Kevin A T Silverstein

Kevin A T Silverstein

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Kevin A T Silverstein

Kevin A T Silverstein

Publications by authors named "Kevin A T Silverstein"

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Gene Regulation Shifts Shed Light on Fungal Adaption in Plant Biomass Decomposers.

mBio 2019 11 19;10(6). Epub 2019 Nov 19.

Department of Plant and Microbial Biology, University of Minnesota, Saint Paul, Minnesota, USA

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http://dx.doi.org/10.1128/mBio.02176-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6867892PMC
November 2019

Nodule-specific PLAT domain proteins are expanded in the Medicago lineage and required for nodulation.

New Phytol 2019 05 27;222(3):1538-1550. Epub 2019 Feb 27.

Department of Plant Pathology, University of Minnesota, Saint Paul, MN, 55108, USA.

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http://dx.doi.org/10.1111/nph.15697DOI Listing
May 2019

ODG: Omics database generator - a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding.

BMC Bioinformatics 2017 Aug 10;18(1):367. Epub 2017 Aug 10.

Department of Plant Pathology, 495 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN, 55108, USA.

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http://dx.doi.org/10.1186/s12859-017-1777-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5553995PMC
August 2017

CNV-RF Is a Random Forest-Based Copy Number Variation Detection Method Using Next-Generation Sequencing.

J Mol Diagn 2016 11 3;18(6):872-881. Epub 2016 Sep 3.

Department of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, Minnesota. Electronic address:

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http://dx.doi.org/10.1016/j.jmoldx.2016.07.001DOI Listing
November 2016

Augmenting Chinese hamster genome assembly by identifying regions of high confidence.

Biotechnol J 2016 Sep 19;11(9):1151-7. Epub 2016 Jul 19.

Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, USA.

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http://dx.doi.org/10.1002/biot.201500455DOI Listing
September 2016

ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly.

Genome Med 2015 Dec 7;7:127. Epub 2015 Dec 7.

Supercomputing Institute for Advanced Computational Research, University of Minnesota, 117 Pleasant St. SE, RM 541, Minneapolis, MN, 55455, USA.

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http://dx.doi.org/10.1186/s13073-015-0251-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4671222PMC
December 2015

Transposon Mutagenesis Screen Identifies Potential Lung Cancer Drivers and CUL3 as a Tumor Suppressor.

Mol Cancer Res 2015 Aug 20;13(8):1238-47. Epub 2015 May 20.

Department of Obstetrics, Gynecology and Women's Health, University of Minnesota, Minneapolis, Minnesota. Masonic Cancer Center, University of Minnesota, Minneapolis, Minnesota. Department of Genetic, Cell Biology and Development, University of Minnesota, Minneapolis, Minnesota.

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http://dx.doi.org/10.1158/1541-7786.MCR-14-0674-TDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4543426PMC
August 2015

Clinical validation of targeted next-generation sequencing for inherited disorders.

Arch Pathol Lab Med 2015 Feb;139(2):204-10

From the Department of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis (Drs Yohe, Wilson, Zhou, Spears, and Thyagarajan); the University of Minnesota Genomics Center (Mr Hauge, Mss Bunjer and Deshpande, and Dr Beckman); the Molecular Diagnostics Laboratory, Fairview-University of Minnesota Medical Center (Ms Kemmer and Messrs Bower and Schomaker); the Division of Genetics and Metabolism, University of Minnesota (Mr Bower); and the Minnesota Supercomputing Institute, University of Minnesota (Drs Onsongo and Silverstein and Mr Erdmann).

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http://dx.doi.org/10.5858/arpa.2013-0625-OADOI Listing
February 2015

Genomic characterization of the LEED..PEEDs, a gene family unique to the medicago lineage.

G3 (Bethesda) 2014 Aug 25;4(10):2003-12. Epub 2014 Aug 25.

Department of Plant Biology, University of Minnesota, St. Paul, Minnesota 55108

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http://dx.doi.org/10.1534/g3.114.011874DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4199706PMC
August 2014

Fatty acid-binding protein E-FABP restricts tumor growth by promoting IFN-β responses in tumor-associated macrophages.

Cancer Res 2014 Jun 8;74(11):2986-98. Epub 2014 Apr 8.

