Kenneth H Buetow

Kenneth H Buetow

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Kenneth H Buetow

Kenneth H Buetow

Publications by authors named "Kenneth H Buetow"

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High GILT Expression and an Active and Intact MHC Class II Antigen Presentation Pathway Are Associated with Improved Survival in Melanoma.

J Immunol 2019 Oct 7. Epub 2019 Oct 7.

Department of Basic Medical Sciences, University of Arizona College of Medicine, Phoenix, AZ 85004;

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http://dx.doi.org/10.4049/jimmunol.1900476DOI Listing
October 2019

The Pregnancy Pickle: Evolved Immune Compensation Due to Pregnancy Underlies Sex Differences in Human Diseases.

Trends Genet 2019 Jul;35(7):478-488

School of Life Sciences, Arizona State University, Tempe, AZ 85281, USA; Center for Evolution and Medicine, Arizona State University, Tempe, AZ 85281, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tig.2019.04.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6611699PMC
July 2019

Tracking Cancer Genetic Evolution using OncoTrack.

Sci Rep 2016 07 14;6:29647. Epub 2016 Jul 14.

Institut ROCHE, Boulogne, France.

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http://dx.doi.org/10.1038/srep29647DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4944131PMC
July 2016

Quantification of read species behavior within whole genome sequencing of cancer genomes for the stratification and visualization of genomic variation.

Nucleic Acids Res 2016 05 24;44(9):e81. Epub 2016 Jan 24.

Faculty of Life Sciences, Bar-Ilan University, Ramat Gan 52900, Israel

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http://dx.doi.org/10.1093/nar/gkw031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4872078PMC
May 2016

Life sciences domain analysis model.

J Am Med Inform Assoc 2012 Nov-Dec;19(6):1095-102. Epub 2012 Jun 28.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA.

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http://dx.doi.org/10.1136/amiajnl-2011-000763DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486731PMC
April 2013

Integrated cross-species transcriptional network analysis of metastatic susceptibility.

Proc Natl Acad Sci U S A 2012 Feb 30;109(8):3184-9. Epub 2012 Jan 30.

Laboratory of Population Genetics, and Laboratory of Cancer Biology and Genetics, Center for Cancer Research, National Cancer Insitute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1073/pnas.1117872109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3286991PMC
February 2012

Cyberinfrastructure and the biomedical sciences.

Am J Prev Med 2011 May;40(5 Suppl 2):S97-102

Health Communication and Informatics Research Branch, Behavioral Research Program, National Cancer Institute/NIH, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/j.amepre.2011.01.006DOI Listing
May 2011

Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format.

Bioinformatics 2011 Mar 28;27(6):865-6. Epub 2011 Jan 28.

National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051333PMC
March 2011

The BioPAX community standard for pathway data sharing.

Nat Biotechnol 2010 Sep 9;28(9):935-42. Epub 2010 Sep 9.

Computational Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.

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http://dx.doi.org/10.1038/nbt.1666DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3001121PMC
September 2010

The completion of the Mammalian Gene Collection (MGC).

