Kenneth Bryan

Kenneth Bryan

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Kenneth Bryan

Kenneth Bryan

Publications by authors named "Kenneth Bryan"

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Refinement of Global Domestic Horse Biogeography Using Historic Landrace Chinese Mongolian Populations.

J Hered 2019 Oct 19. Epub 2019 Oct 19.

UCD School of Agriculture and Food Science, University College Dublin, Belfield, Dublin, Ireland.

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http://dx.doi.org/10.1093/jhered/esz032DOI Listing
October 2019

A comparative analysis of the transcriptome profiles of liver and muscle tissue in pigs divergent for feed efficiency.

BMC Genomics 2019 Jun 6;20(1):461. Epub 2019 Jun 6.

School of Veterinary Medicine, University College Dublin, Belfield, Dublin 4, Ireland.

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http://dx.doi.org/10.1186/s12864-019-5740-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6555042PMC
June 2019

Interactome analysis of transforming growth factor-β-activated kinase 1 in -infected cells revealed novel regulators tripartite motif 28 and CDC37.

Oncotarget 2018 Mar 21;9(18):14366-14381. Epub 2018 Feb 21.

Institute of Experimental Internal Medicine, Otto von Guericke University, Magdeburg 39120, Germany.

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http://dx.doi.org/10.18632/oncotarget.24544DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5865676PMC
March 2018

DyNet: visualization and analysis of dynamic molecular interaction networks.

Bioinformatics 2016 09 3;32(17):2713-5. Epub 2016 May 3.

EMBL Australia Biomedical Informatics Group, Infection and Immunity Theme, South Australian Medical and Health Research Institute, North Terrace, Adelaide, South Australia 5000, Australia School of Medicine, Flinders University, Bedford Park, South Australia 5042, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btw187DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5013899PMC
September 2016

Contextual Hub Analysis Tool (CHAT): A Cytoscape app for identifying contextually relevant hubs in biological networks.

F1000Res 2016 19;5:1745. Epub 2016 Jul 19.

EMBL Australia Biomedical Informatics Group, Infection & Immunity Theme, South Australian Medical and Health Research Institute, Adelaide, Australia; School of Medicine, Flinders University, Bedford Park, Australia.

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http://dx.doi.org/10.12688/f1000research.9118.2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5105880PMC
July 2016

HiQuant: Rapid Postquantification Analysis of Large-Scale MS-Generated Proteomics Data.

J Proteome Res 2016 06 16;15(6):2072-9. Epub 2016 May 16.

EMBL Australia Biomedical Informatics Group, Infection & Immunity Theme, South Australian Health and Medical Research Institute , North Terrace, Adelaide, South Australia 5000, Australia.

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http://dx.doi.org/10.1021/acs.jproteome.5b01008DOI Listing
June 2016

Using biological networks to integrate, visualize and analyze genomics data.

Genet Sel Evol 2016 Mar 31;48:27. Epub 2016 Mar 31.

EMBL Australia Group, Infection and Immunity, South Australian Health and Medical Research Institute (SAHMRI), North Terrace, Adelaide, SA, 5000, Australia.

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http://gsejournal.biomedcentral.com/articles/10.1186/s12711-
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http://dx.doi.org/10.1186/s12711-016-0205-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4818439PMC
March 2016

CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization.

Database (Oxford) 2015 7;2015:bav041. Epub 2015 May 7.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada, EMBL Australia Group, South Australian Health and Medical Research Institute, Adelaide, SA 5000, Australia and School of Medicine, Flinders University, Bedford Park, SA 5042, Australia Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada, EMBL Australia Group, South Australian Health and Medical Research Institute, Adelaide, SA 5000, Australia and School of Medicine, Flinders University, Bedford Park, SA 5042, Australia

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http://dx.doi.org/10.1093/database/bav041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4423409PMC
December 2015

Discovery and visualization of miRNA-mRNA functional modules within integrated data using bicluster analysis.

Nucleic Acids Res 2014 Feb 18;42(3):e17. Epub 2013 Dec 18.