Authors' Affiliations: The Hormel Institute, University of Minnesota, Austin; Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota; and University of Texas Health Science Center, Tyler, Texas

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http://dx.doi.org/10.1158/0008-5472.CAN-13-2689DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4040301PMC
June 2014

Patterns of divergence of a large family of nodule cysteine-rich peptides in accessions of Medicago truncatula.

Plant J 2014 May 23;78(4):697-705. Epub 2014 Apr 23.

Department of Plant Biology, University of Minnesota, 250 Biological Sciences, 1445 Gortner Avenue, Saint Paul, MN, 55108, USA.

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http://dx.doi.org/10.1111/tpj.12506DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4282536PMC
May 2014

Implementation of Cloud based next generation sequencing data analysis in a clinical laboratory.

BMC Res Notes 2014 May 23;7:314. Epub 2014 May 23.

Research Informatics Support Systems, Minnesota Supercomputing Institute, University of Minnesota, Room 599 Walter Library 117 Pleasant St SE, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1186/1756-0500-7-314DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4036707PMC
May 2014

SHEAR: sample heterogeneity estimation and assembly by reference.

BMC Genomics 2014 Jan 29;15:84. Epub 2014 Jan 29.

Quantitative Biomedical Research Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.

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http://dx.doi.org/10.1186/1471-2164-15-84DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4007568PMC
January 2014

TALEN-engineered AR gene rearrangements reveal endocrine uncoupling of androgen receptor in prostate cancer.

Proc Natl Acad Sci U S A 2013 Oct 7;110(43):17492-7. Epub 2013 Oct 7.

Masonic Cancer Center, Graduate Program in Molecular, Cellular, and Developmental Biology and Genetics, and Biostatistics and Bioinformatics Core, Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1308587110
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http://dx.doi.org/10.1073/pnas.1308587110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3808622PMC
October 2013

MMuFLR: missense mutation and frameshift location reporter.

Bioinformatics 2013 Sep 3;29(18):2353-4. Epub 2013 Jul 3.

Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4036437PMC
September 2013

Androgen receptor splice variants mediate enzalutamide resistance in castration-resistant prostate cancer cell lines.

Cancer Res 2013 Jan 1;73(2):483-9. Epub 2012 Nov 1.

Masonic Cancer Center, University of Minnesota, 420 Delaware Street SE, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-12-3630DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3549016PMC
January 2013

Identification and characterization of the defensin-like gene family of grapevine.

Mol Plant Microbe Interact 2012 Aug;25(8):1118-31

IASMA Research and Innovation Centre, San Michele all'Adige, Italy.

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http://dx.doi.org/10.1094/MPMI-12-11-0323DOI Listing
August 2012

TAPDANCE: an automated tool to identify and annotate transposon insertion CISs and associations between CISs from next generation sequence data.

BMC Bioinformatics 2012 Jun 29;13:154. Epub 2012 Jun 29.

Biostatistics and Bioinformatics Masonic Cancer Center, University of Minnesota, Minneapolis, USA.

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http://dx.doi.org/10.1186/1471-2105-13-154DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3461456PMC
June 2012

