Kevin D Dorfman

Kevin D Dorfman

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Kevin D Dorfman

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Extension distribution for DNA confined in a nanochannel near the Odijk regime.

J Chem Phys 2019 Sep;151(11):114903

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.5121305DOI Listing
September 2019

Hydrophobic catalysis and a potential biological role of DNA unstacking induced by environment effects.

Proc Natl Acad Sci U S A 2019 Aug 14;116(35):17169-17174. Epub 2019 Aug 14.

Department of Chemistry and Chemical Engineering, Chalmers University of Technology, 412 96 Gothenburg, Sweden;

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http://dx.doi.org/10.1073/pnas.1909122116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6717297PMC
August 2019

Influence of charge sequence on the adsorption of polyelectrolytes to oppositely-charged polyelectrolyte brushes.

Soft Matter 2019 Jul;15(27):5431-5442

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave. SE, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1039/c9sm00581aDOI Listing
July 2019

Simulations corroborate telegraph model predictions for the extension distributions of nanochannel confined DNA.

Biomicrofluidics 2019 Jul 8;13(4):044110. Epub 2019 Aug 8.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.5109566DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6687496PMC
July 2019

Erratum: "Measuring the wall depletion length of nanoconfined DNA" [J. Chem. Phys. 149, 104901 (2018)].

J Chem Phys 2019 06;150(21):219901

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.5108718DOI Listing
June 2019

Microfluidic long DNA sample preparation from cells.

Lab Chip 2019 01;19(2):281-290

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave. SE, Minneapolis, MN 55455, USA.

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http://xlink.rsc.org/?DOI=C8LC01163J
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http://dx.doi.org/10.1039/c8lc01163jDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6423959PMC
January 2019

Role of Chain Length in the Formation of Frank-Kasper Phases in Diblock Copolymers.

Phys Rev Lett 2018 Nov;121(20):208002

Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1103/PhysRevLett.121.208002DOI Listing
November 2018

Alpha-Synuclein Modulates the Physical Properties of DNA.

Chemistry 2018 Oct 19;24(58):15685-15690. Epub 2018 Sep 19.

Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.

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http://dx.doi.org/10.1002/chem.201803933DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6217799PMC
October 2018

Stable Frank-Kasper phases of self-assembled, soft matter spheres.

Proc Natl Acad Sci U S A 2018 10 24;115(41):10233-10238. Epub 2018 Sep 24.

Department of Polymer Science and Engineering, University of Massachusetts, Amherst, MA 01003;

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http://dx.doi.org/10.1073/pnas.1809655115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6187128PMC
October 2018

Subdiffusion of loci and cytoplasmic particles are different in compressed cells.

Commun Biol 2018 24;1:176. Epub 2018 Oct 24.

1Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave SE, Minneapolis, MN 55455 USA.

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http://www.nature.com/articles/s42003-018-0185-5
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http://dx.doi.org/10.1038/s42003-018-0185-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6200837PMC
October 2018

Measuring the wall depletion length of nanoconfined DNA.

J Chem Phys 2018 Sep;149(10):104901

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.5040458DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6135644PMC
September 2018

Entropic trap purification of long DNA.

Lab Chip 2018 03;18(6):955-964

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave. SE, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1039/c7lc01355hDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5849573PMC
March 2018

Interfacial Charge Contributions to Chemical Sensing by Electrolyte-Gated Transistors with Floating Gates.

J Phys Chem Lett 2018 Mar 6;9(6):1335-1339. Epub 2018 Mar 6.

Department of Chemical Engineering and Materials Science , University of Minnesota , 421 Washington Ave. SE , Minneapolis , Minnesota 55455 , United States.

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http://dx.doi.org/10.1021/acs.jpclett.8b00285DOI Listing
March 2018

Evaluation of Blob Theory for the Diffusion of DNA in Nanochannels.

Macromolecules 2018 Mar 20;51(5):1748-1755. Epub 2018 Feb 20.

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1021/acs.macromol.7b02270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5868977PMC
March 2018

The Statistical Segment Length of DNA: Opportunities for Biomechanical Modeling in Polymer Physics and Next-Generation Genomics.