Department of Molecular and Cellular Therapeutics, Royal College of Surgeons in Ireland, York House, York Street, Dublin 2, Ireland, National Children's Research Centre, Our Lady's Children's Hospital, Crumlin, Dublin 12, Ireland and Department of Oncogenomics, Academic Medical Center, University of Amsterdam, 1100 DE Amsterdam, The Netherlands.

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http://dx.doi.org/10.1093/nar/gkt1318DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3919560PMC
February 2014

MicroRNA regulation of bovine monocyte inflammatory and metabolic networks in an in vivo infection model.

G3 (Bethesda) 2014 Jan 27;4(6):957-71. Epub 2014 Jan 27.

Animal and Bioscience Research Department, Animal and Grassland Research and Innovation Centre, Teagasc, Grange, Dunsany, County Meath, Ireland

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http://dx.doi.org/10.1534/g3.113.009936DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4065264PMC
January 2014

MiR-137 functions as a tumor suppressor in neuroblastoma by downregulating KDM1A.

Int J Cancer 2013 Sep 7;133(5):1064-73. Epub 2013 Mar 7.

Department of Pediatric Oncology and Hematology, University Children's Hospital Essen, Essen, Germany.

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http://dx.doi.org/10.1002/ijc.28091DOI Listing
September 2013

Expressional alterations in functional ultra-conserved non-coding RNAs in response to all-trans retinoic acid--induced differentiation in neuroblastoma cells.

BMC Cancer 2013 Apr 8;13:184. Epub 2013 Apr 8.

Cancer Genetics, Department of Molecular & Cellular Therapeutics, Royal College of Surgeons in Ireland, Dublin, Ireland.

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http://dx.doi.org/10.1186/1471-2407-13-184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3626850PMC
April 2013

Dissection of the oncogenic MYCN transcriptional network reveals a large set of clinically relevant cell cycle genes as drivers of neuroblastoma tumorigenesis.

Mol Carcinog 2011 Jun 28;50(6):403-11. Epub 2010 Dec 28.

Departments of Cancer Genetics, Royal College of Surgeons in Ireland, York House, Dublin, Ireland.

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http://dx.doi.org/10.1002/mc.20722DOI Listing
June 2011

MicroRNA-542-5p as a novel tumor suppressor in neuroblastoma.

Cancer Lett 2011 Apr;303(1):56-64

Department of Cancer Genetics, Royal College of Surgeons in Ireland, York House, York Street, Dublin 2, Ireland.

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http://dx.doi.org/10.1016/j.canlet.2011.01.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3057396PMC
April 2011

Therapeutic targeting of miRNAs in neuroblastoma.

Expert Opin Ther Targets 2010 Sep;14(9):951-62

Royal College of Surgeons in Ireland, Dublin, Ireland.

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http://dx.doi.org/10.1517/14728222.2010.510136DOI Listing
September 2010

MicroRNA-184 inhibits neuroblastoma cell survival through targeting the serine/threonine kinase AKT2.

Mol Cancer 2010 Apr 21;9:83. Epub 2010 Apr 21.

Department of Cancer Genetics, Royal College of Surgeons in Ireland, York House, York Street, Dublin 2, Ireland.

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http://dx.doi.org/10.1186/1476-4598-9-83DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2864218PMC
April 2010

MetaFIND: a feature analysis tool for metabolomics data.

BMC Bioinformatics 2008 Nov 5;9:470. Epub 2008 Nov 5.

Complex & Adaptive Systems Laboratory (CASL), University College Dublin, Ireland.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
Publisher Site
http://dx.doi.org/10.1186/1471-2105-9-470DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2655093PMC
November 2008

Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data.

BMC Genomics 2008 Sep 16;9 Suppl 2:S20. Epub 2008 Sep 16.

Complex and Adaptive Systems Laboratory, University College Dublin, Belfield, Dublin 4, Ireland.

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http://dx.doi.org/10.1186/1471-2164-9-S2-S20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2559885PMC
September 2008

Application of simulated annealing to the biclustering of gene expression data.

IEEE Trans Inf Technol Biomed 2006 Jul;10(3):519-25

The Machine Learning Group, Faculty of Computer Science, Trinity College Dublin, Ireland.

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July 2006