Kessy Abarenkov

Kessy Abarenkov

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Kessy Abarenkov

Kessy Abarenkov

Publications by authors named "Kessy Abarenkov"

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31Publications

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Protax-fungi: a web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences.

New Phytol 2018 10 23;220(2):517-525. Epub 2018 Jul 23.

Organismal and Evolutionary Biology Research Programme, University of Helsinki, PO Box 65, Helsinki, FI-00014, Finland.

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http://dx.doi.org/10.1111/nph.15301DOI Listing
October 2018

Sequence-based classification and identification of Fungi.

Mycologia 2016 Nov/Dec;108(6):1049-1068

l Department of Plant Pathology and Environmental Microbiology, 121 Buckhout Laboratory, Penn State University, University Park, Pennsylvania 16802.

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http://dx.doi.org/10.3852/16-130DOI Listing
January 2018

Standardizing metadata and taxonomic identification in metabarcoding studies.

Gigascience 2015 31;4:34. Epub 2015 Jul 31.

Natural History Museum, University of Tartu, 14a Ravila, 50411 Tartu, Estonia.

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http://dx.doi.org/10.1186/s13742-015-0074-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4521374PMC
July 2016

FUNGAL BIOGEOGRAPHY. Response to Comment on "Global diversity and geography of soil fungi".

Science 2015 Aug 27;349(6251):936. Epub 2015 Aug 27.

Natural History Museum, University of Tartu, Tartu, Estonia.

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http://dx.doi.org/10.1126/science.aaa5594DOI Listing
August 2015

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi.

Authors:
Conrad L Schoch Barbara Robbertse Vincent Robert Duong Vu Gianluigi Cardinali Laszlo Irinyi Wieland Meyer R Henrik Nilsson Karen Hughes Andrew N Miller Paul M Kirk Kessy Abarenkov M Catherine Aime Hiran A Ariyawansa Martin Bidartondo Teun Boekhout Bart Buyck Qing Cai Jie Chen Ana Crespo Pedro W Crous Ulrike Damm Z Wilhelm De Beer Bryn T M Dentinger Pradeep K Divakar Margarita Dueñas Nicolas Feau Katerina Fliegerova Miguel A García Zai-Wei Ge Gareth W Griffith Johannes Z Groenewald Marizeth Groenewald Martin Grube Marieka Gryzenhout Cécile Gueidan Liangdong Guo Sarah Hambleton Richard Hamelin Karen Hansen Valérie Hofstetter Seung-Beom Hong Jos Houbraken Kevin D Hyde Patrik Inderbitzin Peter R Johnston Samantha C Karunarathna Urmas Kõljalg Gábor M Kovács Ekaphan Kraichak Krisztina Krizsan Cletus P Kurtzman Karl-Henrik Larsson Steven Leavitt Peter M Letcher Kare Liimatainen Jian-Kui Liu D Jean Lodge Janet Jennifer Luangsa-ard H Thorsten Lumbsch Sajeewa S N Maharachchikumbura Dimuthu Manamgoda María P Martín Andrew M Minnis Jean-Marc Moncalvo Giuseppina Mulè Karen K Nakasone Tuula Niskanen Ibai Olariaga Tamás Papp Tamás Petkovits Raquel Pino-Bodas Martha J Powell Huzefa A Raja Dirk Redecker J M Sarmiento-Ramirez Keith A Seifert Bhushan Shrestha Soili Stenroos Benjamin Stielow Sung-Oui Suh Kazuaki Tanaka Leho Tedersoo M Teresa Telleria Dhanushka Udayanga Wendy A Untereiner Javier Diéguez Uribeondo Krishna V Subbarao Csaba Vágvölgyi Cobus Visagie Kerstin Voigt Donald M Walker Bevan S Weir Michael Weiß Nalin N Wijayawardene Michael J Wingfield J P Xu Zhu L Yang Ning Zhang Wen-Ying Zhuang Scott Federhen