Authors:
Kevin D Dorfman

J Biomech Eng 2018 02;140(2)

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave SE, Minneapolis, MN 55455 e-mail: .

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http://biomechanical.asmedigitalcollection.asme.org/article.
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http://dx.doi.org/10.1115/1.4037790DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5816256PMC
February 2018

Detection and Sourcing of Gluten in Grain with Multiple Floating-Gate Transistor Biosensors.

ACS Sens 2018 02 7;3(2):395-402. Epub 2018 Feb 7.

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities , 421 Washington Avenue SE, Minneapolis, Minnesota 55455, United States.

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http://dx.doi.org/10.1021/acssensors.7b00810DOI Listing
February 2018

Odijk excluded volume interactions during the unfolding of DNA confined in a nanochannel.

Macromolecules 2018 Feb 24;51(3):1172-1180. Epub 2018 Jan 24.

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1021/acs.macromol.7b02466DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5823525PMC
February 2018

Evidence for the extended de Gennes regime of a semiflexible polymer in slit confinement.

Phys Rev E 2018 Feb 8;97(2). Epub 2018 Feb 8.

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, USA.

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https://link.aps.org/doi/10.1103/PhysRevE.97.022502
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http://dx.doi.org/10.1103/PhysRevE.97.022502DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5823612PMC
February 2018

Origins of low-symmetry phases in asymmetric diblock copolymer melts.

Proc Natl Acad Sci U S A 2018 01 18;115(5):847-854. Epub 2018 Jan 18.

Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN 55455;

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http://dx.doi.org/10.1073/pnas.1717850115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798371PMC
January 2018

Sequence-Dependent Persistence Length of Long DNA.

Phys Rev Lett 2017 Dec 29;119(22):227802. Epub 2017 Nov 29.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1103/PhysRevLett.119.227802DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5839665PMC
December 2017

Shear-banding and superdiffusivity in entangled polymer solutions.

Phys Rev E 2017 Dec 21;96(6-1):062503. Epub 2017 Dec 21.

Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, Minnesota 55455, USA.

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https://link.aps.org/doi/10.1103/PhysRevE.96.062503
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http://dx.doi.org/10.1103/PhysRevE.96.062503DOI Listing
December 2017

Erratum: "Distribution of distances between DNA barcode labels in nanochannels close to the persistence length" [J. Chem. Phys. 142, 064902 (2015)].

J Chem Phys 2017 07;147(2):029901

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://aip.scitation.org/doi/10.1063/1.4993458
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http://dx.doi.org/10.1063/1.4993458DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5507705PMC
July 2017

Accelerating self-consistent field theory of block polymers in a variable unit cell.

J Chem Phys 2017 Jun;146(24):244902

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.4986643DOI Listing
June 2017

Role of growth rate on the orientational alignment of in a slit.

R Soc Open Sci 2017 Jun 21;4(6):170463. Epub 2017 Jun 21.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Avenue SE, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1098/rsos.170463DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5493932PMC
June 2017

Equilibration of Micelle-Polyelectrolyte Complexes: Mechanistic Differences between Static and Annealed Charge Distributions.

J Phys Chem B 2017 05 25;121(17):4631-4641. Epub 2017 Apr 25.

Department of Chemistry and ‡Department of Chemical Engineering & Materials Science, University of Minnesota , Minneapolis, Minnesota 55455, United States.

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http://dx.doi.org/10.1021/acs.jpcb.7b01953DOI Listing
May 2017

Thermal processing of diblock copolymer melts mimics metallurgy.

Science 2017 05;356(6337):520-523

Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN 55455-0132, USA.

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http://dx.doi.org/10.1126/science.aam7212DOI Listing
May 2017

Simulations of knotting of DNA during genome mapping.

Biomicrofluidics 2017 Mar 11;11(2):024117. Epub 2017 Apr 11.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.4979605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5533507PMC
March 2017

Wall depletion length of a channel-confined polymer.

Phys Rev E 2017 Feb 15;95(2-1):022501. Epub 2017 Feb 15.

