Keith A Baggerly

Keith A Baggerly

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Keith A Baggerly

Publications by authors named "Keith A Baggerly"

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Refining statistics clarifies leukaemic stem cell genomics.

Br J Haematol 2019 Jun 26;185(5):1005-1007. Epub 2018 Nov 26.

Department of Leukemia, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1111/bjh.15697DOI Listing
June 2019

Pan-cancer genomic analysis links 3'UTR DNA methylation with increased gene expression in T cells.

EBioMedicine 2019 May 2;43:127-137. Epub 2019 May 2.

Department of Gynecologic Oncology and Reproductive Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Department of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Center for RNA Interference and Non-Coding RNA, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ebiom.2019.04.045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6558231PMC
May 2019

Defining Survivorship Trajectories Across Patients With Solid Tumors: An Evidence-Based Approach.

JAMA Oncol 2018 11;4(11):1519-1526

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston.

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http://dx.doi.org/10.1001/jamaoncol.2018.2761DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6248088PMC
November 2018

Surface PD-L1, E-cadherin, CD24, and VEGFR2 as markers of epithelial cancer stem cells associated with rapid tumorigenesis.

Sci Rep 2017 08 29;7(1):9602. Epub 2017 Aug 29.

Department of Urology, The University of Texas MD Anderson Cancer Center, Houston, Texas, 77030, USA.

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http://dx.doi.org/10.1038/s41598-017-08796-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5575243PMC
August 2017

Immune cell profiling in cancer: molecular approaches to cell-specific identification.

NPJ Precis Oncol 2017 15;1(1):26. Epub 2017 Aug 15.

1Department of Gynecologic Oncology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd, Houston, Texas 77030 USA.

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http://dx.doi.org/10.1038/s41698-017-0031-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5871917PMC
August 2017

Functional CAR models for large spatially correlated functional datasets.

J Am Stat Assoc 2016 18;111(514):772-786. Epub 2016 Aug 18.

The University of Texas M.D. Anderson Cancer Center, Houston, Texas, U.S.A.

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http://dx.doi.org/10.1080/01621459.2015.1042581DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5176110PMC
August 2016

Optimized Prediction of Extreme Treatment Outcomes in Ovarian Cancer.

Cancer Inform 2015 21;14(Suppl 5):45-55. Epub 2016 Mar 21.

Cecil and Ida Green Chair in Systems Biology Science, Erik Jonsson School of Engineering and Computer Science, University of Texas at Dallas, Richardson, TX, USA.

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http://dx.doi.org/10.4137/CIN.S30803DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4806766PMC
April 2016

Role of Increased n-acetylaspartate Levels in Cancer.

J Natl Cancer Inst 2016 Jan 26;108(6):djv426. Epub 2016 Jan 26.

Departments of Gynecologic Oncology and Reproductive Medicine (BZ, RAP, RR, TM, ASN, HJD, WH, CI, SYW, KMG, SP, LSM, AMN, GAP, AKS), Cancer Systems Imaging (NMZ, CRM, PKB), Biostatistics (MG), Cancer Medicine (CVP), Center for RNA Interference and Non-Coding RNA (CI, LSM, CRA, GLB, AKS), Cancer Biology (YS, MBE, GLB, AKS), Experimental Therapeutics (CRA, GLB), Bioinformatics and Computational Biology (YW, KAB), Melanoma Medical Oncology (MAD), and Pathology (JL), University of Texas M. D. Anderson Cancer Center, Houston, TX; Department of Nanomedicine and Bioengineering, UT Health, Houston, TX (GLB, AKS); Departments of Psychology, Urology, and Obstetrics and Gynecology, the University of Iowa, Iowa City, IA (SKL); Laboratory for Systems Biology of Human Diseases (LY, JB, AA, DN), Department of Chemical and Biomolecular Engineering (LY, JB, AA, DN), and Department of Bioengineering (DN), Rice University, Houston, TX.

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http://dx.doi.org/10.1093/jnci/djv426DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4849357PMC
January 2016

Clinically relevant microRNAs in ovarian cancer.

Mol Cancer Res 2015 Mar 10;13(3):393-401. Epub 2014 Oct 10.

Department of Experimental Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1158/1541-7786.MCR-14-0424DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4369176PMC
March 2015

BRCA2 inhibition enhances cisplatin-mediated alterations in tumor cell proliferation, metabolism, and metastasis.

Mol Oncol 2014 Dec 6;8(8):1429-40. Epub 2014 Jun 6.

