Kevin McDonnell

Kevin McDonnell

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Kevin McDonnell

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A robust, cost-effective method for DNA, RNA and protein co-extraction from soil, other complex microbiomes and pure cultures.

Mol Ecol Resour 2019 Mar;19(2):439-455

Functional Environmental Microbiology, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland.

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http://dx.doi.org/10.1111/1755-0998.12979DOI Listing
March 2019

Novel Common Genetic Susceptibility Loci for Colorectal Cancer.

Authors:
Stephanie L Schmit Christopher K Edlund Fredrick R Schumacher Jian Gong Tabitha A Harrison Jeroen R Huyghe Chenxu Qu Marilena Melas David J Van Den Berg Hansong Wang Stephanie Tring Sarah J Plummer Demetrius Albanes M Henar Alonso Christopher I Amos Kristen Anton Aaron K Aragaki Volker Arndt Elizabeth L Barry Sonja I Berndt Stéphane Bezieau Stephanie Bien Amanda Bloomer Juergen Boehm Marie-Christine Boutron-Ruault Hermann Brenner Stefanie Brezina Daniel D Buchanan Katja Butterbach Bette J Caan Peter T Campbell Christopher S Carlson Jose E Castelao Andrew T Chan Jenny Chang-Claude Stephen J Chanock Iona Cheng Ya-Wen Cheng Lee Soo Chin James M Church Timothy Church Gerhard A Coetzee Michelle Cotterchio Marcia Cruz Correa Keith R Curtis David Duggan Douglas F Easton Dallas English Edith J M Feskens Rocky Fischer Liesel M FitzGerald Barbara K Fortini Lars G Fritsche Charles S Fuchs Manuela Gago-Dominguez Manish Gala Steven J Gallinger W James Gauderman Graham G Giles Edward L Giovannucci Stephanie M Gogarten Clicerio Gonzalez-Villalpando Elena M Gonzalez-Villalpando William M Grady Joel K Greenson Andrea Gsur Marc Gunter Christopher A Haiman Jochen Hampe Sophia Harlid John F Harju Richard B Hayes Philipp Hofer Michael Hoffmeister John L Hopper Shu-Chen Huang Jose Maria Huerta Thomas J Hudson David J Hunter Gregory E Idos Motoki Iwasaki Rebecca D Jackson Eric J Jacobs Sun Ha Jee Mark A Jenkins Wei-Hua Jia Shuo Jiao Amit D Joshi Laurence N Kolonel Suminori Kono Charles Kooperberg Vittorio Krogh Tilman Kuehn Sébastien Küry Andrea LaCroix Cecelia A Laurie Flavio Lejbkowicz Mathieu Lemire Heinz-Josef Lenz David Levine Christopher I Li Li Li Wolfgang Lieb Yi Lin Noralane M Lindor Yun-Ru Liu Fotios Loupakis Yingchang Lu Frank Luh Jing Ma Christoph Mancao Frank J Manion Sanford D Markowitz Vicente Martin Koichi Matsuda Keitaro Matsuo Kevin J McDonnell Caroline E McNeil Roger Milne Antonio J Molina Bhramar Mukherjee Neil Murphy Polly A Newcomb Kenneth Offit Hanane Omichessan Domenico Palli Jesus P Paredes Cotoré Julyann Pérez-Mayoral Paul D Pharoah John D Potter Conghui Qu Leon Raskin Gad Rennert Hedy S Rennert Bridget M Riggs Clemens Schafmayer Robert E Schoen Thomas A Sellers Daniela Seminara Gianluca Severi Wei Shi David Shibata Xiao-Ou Shu Erin M Siegel Martha L Slattery Melissa Southey Zsofia K Stadler Mariana C Stern Sebastian Stintzing Darin Taverna Stephen N Thibodeau Duncan C Thomas Antonia Trichopoulou Shoichiro Tsugane Cornelia M Ulrich Franzel J B van Duijnhoven Bethany van Guelpan Joseph Vijai Jarmo Virtamo Stephanie J Weinstein Emily White Aung Ko Win Alicja Wolk Michael Woods Anna H Wu Kana Wu Yong-Bing Xiang Yun Yen Brent W Zanke Yi-Xin Zeng Ben Zhang Niha Zubair Sun-Seog Kweon Jane C Figueiredo Wei Zheng Loic Le Marchand Annika Lindblom Victor Moreno Ulrike Peters Graham Casey Li Hsu David V Conti Stephen B Gruber

J Natl Cancer Inst 2019 Feb;111(2):146-157

Department of Preventive Medicine, USC Norris Comprehensive Cancer Center.