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1103/PhysRevE.95.022501DOI Listing
February 2017

Modeling the relaxation of internal DNA segments during genome mapping in nanochannels.

Biomicrofluidics 2016 Sep 13;10(5):054117. Epub 2016 Oct 13.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities , 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.4964927DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5065570PMC
September 2016

Particle-directed assembly of semiflexible polymer chains.

Soft Matter 2016 Jul;12(29):6214-22

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://xlink.rsc.org/?DOI=C6SM00785F
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http://dx.doi.org/10.1039/c6sm00785fDOI Listing
July 2016

Cornucopia of Nanoscale Ordered Phases in Sphere-Forming Tetrablock Terpolymers.

ACS Nano 2016 05 13;10(5):4961-72. Epub 2016 Apr 13.

Department of Chemical Engineering and Materials Science, University of Minnesota , Minneapolis, Minnesota 55455, United States.

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http://dx.doi.org/10.1021/acsnano.6b00495DOI Listing
May 2016

Fast, Efficient, and Gentle Transfection of Human Adherent Cells in Suspension.

ACS Appl Mater Interfaces 2016 Apr 1;8(14):8870-4. Epub 2016 Apr 1.

Department of Chemistry, University of Minnesota , Minneapolis, Minnesota 55455, United States.

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http://dx.doi.org/10.1021/acsami.6b01702DOI Listing
April 2016

The Backfolded Odijk Regime for Wormlike Chains Confined in Rectangular Nanochannels.

Polymers (Basel) 2016 Mar 14;8(3). Epub 2016 Mar 14.

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave. SE, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.3390/polym8030079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6432538PMC
March 2016

Effect of excluded volume on the force-extension of wormlike chains in slit confinement.

J Chem Phys 2016 Mar;144(10):104902

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.4943195DOI Listing
March 2016

A computational model of flow and species transport in the mesangium.

Am J Physiol Renal Physiol 2016 Feb 14;310(3):F222-9. Epub 2015 Oct 14.

Biomedical Engineering, University of Minnesota, Minneapolis, Minnesota;

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http://dx.doi.org/10.1152/ajprenal.00182.2015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888564PMC
February 2016

Cell-matrix interaction during strain-dependent remodelling of simulated collagen networks.

Interface Focus 2016 Feb;6(1):20150069

Department of Biomedical Engineering , University of Minnesota , 7-105 Nils Hasselmo Hall, 312 Church Street SE, Minneapolis, MN 55455 , USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4686243PMC
http://dx.doi.org/10.1098/rsfs.2015.0069DOI Listing
February 2016

Finite-size corrections for confined polymers in the extended de Gennes regime.

Phys Rev E Stat Nonlin Soft Matter Phys 2015 Dec 17;92(6):062601. Epub 2015 Dec 17.

Department of Physics, University of Gothenburg, Origovägen 6B, 412 96 Göteborg, Sweden.

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http://dx.doi.org/10.1103/PhysRevE.92.062601DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4714778PMC
December 2015

Measurements of DNA barcode label separations in nanochannels from time-series data.

Biomicrofluidics 2015 Nov 29;9(6):064119. Epub 2015 Dec 29.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities , 421 Washington Ave SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.4938732DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4698118PMC
November 2015

Modeling the stretching of wormlike chains in the presence of excluded volume.

Soft Matter 2015 Aug;11(29):5947-54

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1039/c5sm01333jDOI Listing
August 2015

Effect of Supercoiling on the Mechanical and Permeability Properties of Model Collagen IV Networks.

Ann Biomed Eng 2015 Jul 19;43(7):1695-705. Epub 2014 Nov 19.

Department of Biomedical Engineering, University of Minnesota, 7-105 Nils Hasselmo Hall, 312 Church St. SE, Minneapolis, MN, 55455, USA,

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http://dx.doi.org/10.1007/s10439-014-1187-1DOI Listing
July 2015

Topological events in single molecules of E. coli DNA confined in nanochannels.

Analyst 2015 Jul 20;140(14):4887-94. Epub 2015 May 20.