Authors:
Gary Temple Daniela S Gerhard Rebekah Rasooly Elise A Feingold Peter J Good Cristen Robinson Allison Mandich Jeffrey G Derge Jeanne Lewis Debonny Shoaf Francis S Collins Wonhee Jang Lukas Wagner Carolyn M Shenmen Leonie Misquitta Carl F Schaefer Kenneth H Buetow Tom I Bonner Linda Yankie Ming Ward Lon Phan Alex Astashyn Garth Brown Catherine Farrell Jennifer Hart Melissa Landrum Bonnie L Maidak Michael Murphy Terence Murphy Bhanu Rajput Lillian Riddick David Webb Janet Weber Wendy Wu Kim D Pruitt Donna Maglott Adam Siepel Brona Brejova Mark Diekhans Rachel Harte Robert Baertsch Jim Kent David Haussler Michael Brent Laura Langton Charles L G Comstock Michael Stevens Chaochun Wei Marijke J van Baren Kourosh Salehi-Ashtiani Ryan R Murray Lila Ghamsari Elizabeth Mello Chenwei Lin Christa Pennacchio Kirsten Schreiber Nicole Shapiro Amber Marsh Elizabeth Pardes Troy Moore Anita Lebeau Mike Muratet Blake Simmons David Kloske Stephanie Sieja James Hudson Praveen Sethupathy Michael Brownstein Narayan Bhat Joseph Lazar Howard Jacob Chris E Gruber Mark R Smith John McPherson Angela M Garcia Preethi H Gunaratne Jiaqian Wu Donna Muzny Richard A Gibbs Alice C Young Gerard G Bouffard Robert W Blakesley Jim Mullikin Eric D Green Mark C Dickson Alex C Rodriguez Jane Grimwood Jeremy Schmutz Richard M Myers Martin Hirst Thomas Zeng Kane Tse Michelle Moksa Merinda Deng Kevin Ma Diana Mah Johnson Pang Greg Taylor Eric Chuah Athena Deng Keith Fichter Anne Go Stephanie Lee Jing Wang Malachi Griffith Ryan Morin Richard A Moore Michael Mayo Sarah Munro Susan Wagner Steven J M Jones Robert A Holt Marco A Marra Sun Lu Shuwei Yang James Hartigan Marcus Graf Ralf Wagner Stanley Letovksy Jacqueline C Pulido Keith Robison Dominic Esposito James Hartley Vanessa E Wall Ralph F Hopkins Osamu Ohara Stefan Wiemann

Infrastructure for a learning health care system: CaBIG.

Health Aff (Millwood) 2009 May-Jun;28(3):923-4; author reply 924-5

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http://dx.doi.org/10.1377/hlthaff.28.3.923-aDOI Listing
August 2009

Enabling personalized medicine through an interoperable IT infrastructure: an overview of the cancer Biomedical Informatics Grid.

Authors:
Kenneth H Buetow

Per Med 2009 Jul;6(4):439-448

NCI Center for Biomedical Informatics & Information Technology (NCICBIIT), 2115 E Jefferson St, Suite 6000, Rockville, MD 20852, USA.

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https://www.futuremedicine.com/doi/10.2217/pme.09.18
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http://dx.doi.org/10.2217/pme.09.18DOI Listing
July 2009

An infrastructure for interconnecting research institutions.

Authors:
Kenneth H Buetow

Drug Discov Today 2009 Jun 1;14(11-12):605-10. Epub 2009 Apr 1.

Center for Bioinformatics and Information Technology, National Cancer Institute, Rockville, MD 20852, USA.

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http://dx.doi.org/10.1016/j.drudis.2009.03.011DOI Listing
June 2009

PID: the Pathway Interaction Database.

Nucleic Acids Res 2009 Jan 2;37(Database issue):D674-9. Epub 2008 Oct 2.

National Cancer Institute, Center for Biomedical Informatics and Information Technology, Rockville MD, USA.

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http://dx.doi.org/10.1093/nar/gkn653DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686461PMC
January 2009

Superposition of transcriptional behaviors determines gene state.

PLoS One 2008 Aug 6;3(8):e2901. Epub 2008 Aug 6.

Center for Biomedical Informatics and Information Technology, National Cancer Institute, National Institutes of Health, Rockville, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0002901PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2488367PMC
August 2008

Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB).

Genome Res 2007 Jul 24;17(7):1111-7. Epub 2007 May 24.

Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.5963407
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http://dx.doi.org/10.1101/gr.5963407DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1899122PMC
July 2007

Identification of key processes underlying cancer phenotypes using biologic pathway analysis.

PLoS One 2007 May 9;2(5):e425. Epub 2007 May 9.

