Kevin J Peterson

Kevin J Peterson

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Kevin J Peterson

Publications by authors named "Kevin J Peterson"

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Mining Hierarchies and Similarity Clusters from Value Set Repositories.

AMIA Annu Symp Proc 2017 16;2017:1372-1381. Epub 2018 Apr 16.

Department of Health Sciences Research, Mayo Clinic, Rochester, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5977603PMC
April 2019

The Sublanguage of Clinical Problem Lists: A Corpus Analysis.

AMIA Annu Symp Proc 2018 5;2018:1451-1460. Epub 2018 Dec 5.

Department of Health Sciences Research, Mayo Clinic, Rochester, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6371258PMC
December 2018

Unicellular Origin of the Animal MicroRNA Machinery.

Curr Biol 2018 10 11;28(20):3288-3295.e5. Epub 2018 Oct 11.

Centre for Epigenetics, Development and Evolution (CEDE) and Centre for Integrative Microbial Evolution (CIME), Section for Genetics and Evolutionary Biology (EVOGENE), University of Oslo, Oslo, Norway. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S09609822183106
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http://dx.doi.org/10.1016/j.cub.2018.08.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6206976PMC
October 2018

Evolution of metazoan morphological disparity.

Proc Natl Acad Sci U S A 2018 09 4;115(38):E8909-E8918. Epub 2018 Sep 4.

School of Earth Sciences, University of Bristol, BS8 1TQ Bristol, United Kingdom;

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http://dx.doi.org/10.1073/pnas.1810575115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6156614PMC
September 2018

Well-Annotated microRNAomes Do Not Evidence Pervasive miRNA Loss.

Genome Biol Evol 2018 06;10(6):1457-1470

School of Earth Sciences and School of Biological Sciences, University of Bristol, United Kingdom.

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http://dx.doi.org/10.1093/gbe/evy096DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007596PMC
June 2018

Big Strides in Cellular MicroRNA Expression.

Trends Genet 2018 03 18;34(3):165-167. Epub 2018 Jan 18.

Department of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, NY 14642, USA.

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http://dx.doi.org/10.1016/j.tig.2017.12.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5834366PMC
March 2018

Leveraging Terminology Services for Extract-Transform-Load Processes: A User-Centered Approach.

AMIA Annu Symp Proc 2016 10;2016:1010-1019. Epub 2017 Feb 10.

Department of Health Sciences Research, Mayo Clinic, Rochester, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333225PMC
August 2017

The Antagonistic Gene Paralogs Upf3a and Upf3b Govern Nonsense-Mediated RNA Decay.

Cell 2016 Apr 31;165(2):382-95. Epub 2016 Mar 31.

Department of Reproductive Medicine, School of Medicine, University of California San Diego, La Jolla, CA 92103, USA; Institute of Genomic Medicine, University of California, San Diego, La Jolla, CA 92103, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2016.02.046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4826573PMC
April 2016

The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference.

Genome Biol Evol 2016 Jan 5;8(2):330-44. Epub 2016 Jan 5.

School of Earth Sciences, University of Bristol, United Kingdom School of Biological Sciences, University of Bristol, United Kingdom

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http://dx.doi.org/10.1093/gbe/evv261DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4779606PMC
January 2016

Scalable and High-Throughput Execution of Clinical Quality Measures from Electronic Health Records using MapReduce and the JBoss® Drools Engine.

AMIA Annu Symp Proc 2014 14;2014:1864-73. Epub 2014 Nov 14.

Dept. of Health Sciences Research, Mayo Clinic, Rochester, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419873PMC
September 2015

Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles.

Evol Dev 2014 Jul-Aug;16(4):189-96. Epub 2014 May 5.

Department of Geology and Geophysics, Yale University, 210 Whitney Avenue, New Haven, CT, 06511, USA; Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, 20560, USA.

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http://dx.doi.org/10.1111/ede.12081DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4215941PMC
December 2014

miRNAs: small genes with big potential in metazoan phylogenetics.

Mol Biol Evol 2013 Nov 2;30(11):2369-82. Epub 2013 Aug 2.

Department of Biological Sciences, Dartmouth College, Hanover, NH.

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http://dx.doi.org/10.1093/molbev/mst133DOI Listing
November 2013

MicroRNAs support the monophyly of enteropneust hemichordates.

J Exp Zool B Mol Dev Evol 2013 Sep 23;320(6):368-74. Epub 2013 May 23.

Department of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA.

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http://dx.doi.org/10.1002/jez.b.22510DOI Listing
September 2013

The identification of microRNAs in calcisponges: independent evolution of microRNAs in basal metazoans.

J Exp Zool B Mol Dev Evol 2013 Mar 24;320(2):84-93. Epub 2013 Jan 24.