BioNano Genomics, 9640 Towne Centre Drive, Ste 100, San Diego, CA 92121, USA.

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http://dx.doi.org/10.1039/c5an00343aDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4486629PMC
July 2015

Experimental evidence of weak excluded volume effects for nanochannel confined DNA.

ACS Macro Lett 2015 Jul 2;4(7):759-763. Epub 2015 Jul 2.

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1021/acsmacrolett.5b00340DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4671635PMC
July 2015

Commensurability and finite size effects in lattice simulations of diblock copolymers.

Soft Matter 2015 Jun 21;11(24):4862-7. Epub 2015 May 21.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://xlink.rsc.org/?DOI=C5SM00838G
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http://dx.doi.org/10.1039/c5sm00838gDOI Listing
June 2015

Kirkwood diffusivity of long semiflexible chains in nanochannel confinement.

Macromolecules 2015 Apr;48(8):2829-2839

Department of Chemical Engineering and Materials Science, University of Minnesota -Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1021/acs.macromol.5b00377DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4494130PMC
April 2015

Evaluation of the Kirkwood approximation for the diffusivity of channel-confined DNA chains in the de Gennes regime.

Biomicrofluidics 2015 Mar 7;9(2):024112. Epub 2015 Apr 7.

Department of Chemical Engineering and Material Science, University of Minnesota-Twin Cities , 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.4917269DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4393413PMC
March 2015

Label-free DNA sensing platform with low-voltage electrolyte-gated transistors.

Anal Chem 2015 Feb 21;87(3):1861-6. Epub 2015 Jan 21.

Department of Chemical Engineering and Materials Science, University of Minnesota , Minneapolis, Minnesota 55455, United States.

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http://dx.doi.org/10.1021/ac503914xDOI Listing
February 2015

Distribution of distances between DNA barcode labels in nanochannels close to the persistence length.

J Chem Phys 2015 Feb;142(6):064902

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.4907552DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4327924PMC
February 2015

Hydrodynamics of DNA confined in nanoslits and nanochannels.

Eur Phys J Spec Top 2014 Dec;223(14):3179-3200

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave. SE, Minneapolis, MN 55455 USA ; Materials Research Laboratory, University of California - Santa Barbara, Santa Barbara, CA 93106 USA.

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http://link.springer.com/10.1140/epjst/e2014-02326-4
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http://dx.doi.org/10.1140/epjst/e2014-02326-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4282777PMC
December 2014

Measuring bacterial adaptation dynamics at the single-cell level using a microfluidic chemostat and time-lapse fluorescence microscopy.

Analyst 2014 Oct 19;139(20):5254-62. Epub 2014 Aug 19.

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave. SE, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1039/c4an00877dDOI Listing
October 2014

Assessing corrections to the Fick-Jacobs equation.

J Chem Phys 2014 Jul;141(4):044118

Department of Mathematics, Technion - Israel Institute of Technology, Haifa 32000, Israel.

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http://aip.scitation.org/doi/10.1063/1.4890740
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http://dx.doi.org/10.1063/1.4890740DOI Listing
July 2014

Mixed confinement regimes during equilibrium confinement spectroscopy of DNA.

J Chem Phys 2014 Jun;140(21):214901

Physics Department, McGill University, 3600 rue University, Montreal, Quebec H3A 2T8, Canada.

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http://dx.doi.org/10.1063/1.4879515DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4048444PMC
June 2014

Persistent super-diffusive motion of Escherichia coli chromosomal loci.

Nat Commun 2014 May 30;5:3854. Epub 2014 May 30.

1] Laboratory of Computational and Quantitative Biology, UMR 7238, UPMC, University of Paris 06, Sorbonne Universités, 15 Rue de l'École de Médecine Paris, F-75006 Paris, France [2] Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, USA [3] CNRS, UMR 7238, Paris F-75006, France.

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http://dx.doi.org/10.1038/ncomms4854DOI Listing
May 2014

Tilted post arrays for separating long DNA.

