bhanu Rajput Lillian Riddick David Webb Janet Weber Wendy Wu Kim D Pruitt Donna Maglott Adam Siepel Brona Brejova Mark Diekhans Rachel Harte Robert Baertsch Jim Kent David Haussler Michael Brent Laura Langton Charles L G Comstock Michael Stevens Chaochun Wei Marijke J van Baren Kourosh Salehi-Ashtiani Ryan R Murray Lila Ghamsari Elizabeth Mello Chenwei Lin Christa Pennacchio Kirsten Schreiber Nicole Shapiro Amber Marsh Elizabeth Pardes Troy Moore Anita Lebeau Mike Muratet Blake Simmons David Kloske Stephanie Sieja James Hudson Praveen Sethupathy Michael Brownstein Narayan Bhat Joseph Lazar Howard Jacob Chris E Gruber Mark R Smith John McPherson Angela M Garcia Preethi H Gunaratne Jiaqian Wu Donna Muzny Richard A Gibbs Alice C Young Gerard G Bouffard Robert W Blakesley Jim Mullikin Eric D Green Mark C Dickson Alex C Rodriguez Jane Grimwood Jeremy Schmutz Richard M Myers Martin Hirst Thomas Zeng Kane Tse Michelle Moksa Merinda Deng Kevin Ma Diana Mah Johnson Pang Greg Taylor Eric Chuah Athena Deng Keith Fichter Anne Go Stephanie Lee Jing Wang Malachi Griffith Ryan Morin Richard A Moore Michael Mayo Sarah Munro Susan Wagner Steven J M Jones Robert A Holt Marco A Marra Sun Lu Shuwei Yang James Hartigan Marcus Graf Ralf Wagner Stanley Letovksy Jacqueline C Pulido Keith Robison Dominic Esposito James Hartley Vanessa E Wall Ralph F Hopkins Osamu Ohara Stefan Wiemann

Human immunodeficiency virus type 1, human protein interaction database at NCBI.

Nucleic Acids Res 2009 Jan 15;37(Database issue):D417-22. Epub 2008 Oct 15.

Southern Research Institute, Frederick, MD 21701, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkn708DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686594PMC
January 2009

NCBI Reference Sequences: current status, policy and new initiatives.

Nucleic Acids Res 2009 Jan 16;37(Database issue):D32-6. Epub 2008 Oct 16.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Rm 4As.47B, 45 Center Drive, Bethesda, MD, USA.

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http://dx.doi.org/10.1093/nar/gkn721DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686572PMC
January 2009

Cataloguing the HIV type 1 human protein interaction network.

AIDS Res Hum Retroviruses 2008 Dec;24(12):1497-502

Department of Infectious Disease Research, Southern Research Institute, 431 Aviation Way, Frederick, MD 21701, USA.

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http://dx.doi.org/10.1089/aid.2008.0113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2655106PMC
December 2008

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.

Nucleic Acids Res 2007 Jan 27;35(Database issue):D61-5. Epub 2006 Nov 27.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Rm 6An.12J, 45 Center Drive, Bethesda, MD 20892-6510, USA.

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http://dx.doi.org/10.1093/nar/gkl842DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1716718PMC
January 2007

Entrez Gene: gene-centered information at NCBI.

Nucleic Acids Res 2007 Jan 5;35(Database issue):D26-31. Epub 2006 Dec 5.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892-6510, USA.

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http://dx.doi.org/10.1093/nar/gkl993DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1761442PMC
January 2007

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.

Nucleic Acids Res 2005 Jan;33(Database issue):D501-4

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Rm 6An.12J, 45 Center Drive, Bethesda, MD 20892-6510, USA.

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http://dx.doi.org/10.1093/nar/gki025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC539979PMC
January 2005

Entrez Gene: gene-centered information at NCBI.

Nucleic Acids Res 2005 Jan;33(Database issue):D54-8

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Room 5AS.13B, 45 Center Drive, Bethesda, MD 20892-6510, USA.

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http://dx.doi.org/10.1093/nar/gki031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC539985PMC
January 2005

NCBI Reference Sequence project: update and current status.

Nucleic Acids Res 2003 Jan;31(1):34-7

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A Room 6N605, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165558PMC
http://dx.doi.org/10.1093/nar/gkg111DOI Listing
January 2003

Accessing the human genome.

Curr Protoc Hum Genet 2002 Nov;Chapter 6:Unit 6.9

National Center for Biotechnology Information, NIH, Bethesda, MaryLand, USA.

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http://dx.doi.org/10.1002/0471142905.hg0609s34DOI Listing
November 2002