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Authors:
Nevin D Young Frédéric Debellé Giles E D Oldroyd Rene Geurts Steven B Cannon Michael K Udvardi Vagner A Benedito Klaus F X Mayer Jérôme Gouzy Heiko Schoof Yves Van de Peer Sebastian Proost Douglas R Cook Blake C Meyers Manuel Spannagl Foo Cheung Stéphane De Mita Vivek Krishnakumar Heidrun Gundlach Shiguo Zhou Joann Mudge Arvind K Bharti Jeremy D Murray Marina A Naoumkina Benjamin Rosen Kevin A T Silverstein Haibao Tang Stephane Rombauts Patrick X Zhao Peng Zhou Valérie Barbe Philippe Bardou Michael Bechner Arnaud Bellec Anne Berger Hélène Bergès Shelby Bidwell Ton Bisseling Nathalie Choisne Arnaud Couloux Roxanne Denny Shweta Deshpande Xinbin Dai Jeff J Doyle Anne-Marie Dudez Andrew D Farmer Stéphanie Fouteau Carolien Franken Chrystel Gibelin John Gish Steven Goldstein Alvaro J González Pamela J Green Asis Hallab Marijke Hartog Axin Hua Sean J Humphray Dong-Hoon Jeong Yi Jing Anika Jöcker Steve M Kenton Dong-Jin Kim Kathrin Klee Hongshing Lai Chunting Lang Shaoping Lin Simone L Macmil Ghislaine Magdelenat Lucy Matthews Jamison McCorrison Erin L Monaghan Jeong-Hwan Mun Fares Z Najar Christine Nicholson Céline Noirot Majesta O'Bleness Charles R Paule Julie Poulain Florent Prion Baifang Qin Chunmei Qu Ernest F Retzel Claire Riddle Erika Sallet Sylvie Samain Nicolas Samson Iryna Sanders Olivier Saurat Claude Scarpelli Thomas Schiex Béatrice Segurens Andrew J Severin D Janine Sherrier Ruihua Shi Sarah Sims Susan R Singer Senjuti Sinharoy Lieven Sterck Agnès Viollet Bing-Bing Wang Keqin Wang Mingyi Wang Xiaohong Wang Jens Warfsmann Jean Weissenbach Doug D White Jim D White Graham B Wiley Patrick Wincker Yanbo Xing Limei Yang Ziyun Yao Fu Ying Jixian Zhai Liping Zhou Antoine Zuber Jean Dénarié Richard A Dixon Gregory D May David C Schwartz Jane Rogers Francis Quétier Christopher D Town Bruce A Roe

Nature 2011 Nov 16;480(7378):520-4. Epub 2011 Nov 16.

Department of Plant Pathology, University of Minnesota, St Paul, Minnesota 55108, USA.

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http://dx.doi.org/10.1038/nature10625DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3272368PMC
November 2011

Expression of endogenous antimicrobial peptides in normal canine skin.

Vet Dermatol 2009 Feb 14;20(1):19-26. Epub 2008 Nov 14.

Department of Veterinary Clinical Science, 1365 Gortner Avenue, 337 VMC, University of Minnesota, St. Paul, MN 55108, USA.

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http://dx.doi.org/10.1111/j.1365-3164.2008.00707.xDOI Listing
February 2009

The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals.

BMC Mol Biol 2008 Nov 18;9:104. Epub 2008 Nov 18.

Department of Biochemistry, Molecular Biology and Biophysics, Institute for Molecular Virology, Beckman Center for Genome Engineering, University of Minnesota, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1186/1471-2199-9-104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2612020PMC
November 2008

Small cysteine-rich peptides resembling antimicrobial peptides have been under-predicted in plants.

Plant J 2007 Jul 12;51(2):262-80. Epub 2007 Jun 12.

Department of Plant Biology, University of Minnesota, St Paul, MN 55108, USA.

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http://dx.doi.org/10.1111/j.1365-313X.2007.03136.xDOI Listing
July 2007

Novel paralogous gene families with potential function in legume nodules and seeds.

Curr Opin Plant Biol 2006 Apr 3;9(2):142-6. Epub 2006 Feb 3.

Department of Plant Biology, University of Minnesota, St. Paul, Minnesota 55108, USA.

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http://dx.doi.org/10.1016/j.pbi.2006.01.002DOI Listing
April 2006

Transcript analysis of early nodulation events in Medicago truncatula.

Plant Physiol 2006 Jan 23;140(1):221-34. Epub 2005 Dec 23.

Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108, USA.

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http://dx.doi.org/10.1104/pp.105.070326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1326046PMC
January 2006

Genome organization of more than 300 defensin-like genes in Arabidopsis.

Plant Physiol 2005 Jun;138(2):600-10

Department of Plant Biology, University of Minnesota, St. Paul, Minnesota 55108, USA.

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http://www.plantphysiol.org/cgi/doi/10.1104/pp.105.060079
Publisher Site
http://dx.doi.org/10.1104/pp.105.060079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1150381PMC
June 2005

TableView: portable genomic data visualization.

Bioinformatics 2003 Jul;19(10):1292-3

Center for Computational Genomics and Bioinformatics, University of Minnesota, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg136DOI Listing
July 2003