Biomicrofluidics 2014 May 16;8(3):034115. Epub 2014 Jun 16.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities , 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.4884521DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162435PMC
May 2014

Comparison of microfabricated hexagonal and lamellar post arrays for DNA electrophoresis.

Electrophoresis 2014 Mar 27;35(5):654-61. Epub 2013 Nov 27.

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, Minneapolis, MN, USA.

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http://dx.doi.org/10.1002/elps.201300381DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3973148PMC
March 2014

Tilted hexagonal post arrays: DNA electrophoresis in anisotropic media.

Electrophoresis 2014 Feb 14;35(2-3):405-11. Epub 2013 Sep 14.

Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, USA.

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http://dx.doi.org/10.1002/elps.201300191DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3895500PMC
February 2014

Interplay between chain stiffness and excluded volume of semiflexible polymers confined in nanochannels.

J Chem Phys 2014 Feb;140(8):084905

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.4865965DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3977884PMC
February 2014

Entropic depletion of DNA in triangular nanochannels.

Biomicrofluidics 2013 1;7(2):24102. Epub 2013 Mar 1.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.4794371DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3598824PMC
December 2013

Modeling the relaxation time of DNA confined in a nanochannel.

Biomicrofluidics 2013 22;7(5):54118. Epub 2013 Oct 22.

Department of Chemical Engineering and Material Science, University of Minnesota-Twin Cities, 421 Washington Ave SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.4826156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820670PMC
December 2013

Dynamics of polymer adsorption from dilute solution in shear flow near a planar wall.

J Chem Phys 2013 Nov;139(17):174905

Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.4827255DOI Listing
November 2013

Is DNA a Good Model Polymer?

Macromolecules 2013 Oct;46(20)

Department of Chemical Engineering and Materials Science, University of Minnesota.

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http://dx.doi.org/10.1021/ma401507fDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3859536PMC
October 2013

Ratchet nanofiltration of DNA.

Lab Chip 2013 Sep;13(18):3741-6

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave SE, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1039/c3lc50496dDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3821962PMC
September 2013

Mechanical response of wild-type and Alport murine lens capsules during osmotic swelling.

Exp Eye Res 2013 Aug 21;113:87-91. Epub 2013 May 21.

Department of Biomedical Engineering, University of Minnesota, 7-105 Nils Hasselmo Hall, 312 Church St. SE, Minneapolis, MN 55455, United States.

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http://dx.doi.org/10.1016/j.exer.2013.05.008DOI Listing
August 2013

Role of order during Ogston sieving of DNA in colloidal crystals.

Anal Chem 2013 Aug 30;85(16):7769-76. Epub 2013 Jul 30.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, United States.

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http://dx.doi.org/10.1021/ac4010327DOI Listing
August 2013

Extension of DNA in a nanochannel as a rod-to-coil transition.

Phys Rev Lett 2013 May 13;110(20):208103. Epub 2013 May 13.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1103/PhysRevLett.110.208103DOI Listing
May 2013

Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching.

Chem Rev 2013 Apr 12;113(4):2584-667. Epub 2012 Nov 12.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1021/cr3002142DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3595390PMC
April 2013

Revisiting blob theory for DNA diffusivity in slitlike confinement.

Phys Rev Lett 2013 Apr 19;110(16):168105. Epub 2013 Apr 19.

BioSystems and Micromechanics IRG, Singapore-MIT Alliance for Research and Technology Centre, Singapore 117543, Singapore.

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http://dx.doi.org/10.1103/PhysRevLett.110.168105DOI Listing
April 2013

Microfluidic chemostat for measuring single cell dynamics in bacteria.

Lab Chip 2013 Mar 18;13(5):947-54. Epub 2013 Jan 18.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1039/c2lc41196bDOI Listing
March 2013

The Fluid Mechanics of Genome Mapping.

Authors:
Kevin D Dorfman

AIChE J 2013 Feb;59(2):346-354

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave. SE, Minneapolis, MN 55455, .

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http://dx.doi.org/10.1002/aic.14002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3638963PMC
February 2013

Adsorption of single polymer molecules in shear flow near a planar wall.