Department of Biological Sciences, Dartmouth College, Hanover, New Hampshire 03755, USA.

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http://dx.doi.org/10.1002/jez.b.22485DOI Listing
March 2013

Do miRNAs have a deep evolutionary history?

Bioessays 2012 Oct 30;34(10):857-66. Epub 2012 Jul 30.

School of Earth Sciences, University of Bristol, Bristol, UK.

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http://dx.doi.org/10.1002/bies.201200055DOI Listing
October 2012

A molecular palaeobiological hypothesis for the origin of aplacophoran molluscs and their derivation from chiton-like ancestors.

Proc Biol Sci 2012 Apr 5;279(1732):1259-68. Epub 2011 Oct 5.

Department of Geology and Geophysics, Yale University, PO Box 208109, New Haven, CT 06520-8109, USA.

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http://dx.doi.org/10.1098/rspb.2011.1773DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3282371PMC
April 2012

CD2AP regulates SUMOylation of CIN85 in podocytes.

Mol Cell Biol 2012 Mar 27;32(6):1068-79. Epub 2011 Dec 27.

Hannover Medical School, Department of Nephrology, Hannover, Germany.

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http://dx.doi.org/10.1128/MCB.06106-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3295011PMC
March 2012

MicroRNAs support a turtle + lizard clade.

Biol Lett 2012 Feb 20;8(1):104-7. Epub 2011 Jul 20.

Department of Geology and Geophysics, Yale University, New Haven, CT 06511, USA.

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http://dx.doi.org/10.1098/rsbl.2011.0477DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3259949PMC
February 2012

Resolving phylogenetic signal from noise when divergence is rapid: a new look at the old problem of echinoderm class relationships.

Mol Phylogenet Evol 2012 Jan 14;62(1):27-34. Epub 2011 Sep 14.

The National University of Ireland, Maynooth, Co. Kildare, Ireland.

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http://dx.doi.org/10.1016/j.ympev.2011.08.028DOI Listing
January 2012

The Cambrian conundrum: early divergence and later ecological success in the early history of animals.

Science 2011 Nov;334(6059):1091-7

Department of Paleobiology, National Museum of Natural History, Washington, DC 20013-7012, USA.

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http://dx.doi.org/10.1126/science.1206375DOI Listing
November 2011

Molecular paleobiological insights into the origin of the Brachiopoda.

Evol Dev 2011 May-Jun;13(3):290-303

Department of Geology and Geophysics, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1111/j.1525-142X.2011.00480.xDOI Listing
August 2011

microRNA complements in deuterostomes: origin and evolution of microRNAs.

Evol Dev 2011 Jan-Feb;13(1):15-27

Institut de Génomique Fonctionnelle de Lyon (UCBL, CNRS UMR5242, ENS, INRA 1288), Ecole Normale Supérieure de Lyon, 46 allée d'Italie, 69364 Lyon CEDEX 07, France.

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http://dx.doi.org/10.1111/j.1525-142X.2010.00452.xDOI Listing
April 2011

Acoelomorph flatworms are deuterostomes related to Xenoturbella.

Nature 2011 Feb;470(7333):255-8

Centre Robert-Cedergren, Département de Biochimie, Université de Montréal, Succursale Centre-Ville, Montréal, Québec H3C 3J7, Canada.

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http://dx.doi.org/10.1038/nature09676DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4025995PMC
February 2011

microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate.

Proc Natl Acad Sci U S A 2010 Nov 19;107(45):19379-83. Epub 2010 Oct 19.

Department of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA.

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http://dx.doi.org/10.1073/pnas.1010350107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2984222PMC
November 2010

The dynamic genome of Hydra.

Nature 2010 Mar 14;464(7288):592-6. Epub 2010 Mar 14.

US Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA.

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http://dx.doi.org/10.1038/nature08830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479502PMC
March 2010

MicroRNAs resolve an apparent conflict between annelid systematics and their fossil record.

Proc Biol Sci 2009 Dec 15;276(1677):4315-22. Epub 2009 Sep 15.

Department of Geology and Geophysics, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1098/rspb.2009.1340DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2817109PMC
December 2009

Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa.

Mol Biol Evol 2009 Oct 13;26(10):2261-74. Epub 2009 Jul 13.

Department of Geology and Geophysics, Yale University, New Haven, CT, USA.

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http://dx.doi.org/10.1093/molbev/msp148DOI Listing
October 2009

MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion.

Bioessays 2009 Jul;31(7):736-47

Department of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA.

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http://dx.doi.org/10.1002/bies.200900033DOI Listing
July 2009

The deep evolution of metazoan microRNAs.

Evol Dev 2009 Jan-Feb;11(1):50-68

Department of Computer Science, North Carolina State University, Raleigh, NC 27695, USA.