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http://dx.doi.org/10.1093/jnci/djy099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6555904PMC
February 2019

Evaluation of the effectiveness of kINPen Med plasma jet and bioactive agent therapy in a rat model of wound healing.

Biointerphases 2018 10 16;13(5):051002. Epub 2018 Oct 16.

School of Mechanical and Materials Engineering, University College Dublin, Belfield, Dublin 4, Ireland.

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http://dx.doi.org/10.1116/1.5046489DOI Listing
October 2018

Development of a bacterial propionate-biosensor for anaerobic digestion monitoring.

Enzyme Microb Technol 2018 Feb 25;109:51-57. Epub 2017 Sep 25.

UCD School of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, Ireland.

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http://dx.doi.org/10.1016/j.enzmictec.2017.09.011DOI Listing
February 2018

In- and IRDye800CW-Labeled PLA-PEG Nanoparticle for Imaging Prostate-Specific Membrane Antigen-Expressing Tissues.

Biomacromolecules 2017 01 21;18(1):201-209. Epub 2016 Dec 21.

Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins Medical Institutions , Baltimore, Maryland 21287, United States.

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http://pubs.acs.org/doi/10.1021/acs.biomac.6b01485
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http://dx.doi.org/10.1021/acs.biomac.6b01485DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5516902PMC
January 2017

Increased yield of actionable mutations using multi-gene panels to assess hereditary cancer susceptibility in an ethnically diverse clinical cohort.

Cancer Genet 2016 Apr 12;209(4):130-7. Epub 2016 Jan 12.

USC Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA 90033, USA; Department of Medicine, University of Southern California, Los Angeles, CA 90033, USA; Department of Preventive Medicine, University of Southern California, Los Angeles, CA 90033, USA.

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http://dx.doi.org/10.1016/j.cancergen.2015.12.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4835267PMC
April 2016

A novel BAP1 mutation is associated with melanocytic neoplasms and thyroid cancer.

Cancer Genet 2016 Mar 22;209(3):75-81. Epub 2015 Dec 22.

USC Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cancergen.2015.12.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6447287PMC
March 2016

A Cross-Cancer Genetic Association Analysis of the DNA Repair and DNA Damage Signaling Pathways for Lung, Ovary, Prostate, Breast, and Colorectal Cancer.

Cancer Epidemiol Biomarkers Prev 2016 Jan 4;25(1):193-200. Epub 2015 Dec 4.

Department of Community and Family Medicine, Duke University Medical Center, Durham, North Carolina. Cancer Prevention, Detection, and Control Research Program, Duke Cancer Institute, Durham, North Carolina. Department of Public Health Sciences, University of Virginia, Charlottesville, Virginia.

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http://cebp.aacrjournals.org/content/25/1/193.full.pdf
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http://cebp.aacrjournals.org/cgi/doi/10.1158/1055-9965.EPI-1
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http://dx.doi.org/10.1158/1055-9965.EPI-15-0649DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4713268PMC
January 2016

Towards an effective biosensor for monitoring AD leachate: a knockout E. coli mutant that cannot catabolise lactate.

Appl Microbiol Biotechnol 2015 Dec 15;99(23):10209-14. Epub 2015 Aug 15.

UCD Schools of Biosystems Engineering, Food and Agriculture, University College Dublin, Belfield, Dublin 4, Ireland.

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http://link.springer.com/10.1007/s00253-015-6887-4
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http://dx.doi.org/10.1007/s00253-015-6887-4DOI Listing
December 2015

Corrigendum: genome-wide association study of colorectal cancer identifies six new susceptibility loci.