National Cancer Institute Center for Bioinformatics, Rockville, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000425PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1855990PMC
May 2007

Allele-specific chromatin immunoprecipitation studies show genetic influence on chromatin state in human genome.

PLoS Genet 2007 May;3(5):e81

Laboratory of Population Genetics, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.0030081DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1868950PMC
May 2007

SNPdetector: a software tool for sensitive and accurate SNP detection.

PLoS Comput Biol 2005 Oct 28;1(5):e53. Epub 2005 Oct 28.

Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.0010053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1274293PMC
October 2005

ATG deserts define a novel core promoter subclass.

Genome Res 2005 Sep 18;15(9):1189-97. Epub 2005 Aug 18.

Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.

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http://dx.doi.org/10.1101/gr.3873705DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1199533PMC
September 2005

Cyberinfrastructure: empowering a "third way" in biomedical research.

Authors:
Kenneth H Buetow

Science 2005 May;308(5723):821-4

National Cancer Institute Center for Bioinformatics, National Institutes of Health, Rockville, MD 20892, USA.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1112120
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http://dx.doi.org/10.1126/science.1112120DOI Listing
May 2005

Genome-wide association study in esophageal cancer using GeneChip mapping 10K array.

Cancer Res 2005 Apr;65(7):2542-6

Cancer Prevention Studies Branch, Laboratory of Population Genetics, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland 20892, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-04-3247DOI Listing
April 2005

Detecting false expression signals in high-density oligonucleotide arrays by an in silico approach.

Genomics 2005 Mar;85(3):297-308

Laboratory of Population Genetics, National Cancer Institute/National Institutes of Health, 8424 Helgerman Court, Room 101, MSC 8302, Bethesda, MD 20892-8302, USA.

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http://dx.doi.org/10.1016/j.ygeno.2004.11.004DOI Listing
March 2005

Hemochromatosis gene mutations and distal adenomatous colorectal polyps.

Cancer Epidemiol Biomarkers Prev 2005 Jan;14(1):158-63

Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Department of Health and Human Services, EPS-7060, 6120 Executive Boulevard, Rockville, MD 20852-7234, USA.

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January 2005

A computational approach to measuring coherence of gene expression in pathways.

Genomics 2004 Jul;84(1):211-7

Laboratory of Population Genetics, National Cancer Institute, 41 Library Drive, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/j.ygeno.2004.01.007DOI Listing
July 2004

Large-scale analysis of non-synonymous coding region single nucleotide polymorphisms.

Bioinformatics 2004 May 29;20(7):1006-14. Epub 2004 Jan 29.

Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bth029DOI Listing
May 2004

Bioinformatics tools for single nucleotide polymorphism discovery and analysis.

Ann N Y Acad Sci 2004 May;1020:101-9

Laboratory of Population Genetics, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1196/annals.1310.011DOI Listing
May 2004

The NCI Center for Bioinformatics (NCICB): building a foundation for in silico biomedical research.

Authors:
Kenneth H Buetow

Cancer Invest 2004 ;22(1):117-22

National Cancer Institute, Center for Bioinformatics, 6116 Executive Blvd., Bethesda, MD 20892-9692, USA.

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http://dx.doi.org/10.1081/cnv-120027586DOI Listing
April 2004

Comparative sequence analysis of imprinted genes between human and mouse to reveal imprinting signatures.

Genomics 2004 Mar;83(3):395-401

Laboratory of Population Genetics, National Cancer Institute, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/j.ygeno.2003.09.007DOI Listing
March 2004

Direct ampholyte-free liquid-phase isoelectric peptide focusing: application to the human serum proteome.

Electrophoresis 2004 Jan;25(1):128-33

Laboratory of Proteomics and Analytical Technologies, National Cancer Institute at Frederick, SAIC-Frederick, Frederick, MD 21702, USA.

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http://dx.doi.org/10.1002/elps.200305700DOI Listing
January 2004

caCORE: a common infrastructure for cancer informatics.