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http://dx.doi.org/10.1111/j.1525-142X.2008.00302.xDOI Listing
June 2009

Representing the ClaML-based ICD10 in LexGrid terminology model.

AMIA Annu Symp Proc 2008 Nov 6:992. Epub 2008 Nov 6.

Division of Biomedical Informatics, Mayo Clinic College of Medicine, Rochester, MN, USA.

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November 2008

The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records.

Philos Trans R Soc Lond B Biol Sci 2008 Apr;363(1496):1435-43

Department of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA.

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http://rstb.royalsocietypublishing.org/cgi/doi/10.1098/rstb.
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http://dx.doi.org/10.1098/rstb.2007.2233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2614224PMC
April 2008

MicroRNAs and the advent of vertebrate morphological complexity.

Proc Natl Acad Sci U S A 2008 Feb 14;105(8):2946-50. Epub 2008 Feb 14.

Department of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA.

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http://dx.doi.org/10.1073/pnas.0712259105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2268565PMC
February 2008

Poriferan ANTP genes: primitively simple or secondarily reduced?

Evol Dev 2007 Sep-Oct;9(5):405-8

Department of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA.

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http://dx.doi.org/10.1111/j.1525-142X.2007.00179.xDOI Listing
December 2007

Phylogenetic distribution of microRNAs supports the basal position of acoel flatworms and the polyphyly of Platyhelminthes.

Evol Dev 2007 Sep-Oct;9(5):409-15

Department of Biochemistry, Dartmouth Medical School, Hanover, NH 03755, USA.

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http://dx.doi.org/10.1111/j.1525-142X.2007.00180.xDOI Listing
December 2007

The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint.

J Exp Zool B Mol Dev Evol 2006 Nov;306(6):575-88

Department of Biochemistry, Dartmouth Medical School, Hanover, NH 03755, USA.

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http://dx.doi.org/10.1002/jez.b.21118DOI Listing
November 2006

Paleogenomics of echinoderms.

Science 2006 Nov;314(5801):956-60

Department of Earth Sciences, University of Southern California, Los Angeles, CA 90089-0740, USA.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1132310
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http://dx.doi.org/10.1126/science.1132310DOI Listing
November 2006

Unusual gene order and organization of the sea urchin hox cluster.

J Exp Zool B Mol Dev Evol 2006 Jan;306(1):45-58

Division of Biology and the Beckman Institute, California Institute of Technology, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1002/jez.b.21070DOI Listing
January 2006

Origin of the Eumetazoa: testing ecological predictions of molecular clocks against the Proterozoic fossil record.

Proc Natl Acad Sci U S A 2005 Jul 27;102(27):9547-52. Epub 2005 Jun 27.

Department of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0503660102
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http://dx.doi.org/10.1073/pnas.0503660102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1172262PMC
July 2005

Phylogenetic analysis of the formin homology 2 domain.

Mol Biol Cell 2005 Jan 27;16(1):1-13. Epub 2004 Oct 27.

Department of Biochemistry, Dartmouth Medical School, Hanover, NH 03755, USA.

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http://dx.doi.org/10.1091/mbc.e04-07-0565DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC539145PMC
January 2005

Isolation of Hox and Parahox genes in the hemichordate Ptychodera flava and the evolution of deuterostome Hox genes.

Authors:
Kevin J Peterson

Mol Phylogenet Evol 2004 Jun;31(3):1208-15

Department of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S105579030300390
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http://dx.doi.org/10.1016/j.ympev.2003.10.007DOI Listing
June 2004

Estimating metazoan divergence times with a molecular clock.

Proc Natl Acad Sci U S A 2004 Apr 14;101(17):6536-41. Epub 2004 Apr 14.

Department of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0401670101
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http://dx.doi.org/10.1073/pnas.0401670101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC404080PMC
April 2004

Spdeadringer, a sea urchin embryo gene required separately in skeletogenic and oral ectoderm gene regulatory networks.

Dev Biol 2003 Sep;261(1):55-81

Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1016/s0012-1606(03)00278-1DOI Listing
September 2003

Testing putative hemichordate homologues of the chordate dorsal nervous system and endostyle: expression of NK2.1 (TTF-1) in the acorn worm Ptychodera flava (Hemichordata, Ptychoderidae).

Evol Dev 2002 Nov-Dec;4(6):405-17

Department of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA.

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May 2003

A fungal analog for newfoundland ediacaran fossils?

Integr Comp Biol 2003 Feb;43(1):127-36

Department of Biological Sciences, Dartmouth College, Hanover, New Hampshire 03755 USA.

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http://dx.doi.org/10.1093/icb/43.1.127DOI Listing
February 2003