Database (Oxford) 2014 30;2014. Epub 2014 Jun 30.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA, CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands, Department of Pharmaceutical Sciences - Microbiology, Università degli Studi di Perugia, Perugia, Italy, Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, The University of Sydney, Westmead Millennium Institute, Westmead, Australia, Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Göteborg, Sweden, Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37920, USA, Illinois Natural History Survey, University of Illinois, 1816 South Oak Street, Champaign, IL 61820, USA, Mycology Section, Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, UK, Natural History Museum, University of Tartu, 46 Vanemuise, 51014 Tartu, Estonia, Purdue University, Department of Botany and Plant Pathology, 915 W. State Street, West Lafayette, IN 47907, USA, Institute of Excellence in Fungal Research, and School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand, Imperial College London, Royal Botanic Gardens, Kew TW9 3DS, England, UK, Muséum National d'Histoire Naturelle, Dépt. Systématique et Evolution CP39, UMR7205, 12 Rue Buffon, F-75005 Paris, France, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, P. R. China, Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid 28040, Spain, Senckenberg Museum of Natural History Görlitz, PF 300 154, 02806 Görlitz, Germany, Department of Microbiology and Plant Pathology, Forestry Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001, South Africa, Real Jardín Botánico, RJB-CSIC,

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http://dx.doi.org/10.1093/database/bau061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4075928PMC
February 2015

Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses.

Mol Ecol 2014 Aug 23;23(16):4168-83. Epub 2014 Jul 23.

Natural History Museum of Tartu University, 14A Ravila, Tartu, 50411, Estonia.

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http://dx.doi.org/10.1111/mec.12849DOI Listing
August 2014

Resistance and resilience of the forest soil microbiome to logging-associated compaction.

ISME J 2014 Jan 12;8(1):226-44. Epub 2013 Sep 12.

Forest Soils and Biogeochemistry, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland.

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http://dx.doi.org/10.1038/ismej.2013.141DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3869018PMC
January 2014

Fungal community analysis by high-throughput sequencing of amplified markers--a user's guide.

New Phytol 2013 Jul 28;199(1):288-99. Epub 2013 Mar 28.

Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.

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http://dx.doi.org/10.1111/nph.12243DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3712477PMC
July 2013

V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences.

J Microbiol Methods 2010 Nov 27;83(2):250-3. Epub 2010 Aug 27.

Department of Microbiology and Immunology, Life Sciences Institute, University of British Columbia, Vancouver, Canada.

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http://dx.doi.org/10.1016/j.mimet.2010.08.008DOI Listing
November 2010

An open source chimera checker for the fungal ITS region.

Mol Ecol Resour 2010 Nov;10(6):1076-81

Department of Plant and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Göteborg, Sweden.

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http://dx.doi.org/10.1111/j.1755-0998.2010.02850.xDOI Listing
November 2010

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases.

New Phytol 2010 Oct 15;188(1):291-301. Epub 2010 Jul 15.

Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, 40 Lai St, 51005 Tartu, Estonia.

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http://dx.doi.org/10.1111/j.1469-8137.2010.03373.xDOI Listing
October 2010

Mycorrhizal symbionts of Pisonia grandis and P. sechellarum in Seychelles: identification of mycorrhizal fungi and description of new Tomentella species.

Mycologia 2010 May-Jun;102(3):522-33

Institute of Ecology and Earth Sciences, University of Tartu, 14A Ravila Street, 50411 Tartu, Estonia.

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July 2010

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies.

FEMS Microbiol Lett 2009 Jul 1;296(1):97-101. Epub 2009 May 1.

Department of Plant and Environmental Sciences, University of Gothenburg, Göteborg, Sweden.

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https://academic.oup.com/femsle/article-lookup/doi/10.1111/j
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http://dx.doi.org/10.1111/j.1574-6968.2009.01618.xDOI Listing
July 2009

Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers.

New Phytol 2008 8;180(2):479-90. Epub 2008 Jul 8.

Institute of Ecology and Earth Sciences, University of Tartu, 40 Lai Street, EST-51005 Tartu, Estonia.

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http://doi.wiley.com/10.1111/j.1469-8137.2008.02561.x
Publisher Site
http://dx.doi.org/10.1111/j.1469-8137.2008.02561.xDOI Listing
March 2009