Department of Microbiology and Immunology, Western University, London, Ontario, Canada; Department of Oncology, Western University, London, Ontario, Canada; Department of Pathology, Western University, London, Ontario, Canada; Department of Physiology and Pharmacology, Western University, London, Ontario, Canada; Lawson Health Research Institute, London Health Sciences Centre, London, Ontario, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.molonc.2014.05.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5528603PMC
December 2014

Reverse-phase protein array for prediction of patients at low risk of developing bone metastasis from breast cancer.

Oncologist 2014 Sep 12;19(9):909-14. Epub 2014 Aug 12.

Departments of Breast Medical Oncology, Bioinformatics and Computational Biology, and Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA; Department of Breast Surgical Oncology, St. Luke's International Hospital, Tokyo, Japan; Department of Surgery, Division of Breast Surgical Oncology, The Showa University School of Medicine, Tokyo, Japan

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http://dx.doi.org/10.1634/theoncologist.2014-0099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4153464PMC
September 2014

Focal adhesion kinase: an alternative focus for anti-angiogenesis therapy in ovarian cancer.

Cancer Biol Ther 2014 Jul 23;15(7):919-29. Epub 2014 Apr 23.

Department of Gynecologic Oncology; The University of Texas M.D. Anderson Cancer Center; Houston, TX USA; Department of Cancer Biology; The University of Texas M.D. Anderson Cancer Center; Houston, TX USA.

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http://dx.doi.org/10.4161/cbt.28882DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4100993PMC
July 2014

Notch3 pathway alterations in ovarian cancer.

Cancer Res 2014 Jun 17;74(12):3282-93. Epub 2014 Apr 17.

Authors' Affiliations: Departments of Gynecologic Oncology and Reproductive Medicine, Systems Biology, Pathology, Experimental Therapeutics, Bioinformatics and Computational Biology, Cancer Biology, Thoracic/Head and Neck Medical Oncology, and The Center for RNA Interference and Non-Coding RNA, The University of Texas MD Anderson Cancer Center, Houston, TexasAuthors' Affiliations: Departments of Gynecologic Oncology and Reproductive Medicine, Systems Biology, Pathology, Experimental Therapeutics, Bioinformatics and Computational Biology, Cancer Biology, Thoracic/Head and Neck Medical Oncology, and The Center for RNA Interference and Non-Coding RNA, The University of Texas MD Anderson Cancer Center, Houston, TexasAuthors' Affiliations: Departments of Gynecologic Oncology and Reproductive Medicine, Systems Biology, Pathology, Experimental Therapeutics, Bioinformatics and Computational Biology, Cancer Biology, Thoracic/Head and Neck Medical Oncology, and The Center for RNA Interference and Non-Coding RNA, The University of Texas MD Anderson Cancer Center, Houston, Texas

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http://dx.doi.org/10.1158/0008-5472.CAN-13-2066DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4058356PMC
June 2014

Molecular biomarkers of residual disease after surgical debulking of high-grade serous ovarian cancer.

Clin Cancer Res 2014 Jun 22;20(12):3280-8. Epub 2014 Apr 22.

Authors' Affiliations: Departments of Bioinformatics and Computational Biology, Gynecologic Oncology and Reproductive Medicine, Experimental Therapeutics, Cancer Biology, and Center for RNA Interference and Non-Coding RNA, The University of Texas MD Anderson Cancer Center, Houston, Texas; and Fred Hutchinson Cancer Research Center, Seattle, WashingtonAuthors' Affiliations: Departments of Bioinformatics and Computational Biology, Gynecologic Oncology and Reproductive Medicine, Experimental Therapeutics, Cancer Biology, and Center for RNA Interference and Non-Coding RNA, The University of Texas MD Anderson Cancer Center, Houston, Texas; and Fred Hutchinson Cancer Research Center, Seattle, WashingtonAuthors' Affiliations: Departments of Bioinformatics and Computational Biology, Gynecologic Oncology and Reproductive Medicine, Experimental Therapeutics, Cancer Biology, and Center for RNA Interference and Non-Coding RNA, The University of Texas MD Anderson Cancer Center, Houston, Texas; and Fred Hutchinson Cancer Research Center, Seattle, Washington

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http://clincancerres.aacrjournals.org/cgi/doi/10.1158/1078-0
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http://dx.doi.org/10.1158/1078-0432.CCR-14-0445DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062703PMC
June 2014

illuminaio: An open source IDAT parsing tool for Illumina microarrays.

F1000Res 2013 4;2:264. Epub 2013 Dec 4.

McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA ; Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.12688/f1000research.2-264.v1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3968891PMC
April 2014

Preclinical and early clinical evaluation of the oral AKT inhibitor, MK-2206, for the treatment of acute myelogenous leukemia.