Authors:
Fredrick R Schumacher Stephanie L Schmit Shuo Jiao Christopher K Edlund Hansong Wang Ben Zhang Li Hsu Shu-Chen Huang Christopher P Fischer John F Harju Gregory E Idos Flavio Lejbkowicz Frank J Manion Kevin McDonnell Caroline E McNeil Marilena Melas Hedy S Rennert Wei Shi Duncan C Thomas David J Van Den Berg Carolyn M Hutter Aaron K Aragaki Katja Butterbach Bette J Caan Christopher S Carlson Stephen J Chanock Keith R Curtis Charles S Fuchs Manish Gala Edward L Giovannucci Stephanie M Gogarten Richard B Hayes Brian Henderson David J Hunter Rebecca D Jackson Laurence N Kolonel Charles Kooperberg Sébastien Küry Andrea LaCroix Cathy C Laurie Cecelia A Laurie Mathieu Lemire David Levine Jing Ma Karen W Makar Conghui Qu Darin Taverna Cornelia M Ulrich Kana Wu Suminori Kono Dee W West Sonja I Berndt Stephane Bezieau Hermann Brenner Peter T Campbell Andrew T Chan Jenny Chang-Claude Gerhard A Coetzee David V Conti David Duggan Jane C Figueiredo Barbara K Fortini Steven J Gallinger W James Gauderman Graham Giles Roger Green Robert Haile Tabitha A Harrison Michael Hoffmeister John L Hopper Thomas J Hudson Eric Jacobs Motoki Iwasaki Sun Ha Jee Mark Jenkins Wei-Hua Jia Amit Joshi Li Li Noralene M Lindor Keitaro Matsuo Victor Moreno Bhramar Mukherjee Polly A Newcomb John D Potter Leon Raskin Gad Rennert Stephanie Rosse Gianluca Severi Robert E Schoen Daniela Seminara Xiao-Ou Shu Martha L Slattery Shoichiro Tsugane Emily White Yong-Bing Xiang Brent W Zanke Wei Zheng Loic Le Marchand Graham Casey Stephen B Gruber Ulrike Peters

Nat Commun 2015 Oct 26;6:8739. Epub 2015 Oct 26.

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http://dx.doi.org/10.1038/ncomms9739DOI Listing
October 2015

Circulating TGF-β1-Regulated miRNAs and the Risk of Rapid Progression to ESRD in Type 1 Diabetes.

Diabetes 2015 Sep 30;64(9):3285-93. Epub 2015 Apr 30.

Section on Genetics and Epidemiology, Research Division, Joslin Diabetes Center, Boston, MA Department of Medicine, Harvard Medical School, Boston, MA

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http://dx.doi.org/10.2337/db15-0116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542435PMC
September 2015

Genome-wide association study of colorectal cancer identifies six new susceptibility loci.

Authors:
Fredrick R Schumacher Stephanie L Schmit Shuo Jiao Christopher K Edlund Hansong Wang Ben Zhang Li Hsu Shu-Chen Huang Christopher P Fischer John F Harju Gregory E Idos Flavio Lejbkowicz Frank J Manion Kevin McDonnell Caroline E McNeil Marilena Melas Hedy S Rennert Wei Shi Duncan C Thomas David J Van Den Berg Carolyn M Hutter Aaron K Aragaki Katja Butterbach Bette J Caan Christopher S Carlson Stephen J Chanock Keith R Curtis Charles S Fuchs Manish Gala Edward L Giovannucci Stephanie M Gogarten Richard B Hayes Brian Henderson David J Hunter Rebecca D Jackson Laurence N Kolonel Charles Kooperberg Sébastien Küry Andrea LaCroix Cathy C Laurie Cecelia A Laurie Mathieu Lemire David Levine Jing Ma Karen W Makar Conghui Qu Darin Taverna Cornelia M Ulrich Kana Wu Suminori Kono Dee W West Sonja I Berndt Stéphane Bezieau Hermann Brenner Peter T Campbell Andrew T Chan Jenny Chang-Claude Gerhard A Coetzee David V Conti David Duggan Jane C Figueiredo Barbara K Fortini Steven J Gallinger W James Gauderman Graham Giles Roger Green Robert Haile Tabitha A Harrison Michael Hoffmeister John L Hopper Thomas J Hudson Eric Jacobs Motoki Iwasaki Sun Ha Jee Mark Jenkins Wei-Hua Jia Amit Joshi Li Li Noralene M Lindor Keitaro Matsuo Victor Moreno Bhramar Mukherjee Polly A Newcomb John D Potter Leon Raskin Gad Rennert Stephanie Rosse Gianluca Severi Robert E Schoen Daniela Seminara Xiao-Ou Shu Martha L Slattery Shoichiro Tsugane Emily White Yong-Bing Xiang Brent W Zanke Wei Zheng Loic Le Marchand Graham Casey Stephen B Gruber Ulrike Peters

Nat Commun 2015 Jul 7;6:7138. Epub 2015 Jul 7.

Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98124, USA.

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http://dx.doi.org/10.1038/ncomms8138DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4967357PMC
July 2015

Evaluation of the sensitivity of bacterial and yeast cells to cold atmospheric plasma jet treatments.

Biointerphases 2015 Jun 7;10(2):029507. Epub 2015 Jun 7.

School of Mechanical and Materials Engineering, University College Dublin, Belfield Dublin 4, Ireland.

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http://dx.doi.org/10.1116/1.4916928DOI Listing
June 2015

Carbon dioxide utilisation of Dunaliella tertiolecta for carbon bio-mitigation in a semicontinuous photobioreactor.