Bioinformatics 2003 Dec;19(18):2404-12

National Cancer Institute Center for Bioinformatics, National Institutes of Health, U.S. Department of Health and Human Services, 6116 Executive Boulevard, Suite 403, Rockville MD 20852, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg335DOI Listing
December 2003

Genomewide distribution of high-frequency, completely mismatching SNP haplotype pairs observed to be common across human populations.

Am J Hum Genet 2003 Nov 14;73(5):1073-81. Epub 2003 Oct 14.

Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-8302, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1180487PMC
http://dx.doi.org/10.1086/379154DOI Listing
November 2003

Genetic susceptibility and dietary patterns in lung cancer.

Lung Cancer 2003 Sep;41(3):269-81

Laboratory of Population Genetics, Center for Cancer Research, National Cancer Institute, NIH, DHHS, Bethesda, MD, USA.

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http://dx.doi.org/10.1016/s0169-5002(03)00238-1DOI Listing
September 2003

Allelic variation in gene expression is common in the human genome.

Genome Res 2003 Aug;13(8):1855-62

Laboratory of Population Genetics, National Cancer Institute, Bethesda, Maryland 20892, USA.

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http://dx.doi.org/10.1101/gr.1006603DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC403776PMC
August 2003

Susceptibility to aflatoxin B1-related primary hepatocellular carcinoma in mice and humans.

Cancer Res 2003 Aug;63(15):4594-601

Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH/DHHS, 6120 Executive Boulevard, Bethesda, MD 20892, USA.

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August 2003

A genome scan of 18 families with chronic lymphocytic leukaemia.

Br J Haematol 2003 Jun;121(6):866-73

Genetic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute/NIH, 6120 Executive Boulevard, Room 7008, MSC 7236, Bethesda, MD 20892-7236, USA.

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http://dx.doi.org/10.1046/j.1365-2141.2003.04372.xDOI Listing
June 2003

Genotypic and phenotypic characterization of a putative tumor susceptibility gene, GNMT, in liver cancer.

Cancer Res 2003 Feb;63(3):647-54

Laboratory of Population Genetics, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.

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February 2003

Computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer.

Cancer Res 2003 Feb;63(3):655-7

Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Gaithersburg, Maryland 20877,USA.

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February 2003

Multiple cross and inbred strain haplotype mapping of complex-trait candidate genes.

Genome Res 2003 Jan;13(1):118-21

Laboratory of Population Genetics, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.

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http://dx.doi.org/10.1101/gr.786403DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC430946PMC
January 2003

A phylogenetic analysis identifies heterogeneity among hepatocellular carcinomas.

Hepatology 2002 Dec;36(6):1341-8

Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, USA.

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http://dx.doi.org/10.1053/jhep.2002.37261DOI Listing
December 2002

The cancer genome anatomy project: online resources to reveal the molecular signatures of cancer.

Cancer Invest 2002 ;20(7-8):1038-50

National Cancer Institute, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1081/cnv-120005922DOI Listing
December 2002

HapScope: a software system for automated and visual analysis of functionally annotated haplotypes.

Nucleic Acids Res 2002 Dec;30(23):5213-21

Laboratory of Population Genetics, National Cancer Institute/National Institutes of Health, 8424 Helgerman Court, Room 101, MSC 8302, Bethesda, MD 20892-8302, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC137968PMC
http://dx.doi.org/10.1093/nar/gkf654DOI Listing
December 2002

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Proc Natl Acad Sci U S A 2002 Dec 11;99(26):16899-903. Epub 2002 Dec 11.

National Cancer Institute, Bethessda, MD 20892-2580, USA.

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http://dx.doi.org/10.1073/pnas.242603899DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC139241PMC
December 2002

Cancer Molecular Analysis Project: weaving a rich cancer research tapestry.

Cancer Cell 2002 May;1(4):315-8

National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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May 2002