Clin Cancer Res 2014 Apr 28;20(8):2226-35. Epub 2014 Feb 28.

Authors' Affiliations: Department of Leukemia; Division of Quantitative Sciences, The University of Texas MD Anderson Cancer Center, Houston, Texas; Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington; Division of Hematology/Department of Medicine; Department of Epidemiology, University of Washington, Seattle, Washington; and National Cancer Institute, Rockville, Maryland.

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http://clincancerres.aacrjournals.org/cgi/doi/10.1158/1078-0
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http://dx.doi.org/10.1158/1078-0432.CCR-13-1978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3989412PMC
April 2014

Most expression and splicing changes in myotonic dystrophy type 1 and type 2 skeletal muscle are shared with other muscular dystrophies.

Neuromuscul Disord 2014 Mar 15;24(3):227-40. Epub 2013 Nov 15.

Department of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX, USA; Graduate Programs in Human & Molecular Genetics, University of Texas at Houston Graduate School in Biomedical Sciences, Houston, TX, USA; Graduate Programs in Genes & Development, University of Texas at Houston Graduate School in Biomedical Sciences, Houston, TX, USA. Electronic address:

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http://dx.doi.org/10.1016/j.nmd.2013.11.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3943873PMC
March 2014

Targeting SRC and tubulin in mucinous ovarian carcinoma.

Clin Cancer Res 2013 Dec 7;19(23):6532-43. Epub 2013 Oct 7.

Authors' Affiliations: Departments of Gynecologic Oncology and Reproductive Medicine, Genitourinary Medical Oncology, Bioinformatics and Computational Biology, and Cancer Biology; Division of Cancer Medicine; Center for RNA Interference and Non-Coding RNA, The University of Texas MD Anderson Cancer Center, Houston, Texas; Kinex Pharmaceuticals LLC, New York State Center of Excellence in Bioinformatics and Life Sciences, Buffalo, New York; Department of General Surgery, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei; Department of Gynecology, Obstetrics and Gynecology, Hospital of Fudan University, Shanghai, P.R. China.

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http://dx.doi.org/10.1158/1078-0432.CCR-13-1305DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852199PMC
December 2013

Differential response to neoadjuvant chemotherapy among 7 triple-negative breast cancer molecular subtypes.

Clin Cancer Res 2013 Oct 15;19(19):5533-40. Epub 2013 Aug 15.

Authors' Affiliations: Morgan Welch Inflammatory Breast Cancer Research Program and Clinic; Departments of Breast Medical Oncology, Bioinformatics and Computational Biology, Pathology, and Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas; and Department of Biochemistry, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee.

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http://dx.doi.org/10.1158/1078-0432.CCR-13-0799DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3813597PMC
October 2013

Independent validation of a model using cell line chemosensitivity to predict response to therapy.

J Natl Cancer Inst 2013 Sep 20;105(17):1284-91. Epub 2013 Aug 20.

Department of Biostatistics, University of Texas MD Anderson Cancer Center, Houston, TX 77230, USA.

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http://dx.doi.org/10.1093/jnci/djt202DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3955959PMC
September 2013

Bisphosphorylated PEA-15 sensitizes ovarian cancer cells to paclitaxel by impairing the microtubule-destabilizing effect of SCLIP.

Mol Cancer Ther 2013 Jun 29;12(6):1099-111. Epub 2013 Mar 29.

Section of Translational Breast Cancer Research, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1158/1535-7163.MCT-12-0737DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3681833PMC
June 2013

Epigenetic analysis of the Notch superfamily in high-grade serous ovarian cancer.

Gynecol Oncol 2013 Mar 28;128(3):506-11. Epub 2012 Nov 28.

Department of Gynecologic Oncology and Reproductive Medicine, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd., Houston, TX 77030, USA.

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http://dx.doi.org/10.1016/j.ygyno.2012.11.029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3645276PMC
March 2013

Surface Adjustment of Reverse Phase Protein Arrays using Positive Control Spots.

Cancer Inform 2012 11;11:77-86. Epub 2012 Apr 11.

Brigham Young University, Department of Statistics, Provo, UT, USA.

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http://dx.doi.org/10.4137/CIN.S9055DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3329188PMC
August 2012

Protein and phosphoprotein levels in glioma and adenocarcinoma cell lines grown in normoxia and hypoxia in monolayer and three-dimensional cultures.

Proteome Sci 2012 Jan 25;10(1). Epub 2012 Jan 25.