Appl Microbiol Biotechnol 2014 Apr 27;98(7):3157-64. Epub 2013 Oct 27.

School of Biosystems Engineering, University College Dublin, Room 3.25, Agriculture and Food Science Centre, Belfield, Dublin 4, Ireland,

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http://dx.doi.org/10.1007/s00253-013-5322-yDOI Listing
April 2014

Microbial community in the soil determines the forest recovery post-exposure to gamma irradiation.

Environ Sci Technol 2013 Oct 25;47(20):11396-402. Epub 2013 Sep 25.

Department of Biology, Dowling College , 150 Idle Hour Boulevard, Oakdale, New York 11769, United States.

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http://pubs.acs.org/doi/10.1021/es400923k
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http://dx.doi.org/10.1021/es400923kDOI Listing
October 2013

Characterisation of spruce, salix, miscanthus and wheat straw for pyrolysis applications.

Bioresour Technol 2013 Mar 13;131:202-9. Epub 2012 Dec 13.

Bioresources Research Centre, Biosystems Engineering, UCD School of Biosystems, Belfield, Dublin 4, Ireland.

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http://dx.doi.org/10.1016/j.biortech.2012.12.013DOI Listing
March 2013

Suppression of miRNA-708 by polycomb group promotes metastases by calcium-induced cell migration.

Cancer Cell 2013 Jan;23(1):63-76

Department of Cardiothoracic Surgery, Weill Cornell Medical College of Cornell University, New York, NY 10065, USA.

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http://dx.doi.org/10.1016/j.ccr.2012.11.019DOI Listing
January 2013

Atrial natriuretic peptide-Fc, ANP-Fc, fusion proteins: semisynthesis, in vitro activity and pharmacokinetics in rats.

Bioconjug Chem 2012 Mar 14;23(3):518-26. Epub 2012 Feb 14.

Biogen Idec Hemophilia, 9 Fourth Avenue, Waltham, Massachusetts 02451, USA.

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http://dx.doi.org/10.1021/bc200592cDOI Listing
March 2012

Prediction of moisture, calorific value, ash and carbon content of two dedicated bioenergy crops using near-infrared spectroscopy.

Bioresour Technol 2011 Apr 24;102(8):5200-6. Epub 2011 Feb 24.

Biosystems Engineering, Bioresources Research Centre, School of Agriculture, Food Science and Veterinary Medicine, University College Dublin, Belfield, Dublin 4, Ireland.

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http://dx.doi.org/10.1016/j.biortech.2011.01.087DOI Listing
April 2011

Discovery of novel human breast cancer microRNAs from deep sequencing data by analysis of pri-microRNA secondary structures.

PLoS One 2011 Feb 8;6(2):e16403. Epub 2011 Feb 8.

Department of Cardiothoracic Surgery, Weill Cornell Medical College of Cornell University, New York, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0016403PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035615PMC
February 2011

Pack-years of cigarette smoking as a prognostic factor in patients with stage IIIB/IV nonsmall cell lung cancer.

Cancer 2010 Feb;116(3):670-5

Thoracic Oncology Service, Division of Solid Tumor Oncology, Department of Medicine, Memorial Sloan-Kettering Cancer Center, Weill Medical College of Cornell University, New York, New York 10021, USA.

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http://doi.wiley.com/10.1002/cncr.24813
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http://dx.doi.org/10.1002/cncr.24813DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2815173PMC
February 2010

Synthesis and structure-activity relationships of dimeric peptide antagonists of the human immunoglobulin G-human neonatal Fc receptor (IgG-FcRn) interaction.

J Med Chem 2010 Feb;53(4):1587-96

Syntonix Pharmaceuticals, Inc., a Subsidiary of Biogen Idec, 9 Fourth Avenue, Waltham, Massachusetts 02451, USA.

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http://dx.doi.org/10.1021/jm901128zDOI Listing
February 2010

Bone marrow-derived endothelial progenitor cells contribute to the angiogenic switch in tumor growth and metastatic progression.

Biochim Biophys Acta 2009 Aug 19;1796(1):33-40. Epub 2009 May 19.

Department of Cardiothoracic Surgery, Lehman Brothers Lung Cancer Research Center, Cornell University Medical Center, New York, NY 10065, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S0304419X0900028
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http://dx.doi.org/10.1016/j.bbcan.2009.05.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3649840PMC
August 2009

A distinct role for secreted fibroblast growth factor-binding proteins in development.

Proc Natl Acad Sci U S A 2009 May 11;106(21):8585-90. Epub 2009 May 11.