J Chem Phys 2013 Jan;138(3):034905

Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.4773859DOI Listing
January 2013

Relationship between frequency and deflection angle in the DNA prism.

Phys Rev E Stat Nonlin Soft Matter Phys 2013 Jan 28;87(1):012723. Epub 2013 Jan 28.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave SE, Minneapolis, Minnesota 55455, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3597986PMC
http://dx.doi.org/10.1103/PhysRevE.87.012723DOI Listing
January 2013

Experimental study of the effect of disorder on DNA dynamics in post arrays during electrophoresis.

Phys Rev E Stat Nonlin Soft Matter Phys 2012 Oct 12;86(4 Pt 1):041909. Epub 2012 Oct 12.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1103/PhysRevE.86.041909DOI Listing
October 2012

A model of strain-dependent glomerular basement membrane maintenance and its potential ramifications in health and disease.

J Biomech Eng 2012 Aug;134(8):081006

Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1115/1.4007098DOI Listing
August 2012

Physical descriptions of the bacterial nucleoid at large scales, and their biological implications.

Rep Prog Phys 2012 Jul 28;75(7):076602. Epub 2012 Jun 28.

Dipartimento di Fisica e Matematica, Università dell'Insubria, Como, Italy.

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http://dx.doi.org/10.1088/0034-4885/75/7/076602DOI Listing
July 2012

Mobility of a semiflexible chain confined in a nanochannel.

Phys Rev Lett 2012 Jun 1;108(22):228105. Epub 2012 Jun 1.

Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3503239PMC
http://dx.doi.org/10.1103/PhysRevLett.108.228105DOI Listing
June 2012

DNA electrophoresis in a nanofence array.

Lab Chip 2012 Apr 2;12(8):1463-70. Epub 2012 Mar 2.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave SE, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1039/c2lc00016dDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3508065PMC
April 2012

Statistical properties of the electrophoretic collision of a long DNA molecule with a small obstacle.

Electrophoresis 2012 Mar;33(6):1013-20

Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN 55455, USA.

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http://doi.wiley.com/10.1002/elps.201100471
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http://dx.doi.org/10.1002/elps.201100471DOI Listing
March 2012

Moving beyond Watson-Crick models of coarse grained DNA dynamics.

J Chem Phys 2011 Nov;135(20):205102

Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Ave SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.3662137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3248023PMC
November 2011

Simulation of DNA Extension in Nanochannels.

Macromolecules 2011 Aug;44(16):6594-6604

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave. SE, Minneapolis, MN 55455.

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http://pubs.acs.org/doi/abs/10.1021/ma201277e
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http://dx.doi.org/10.1021/ma201277eDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3158571PMC
August 2011

Continuous-time random walk models of DNA electrophoresis in a post array: part II. Mobility and sources of band broadening.

Electrophoresis 2011 Feb 3;32(5):581-7. Epub 2011 Feb 3.

Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, USA.

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http://dx.doi.org/10.1002/elps.201000467DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3047477PMC
February 2011

Continuous-time random walk models of DNA electrophoresis in a post array: part I. Evaluation of existing models.

Electrophoresis 2011 Feb 7;32(5):573-80. Epub 2011 Feb 7.

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, Minneapolis, MN, USA.

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http://doi.wiley.com/10.1002/elps.201000466
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February 2011

DNA electrophoresis in confined, periodic geometries: a new lakes-straits model.

J Chem Phys 2010 Dec;133(23):234104

Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.3516176DOI Listing
December 2010

Giant biocompatible and biodegradable PEG-PMCL vesicles and microcapsules by solvent evaporation from double emulsion droplets.

J Colloid Interface Sci 2010 Nov 12;351(1):140-50. Epub 2010 May 12.

University of Minnesota, Department of Chemical Engineering and Materials Science, 421 Washington Ave. SE, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1016/j.jcis.2010.05.020DOI Listing
November 2010

Collision of a long DNA molecule with an isolated nanowire.

Electrophoresis 2010 Nov 21;31(22):3675-80. Epub 2010 Oct 21.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1002/elps.201000331DOI Listing
November 2010

Elasticity of the porcine lens capsule as measured by osmotic swelling.