Department of Neuro-Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1186/1477-5956-10-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3317865PMC
January 2012

Bias, randomization, and ovarian proteomic data: a reply to "producers and consumers".

Cancer Inform 2005 ;1:9-14

Department of Biostatistics, U.T. M.D. Anderson Cancer Center, Houston, Texas, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2657654PMC
July 2011

Understanding the characteristics of mass spectrometry data through the use of simulation.

Cancer Inform 2005 ;1:41-52

Departments of Biostatistics and Applied Mathematics, University of Texas M.D. Anderson Cancer Center, Houston TX 77030 USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2657656PMC
July 2011

What information should be required to support clinical "omics" publications?

Clin Chem 2011 May;57(5):688-90

Bioinformatics and Computational Biology, University of Texas M.D. Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1373/clinchem.2010.158618DOI Listing
May 2011

Altered MEF2 isoforms in myotonic dystrophy and other neuromuscular disorders.

Muscle Nerve 2010 Dec;42(6):856-63

Department of Genetics, M.D. Anderson Cancer Center, Unit 1010, University of Texas, 1515 Holcombe Boulevard, Houston, Texas 77030-4009, USA.

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http://doi.wiley.com/10.1002/mus.21789
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http://dx.doi.org/10.1002/mus.21789DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136472PMC
December 2010

Blasted cell line names.

Cancer Inform 2010 Oct 14;9:251-5. Epub 2010 Oct 14.

Department of Bioinformatics and Computational Biology, University of Texas M.D. Anderson Cancer Center, Houston, TX, USA.

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http://journals.sagepub.com/doi/10.4137/CIN.S5613
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http://dx.doi.org/10.4137/CIN.S5613DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2978931PMC
October 2010

Statistical contributions to proteomic research.

Methods Mol Biol 2010 ;641:143-66

Department of Biostatistics, The University of Texas M. D. Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1007/978-1-60761-711-2_9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3889133PMC
August 2010

Clinical evaluation of chemotherapy response predictors developed from breast cancer cell lines.

Breast Cancer Res Treat 2010 Jun 15;121(2):301-9. Epub 2009 Jul 15.

Department of Breast Medical Oncology, The University of Texas MD Anderson Cancer Center, BO Box 301439, Houston, TX 77030-1439, USA.

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http://dx.doi.org/10.1007/s10549-009-0445-7DOI Listing
June 2010

Different changes in protein and phosphoprotein levels result from serum starvation of high-grade glioma and adenocarcinoma cell lines.

J Proteome Res 2010 Jan;9(1):179-91

Departments of Neuro-Oncology, Bioinformatics and Computational Biology, and Blood and Marrow Transplantation, Section of Molecular Hematology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77230, USA.

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http://dx.doi.org/10.1021/pr900392bDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3386607PMC
January 2010

Splicing factors PTBP1 and PTBP2 promote proliferation and migration of glioma cell lines.

Brain 2009 Aug 8;132(Pt 8):2277-88. Epub 2009 Jun 8.

Department of Endocrine Neoplasia and Hormonal Disorders, University of Texas, M. D. Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/brain/awp153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2724917PMC
August 2009

Variable slope normalization of reverse phase protein arrays.

Bioinformatics 2009 Jun 31;25(11):1384-9. Epub 2009 Mar 31.

Department of Statistics, Rice University, Houston, TX, USA.

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http://dx.doi.org/10.1093/bioinformatics/btp174DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3968550PMC
June 2009

Molecular signatures of metastasis in head and neck cancer.

Head Neck 2008 Oct;30(10):1273-83

Department of Cancer Genetics, The University of Texas M. D. Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1002/hed.20871DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136479PMC
October 2008

Bayesian analysis of mass spectrometry proteomic data using wavelet-based functional mixed models.

Biometrics 2008 Jun 20;64(2):479-89. Epub 2007 Sep 20.

The University of Texas M.D. Anderson Cancer Center, Houston, Texas 77030-4009, USA.

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http://dx.doi.org/10.1111/j.1541-0420.2007.00895.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2659628PMC
June 2008

Global analysis of aberrant pre-mRNA splicing in glioblastoma using exon expression arrays.

BMC Genomics 2008 May 12;9:216. Epub 2008 May 12.

Department of Endocrine Neoplasia and Hormonal Disorders, University of Texas M, D, Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1186/1471-2164-9-216DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2410136PMC
May 2008

Microarrays: retracing steps.

Nat Med 2007 Nov;13(11):1276-7; author reply 1277-8

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http://dx.doi.org/10.1038/nm1107-1276bDOI Listing
November 2007

Non-parametric quantification of protein lysate arrays.