Lombardi Cancer Center, Georgetown University, Washington, DC 20057, USA.

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http://dx.doi.org/10.1073/pnas.0810952106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2689014PMC
May 2009

Color design for illustrative visualization.

IEEE Trans Vis Comput Graph 2008 Nov-Dec;14(6):1739-46

Center for Visual Computing, Stony Brook University.

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http://dx.doi.org/10.1109/TVCG.2008.118DOI Listing
December 2008

Structure-activity relationships of a peptide inhibitor of the human FcRn:human IgG interaction.

Bioorg Med Chem 2008 Jun 6;16(12):6394-405. Epub 2008 May 6.

Syntonix Pharmaceuticals, Inc., 9 Fourth Avenue, Waltham, MA 02451, USA.

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http://dx.doi.org/10.1016/j.bmc.2008.05.004DOI Listing
June 2008

Endothelial progenitor cells control the angiogenic switch in mouse lung metastasis.

Science 2008 Jan;319(5860):195-8

Cancer Genome Research Center, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.

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http://dx.doi.org/10.1126/science.1150224DOI Listing
January 2008

Dispersion modelling and measurement of emissions from the co-combustion of meat and bone meal with peat in a fluidised bed.

Bioresour Technol 2006 May 14;97(7):903-13. Epub 2005 Jun 14.

Department of Biosystems Engineering, University College Dublin, Earlsfort Terrace, Dublin 2, Ireland.

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http://linkinghub.elsevier.com/retrieve/pii/S096085240500234
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http://dx.doi.org/10.1016/j.biortech.2005.04.027DOI Listing
May 2006

Identification of the fibroblast growth factor (FGF)-interacting domain in a secreted FGF-binding protein by phage display.

J Biol Chem 2006 Jan 27;281(2):1137-44. Epub 2005 Oct 27.

Lombardi Comprehensive Cancer Center, Georgetown University, Washington, DC 20057, USA.

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http://dx.doi.org/10.1074/jbc.M510754200DOI Listing
January 2006

Vascular leakage in chick embryos after expression of a secreted binding protein for fibroblast growth factors.

Lab Invest 2005 Jun;85(6):747-55

Lombardi Cancer Center, Georgetown University, Washington, DC 20057, USA.

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http://dx.doi.org/10.1038/labinvest.3700269DOI Listing
June 2005

Overexpression of an N-terminally truncated isoform of the nuclear receptor coactivator amplified in breast cancer 1 leads to altered proliferation of mammary epithelial cells in transgenic mice.

Mol Endocrinol 2005 Mar 18;19(3):644-56. Epub 2004 Nov 18.

Department of Oncology, Lombardi Cancer Center, Georgetown University, Research Building, Room E307, 3970 Reservoir Road, Washington, D.C. 20057, USA.

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http://dx.doi.org/10.1210/me.2004-0106DOI Listing
March 2005

Central control of renal sodium-phosphate (NaPi-2) transporters.

Am J Physiol Renal Physiol 2004 Apr 25;286(4):F647-52. Epub 2003 Nov 25.

Department of Physiology and Biophysics, Georgetown University School of Medicine, Washington, D.C. 20057, USA.

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http://dx.doi.org/10.1152/ajprenal.00354.2002DOI Listing
April 2004

Peptide T bolus normalizes the growth hormone secretion pattern in two children with AIDS.

Peptides 2002 Dec;23(12):2279-81

Department of Physiology and Biophysics, Georgetown University School of Medicine-Basic Science Building, Room 205, Box 571460, Washington, DC 20057-1421, USA.

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http://dx.doi.org/10.1016/s0196-9781(02)00268-1DOI Listing
December 2002

Pleiotrophin signaling through anaplastic lymphoma kinase is rate-limiting for glioblastoma growth.

J Biol Chem 2002 Apr 23;277(16):14153-8. Epub 2002 Jan 23.

Lombardi Cancer Center, Department of Oncology, Georgetown University, Washington, DC, 20007, USA.

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http://dx.doi.org/10.1074/jbc.M112354200DOI Listing
April 2002

Oligomeric beta(beta)(alpha) miniprotein motifs: pivotal role of single hinge residue in determining the oligomeric state.

J Am Chem Soc 2002 Jan;124(3):428-33

Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.

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http://dx.doi.org/10.1021/ja016991dDOI Listing
January 2002

Termination of care of newborn infants.

Semin Neurol 1984 Mar;4(1):30-5

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http://dx.doi.org/10.1055/s-2008-1041529DOI Listing
March 1984