Ken Youens-Clark

Ken Youens-Clark

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Ken Youens-Clark

Ken Youens-Clark

Publications by authors named "Ken Youens-Clark"

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18Publications

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Erratum to: iMicrobe: Tools and data-driven discovery platform for the microbiome sciences.

Gigascience 2019 Aug;8(8)

Department of Biosystems Engineering, University of Arizona, 1177 E. 4th St, Shantz Building, Room 403, Tucson, AZ, USA 85721-0038.

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http://dx.doi.org/10.1093/gigascience/giz097DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6675616PMC
August 2019

iMicrobe: Tools and data-dreaiven discovery platform for the microbiome sciences.

Gigascience 2019 07;8(7)

Department of Biosystems Engineering, University of Arizona, 1177 E. 4th St, Shantz Building, Room 403, Tucson, AZ, USA 85721-0038.

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http://dx.doi.org/10.1093/gigascience/giz083DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6615980PMC
July 2019

Libra: scalable k-mer-based tool for massive all-vs-all metagenome comparisons.

Gigascience 2019 02 1;8(2). Epub 2019 Feb 1.

Department of Biosystems Engineering, University of Arizona, 1177 E. 4th Street, Tucson, Arizona, 85721, USA.

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http://dx.doi.org/10.1093/gigascience/giy165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6354030PMC
February 2019

Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.

Methods Mol Biol 2016 ;1374:141-63

Cold Spring Harbor Laboratory, One Bungtown Road, Cold Spring Harbor, NY, 11724, USA.

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http://dx.doi.org/10.1007/978-1-4939-3167-5_7DOI Listing
May 2016

Computational prospecting the great viral unknown.

FEMS Microbiol Lett 2016 05 29;363(10). Epub 2016 Mar 29.

Department of Agricultural and Biosystems Engineering, University of Arizona, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1093/femsle/fnw077DOI Listing
May 2016

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Authors:
Damian Smedley Syed Haider Steffen Durinck Luca Pandini Paolo Provero James Allen Olivier Arnaiz Mohammad Hamza Awedh Richard Baldock Giulia Barbiera Philippe Bardou Tim Beck Andrew Blake Merideth Bonierbale Anthony J Brookes Gabriele Bucci Iwan Buetti Sarah Burge Cédric Cabau Joseph W Carlson Claude Chelala Charalambos Chrysostomou Davide Cittaro Olivier Collin Raul Cordova Rosalind J Cutts Erik Dassi Alex Di Genova Anis Djari Anthony Esposito Heather Estrella Eduardo Eyras Julio Fernandez-Banet Simon Forbes Robert C Free Takatomo Fujisawa Emanuela Gadaleta Jose M Garcia-Manteiga David Goodstein Kristian Gray José Afonso Guerra-Assunção Bernard Haggarty Dong-Jin Han Byung Woo Han Todd Harris Jayson Harshbarger Robert K Hastings Richard D Hayes Claire Hoede Shen Hu Zhi-Liang Hu Lucie Hutchins Zhengyan Kan Hideya Kawaji Aminah Keliet Arnaud Kerhornou Sunghoon Kim Rhoda Kinsella Christophe Klopp Lei Kong Daniel Lawson Dejan Lazarevic Ji-Hyun Lee Thomas Letellier Chuan-Yun Li Pietro Lio Chu-Jun Liu Jie Luo Alejandro Maass Jerome Mariette Thomas Maurel Stefania Merella Azza Mostafa Mohamed Francois Moreews Ibounyamine Nabihoudine Nelson Ndegwa Céline Noirot Cristian Perez-Llamas Michael Primig Alessandro Quattrone Hadi Quesneville Davide Rambaldi James Reecy Michela Riba Steven Rosanoff Amna Ali Saddiq Elisa Salas Olivier Sallou Rebecca Shepherd Reinhard Simon Linda Sperling William Spooner Daniel M Staines Delphine Steinbach Kevin Stone Elia Stupka Jon W Teague Abu Z Dayem Ullah Jun Wang Doreen Ware Marie Wong-Erasmus Ken Youens-Clark Amonida Zadissa Shi-Jian Zhang Arek Kasprzyk

Nucleic Acids Res 2015 Jul 20;43(W1):W589-98. Epub 2015 Apr 20.

Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

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http://dx.doi.org/10.1093/nar/gkv350DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489294PMC
July 2015

Ensembl Genomes 2013: scaling up access to genome-wide data.

Nucleic Acids Res 2014 Jan 25;42(Database issue):D546-52. Epub 2013 Oct 25.

The European Molecular Biology Laboratory, The European Bioinformatics Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK, Wellcome Trust Sanger Centre, The Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, UK, Cold Spring Harbor Laboratory, 1 Bungtown Rd, Cold Spring Harbor, NY 11724, USA and USDA-ARS, Cornell University, Ithaca, NY, 14853, USA.

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http://dx.doi.org/10.1093/nar/gkt979DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965094PMC
January 2014

Gramene 2013: comparative plant genomics resources.

Nucleic Acids Res 2014 Jan 11;42(Database issue):D1193-9. Epub 2013 Nov 11.

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA, Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA, EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK, Informatics and Bio-computing Program, Ontario Institute of Cancer Research, Toronto M5G 1L7, Canada, Department of Biochemistry & Molecular Pharmacology, NYU School of Medicine, New York, NY 10016, USA and NAA Plant, Soil & Nutrition Laboratory Research Unit, USDA-ARS, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1093/nar/gkt1110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964986PMC
January 2014

Sequencing and de novo transcriptome assembly of Brachypodium sylvaticum (Poaceae).

Appl Plant Sci 2013 Mar 5;1(3). Epub 2013 Mar 5.

Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, 2082 Cordley Hall, Oregon State University, Corvallis, Oregon 97331 USA.

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http://dx.doi.org/10.3732/apps.1200011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105277PMC
March 2013

GrameneMart: the BioMart data portal for the Gramene project.

Database (Oxford) 2012 28;2012:bar056. Epub 2012 Feb 28.

Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.

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http://dx.doi.org/10.1093/database/bar056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3289142PMC
June 2012

CMap 1.01: a comparative mapping application for the Internet.

Bioinformatics 2009 Nov 30;25(22):3040-2. Epub 2009 Jul 30.

Cold Spring Harbor Laboratories, Cold Spring Harbor, NY 11724, USA.

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http://dx.doi.org/10.1093/bioinformatics/btp458DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2773250PMC
November 2009

Gramene QTL database: development, content and applications.

Database (Oxford) 2009 8;2009:bap005. Epub 2009 May 8.

Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.

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http://dx.doi.org/10.1093/database/bap005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2790302PMC
May 2009