Bioinformatics 2007 Aug 28;23(15):1986-94. Epub 2007 Jun 28.

Department of Bioinformatics and Computational Biology, University of Texas M.D. Anderson Cancer Center, TX, USA.

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http://dx.doi.org/10.1093/bioinformatics/btm283DOI Listing
August 2007

PrepMS: TOF MS data graphical preprocessing tool.

Bioinformatics 2007 Jan 22;23(2):264-5. Epub 2006 Nov 22.

Department of Biostatistics, Bioinformatics and Epidemiology, Medical University of South Carolina, Charleston, SC 29425, USA.

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http://dx.doi.org/10.1093/bioinformatics/btl583DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2633108PMC
January 2007

Synchronous selection of homing peptides for multiple tissues by in vivo phage display.

FASEB J 2006 May 31;20(7):979-81. Epub 2006 Mar 31.

Department of Genitourinary Medical Oncology, The University of Texas M. D. Anderson Cancer, Houston, Texas, USA.

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http://dx.doi.org/10.1096/fj.05-5186fjeDOI Listing
May 2006

Diagnostic protein discovery using liquid chromatography/mass spectrometry for proteolytic peptide targeting.

Rapid Commun Mass Spectrom 2005 ;19(12):1624-36

Molecular Pathology, University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Blvd., Houston, TX 77030, USA.

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http://dx.doi.org/10.1002/rcm.1963DOI Listing
July 2005

Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum.

Bioinformatics 2005 May 26;21(9):1764-75. Epub 2005 Jan 26.

Department of Biostatistics and Applied Mathematics, The University of Texas MD Anderson Cancer Center, Houston, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bti254DOI Listing
May 2005

Serum proteomics profiling--a young technology begins to mature.

Nat Biotechnol 2005 Mar;23(3):291-2

Section of Bioinformatics, Department of Biostatistics and Applied Mathematics, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Blvd., Box 447, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nbt0305-291DOI Listing
March 2005

Signal in noise: evaluating reported reproducibility of serum proteomic tests for ovarian cancer.

J Natl Cancer Inst 2005 Feb;97(4):307-9

Department of Biostatistics, M.D. Anderson Cancer Center, Houston, TX, USA.

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https://academic.oup.com/jnci/article-lookup/doi/10.1093/jnc
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http://dx.doi.org/10.1093/jnci/dji008DOI Listing
February 2005

The importance of experimental design in proteomic mass spectrometry experiments: some cautionary tales.

Brief Funct Genomic Proteomic 2005 Feb;3(4):322-31

Department of Biostatistics and Applied Mathematics, University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Blvd, Unit 447, Houston, TX 77030-4009, USA.

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http://dx.doi.org/10.1093/bfgp/3.4.322DOI Listing
February 2005

Overdispersed logistic regression for SAGE: modelling multiple groups and covariates.

BMC Bioinformatics 2004 Oct 6;5:144. Epub 2004 Oct 6.

Department of Biostatistics and Applied Mathematics, UT M. D. Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1186/1471-2105-5-144DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC524524PMC
October 2004

Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments.

Bioinformatics 2004 Mar 29;20(5):777-85. Epub 2004 Jan 29.

Department of Biostatistics, U.T. M.D. Anderson Cancer Center, 1515 Holcombe Blvd, Box 447, Houston, TX 77030-4009, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg484DOI Listing
March 2004

Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization.

Clin Chem 2003 Oct;49(10):1615-23

Department of Biostatistics, University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Blvd., Box 447, Houston TX 77030, USA.

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http://dx.doi.org/10.1373/49.10.1615DOI Listing
October 2003

Bayesian shrinkage estimation of the relative abundance of mRNA transcripts using SAGE.

Biometrics 2003 Sep;59(3):476-86

Department of Biostatistics, University of Texas, M. D. Anderson Cancer Center, 1515 Holcombe Blvd., Box 447, Houston, Texas 77030-4009, USA.

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http://dx.doi.org/10.1111/1541-0420.00057DOI Listing
September 2003

Differential expression in SAGE: accounting for normal between-library variation.

Bioinformatics 2003 Aug;19(12):1477-83

Department of Biostatistics, UT M.D. Anderson Cancer Center, 1515 Holcombe Blvd, Box 447, Houston, TX 77030-4009, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg173DOI Listing
August 2003

Identifying and quantifying sources of variation in microarray data using high-density cDNA membrane arrays.

J Comput Biol 2002 ;9(4):655-69

Department of Biostatistics, University of Texas, M.D. Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1089/106652702760277372DOI Listing
April 2003