J Biomech Eng 2010 Sep;132(9):091008

Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1115/1.4002024DOI Listing
September 2010

Analysis of a DNA simulation model through hairpin melting experiments.

J Chem Phys 2010 Sep;133(12):125101

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.3480685DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2955729PMC
September 2010

Brownian dynamics simulations of electrophoretic DNA separations in a sparse ordered post array.

J Chromatogr A 2010 Aug 30;1217(34):5522-8. Epub 2010 Jun 30.

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, 421 Washington Ave SE, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1016/j.chroma.2010.06.057DOI Listing
August 2010

Rapid ejection of giant Pluronic L121 vesicles from spreading double emulsion droplets.

Langmuir 2010 Jun;26(12):9666-72

University of Minnesota, Department of Chemical Engineering and Materials Science, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1021/la1002429DOI Listing
June 2010

Electrophoretic collision of a DNA molecule with a small elliptical obstacle.

Electrophoresis 2010 Mar;31(5):860-7

Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1002/elps.200900491DOI Listing
March 2010

Statistics of tethered self-avoiding chains under spherical confinement and an external force.

J Chem Phys 2010 Feb;132(8):084108

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.3330916DOI Listing
February 2010

Onset of channeling during DNA electrophoresis in a sparse ordered post array.

Biomicrofluidics 2010 Jan 7;4(1):13203. Epub 2010 Jan 7.

Department of Chemical Engineering and Materials Science, University of Minnesota, Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455 USA.

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http://aip.scitation.org/doi/10.1063/1.3283903
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http://dx.doi.org/10.1063/1.3283903DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2905263PMC
January 2010

Coarse-Grained Brownian Dynamics Simulations of the 10-23 DNAzyme.

Biophys J 2009 Nov;97(10):2785-93

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, Minneapolis, Minnesota, USA.

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http://dx.doi.org/10.1016/j.bpj.2009.09.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2776252PMC
November 2009

DNA electrophoresis in a sparse ordered post array.

Phys Rev E Stat Nonlin Soft Matter Phys 2009 Jun 4;79(6 Pt 1):061904. Epub 2009 Jun 4.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, USA.

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https://link.aps.org/doi/10.1103/PhysRevE.79.061904
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June 2009

A boundary element method/Brownian dynamics approach for simulating DNA electrophoresis in electrically insulating microfabricated devices.

Electrophoresis 2009 May;30(9):1482-9

Department of Chemical Engineering and Materials Science, University of Minnesota - Twin Cities, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1002/elps.200800582DOI Listing
May 2009

Brownian dynamics simulations of single-stranded DNA hairpins.

J Chem Phys 2009 Mar;130(9):095101

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1063/1.3078795DOI Listing
March 2009

DNA unhooking from a single post as a deterministic process: insights from translocation modeling.

Phys Rev E Stat Nonlin Soft Matter Phys 2009 Mar 31;79(3 Pt 1):031928. Epub 2009 Mar 31.

Department of Chemical Engineering and Materials Science, University of Minnesota-Twin Cities, 421 Washington Ave. SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1103/PhysRevE.79.031928DOI Listing
March 2009

Comment on "Taylor dispersion with absorbing boundaries: a stochastic approach".

Phys Rev Lett 2008 Jan 17;100(2):029401; discussion 029403. Epub 2008 Jan 17.

CEMS University of Minnesota 421 Washington Ave SE Minneapolis, Minnesota 55455, USA.

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https://link.aps.org/doi/10.1103/PhysRevLett.100.029401
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January 2008

Nonequilibrium transport of rigid macromolecules in periodically constricted geometries.

Phys Rev Lett 2007 Mar 1;98(9):098106. Epub 2007 Mar 1.

Department of Chemical Engineering and Materials Science, University of Minnesota, Twin Cities, 421 Washington Avenue SE, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1103/PhysRevLett.98.098106DOI Listing
March 2007

Theory of band broadening during cycling temperature capillary electrophoresis.

Electrophoresis 2007 Feb;28(4):665-73

Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1002/elps.200600565DOI Listing
February 2007