Kazuyuki Aihara

Kazuyuki Aihara

UNVERIFIED PROFILE

Are you Kazuyuki Aihara?   Register this Author

Register author
Kazuyuki Aihara

Kazuyuki Aihara

Publications by authors named "Kazuyuki Aihara"

Are you Kazuyuki Aihara?   Register this Author

100Publications

991Reads

32Profile Views

Acetylcholine-mediated top-down attention improves the response to bottom-up inputs by deformation of the attractor landscape.

PLoS One 2019 7;14(10):e0223592. Epub 2019 Oct 7.

International Research Center for Neurointelligence (WPI-IRCN), UTIAS, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0223592PLOS
October 2019

Hunt for the tipping point during endocrine resistance process in breast cancer by dynamic network biomarkers.

J Mol Cell Biol 2019 Aug;11(8):649-664

Key Laboratory of Systems Biology, Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/jmcb/mjy059DOI Listing
August 2019

A novel soluble guanylate cyclase activator with reduced risk of hypotension by short-acting vasodilation.

Pharmacol Res Perspect 2019 04 4;7(2):e00463. Epub 2019 Mar 4.

R&D Department TOA EIYO LTD. Tokyo Research Laboratories Saitama Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/prp2.463DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6399102PMC
April 2019

Human photoplethysmogram through the Morse graph: Searching for the saddle point in experimental data.

Chaos 2019 Apr;29(4):043121

Institute of Vegetable and Floriculture Science, National Agriculture and Food Research Organization, Tsukuba, Ibaraki 305-8519, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.5088989DOI Listing
April 2019

Combining multiple forecasts for multivariate time series via state-dependent weighting.

Chaos 2019 Mar;29(3):033128

International Research Center for Neurointelligence (WPI-IRCN), The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.5057379DOI Listing
March 2019

Destabilization of Local Minima in Analog Spin Systems by Correction of Amplitude Heterogeneity.

Phys Rev Lett 2019 Feb;122(4):040607

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
https://link.aps.org/doi/10.1103/PhysRevLett.122.040607
Publisher Site
http://dx.doi.org/10.1103/PhysRevLett.122.040607DOI Listing
February 2019

Randomly distributed embedding making short-term high-dimensional data predictable.

Proc Natl Acad Sci U S A 2018 10 8;115(43):E9994-E10002. Epub 2018 Oct 8.

Key Laboratory of Systems Biology, Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai 200031, China;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1802987115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6205453PMC
October 2018

Bifurcation analysis of a mathematical model of atopic dermatitis to determine patient-specific effects of treatments on dynamic phenotypes.

J Theor Biol 2018 07 3;448:66-79. Epub 2018 Apr 3.

Department of Bioengineering, Imperial College London, London SW7 2AZ, UK. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jtbi.2018.04.002DOI Listing
July 2018

Indolylmaleimide Derivative IM-17 Shows Cardioprotective Effects in Ischemia-Reperfusion Injury.

ACS Med Chem Lett 2018 Mar 29;9(3):182-187. Epub 2018 Jan 29.

RIKEN, Synthetic Organic Chemistry Laboratory, 2-1, Hirosawa, Wako-shi, Saitama 351-0198, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/acsmedchemlett.7b00454DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5846036PMC
March 2018

Personalizing Androgen Suppression for Prostate Cancer Using Mathematical Modeling.

Sci Rep 2018 02 8;8(1):2673. Epub 2018 Feb 8.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo, 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41598-018-20788-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5805696PMC
February 2018

Dimensionless embedding for nonlinear time series analysis.

Phys Rev E 2017 Sep 19;96(3-1):032219. Epub 2017 Sep 19.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevE.96.032219DOI Listing
September 2017

On the limits of probabilistic forecasting in nonlinear time series analysis II: Differential entropy.

Chaos 2017 Aug;27(8):083125

The Institute of Industrial Science, The University of Tokyo, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.4986394DOI Listing
August 2017

Detecting Causality by Combined Use of Multiple Methods: Climate and Brain Examples.

PLoS One 2016 5;11(7):e0158572. Epub 2016 Jul 5.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo, 153-8505, Japan.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0158572PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4933387PMC
July 2017

Parameter Scaling for Epidemic Size in a Spatial Epidemic Model with Mobile Individuals.

PLoS One 2016 14;11(12):e0168127. Epub 2016 Dec 14.

Meiji Institute for Advanced Study of Mathematical Sciences, Meiji University, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168127PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5156435PMC
July 2017

Quantifying critical states of complex diseases using single-sample dynamic network biomarkers.

PLoS Comput Biol 2017 Jul 5;13(7):e1005633. Epub 2017 Jul 5.

Institute of Industrial Science, the University of Tokyo, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1005633DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5517040PMC
July 2017

Task-dependent recurrent dynamics in visual cortex.

Elife 2017 07 24;6. Epub 2017 Jul 24.

National Institute for Physiological Sciences, Okazaki, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7554/eLife.26868DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5544435PMC
July 2017

Hawkes process model with a time-dependent background rate and its application to high-frequency financial data.

Phys Rev E 2017 Jul 5;96(1-1):012303. Epub 2017 Jul 5.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevE.96.012303DOI Listing
July 2017

Balancing specificity, sensitivity, and speed of ligand discrimination by zero-order ultraspecificity.

Phys Rev E 2017 Jul 14;96(1-1):012405. Epub 2017 Jul 14.

Department of Mathematical Informatics, Graduate School of Information Science and Technology, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan and Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-Ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevE.96.012405DOI Listing
July 2017

Elimination of spiral waves in a locally connected chaotic neural network by a dynamic phase space constraint.

Neural Netw 2017 Apr 16;88:9-21. Epub 2017 Jan 16.

Department of Mathematical Informatics, Graduate School of Information Science and Technology, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan; Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.neunet.2017.01.002DOI Listing
April 2017

Smoothing effect for spatially distributed renewable resources and its impact on power grid robustness.

Chaos 2017 03;27(3):033104

Graduate School of Information Science and Technology, The University of Tokyo, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.4977510DOI Listing
March 2017

Bifurcation Analysis on Phase-Amplitude Cross-Frequency Coupling in Neural Networks with Dynamic Synapses.

Front Comput Neurosci 2017 30;11:18. Epub 2017 Mar 30.

Graduate School of Information Science and Technology, The University of TokyoTokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fncom.2017.00018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5371682PMC
March 2017

Combinatorial optimization using dynamical phase transitions in driven-dissipative systems.

Phys Rev E 2017 Feb 14;95(2-1):022118. Epub 2017 Feb 14.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevE.95.022118DOI Listing
February 2017

Robustness and fragility in coupled oscillator networks under targeted attacks.

Phys Rev E 2017 Jan 17;95(1-1):012315. Epub 2017 Jan 17.

Department of Electrical Engineering and Information Systems, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevE.95.012315DOI Listing
January 2017

Personalized characterization of diseases using sample-specific networks.

Nucleic Acids Res 2016 12 4;44(22):e164. Epub 2016 Sep 4.

Key Laboratory of Systems Biology, CAS Center for Excellence in Molecular Cell Science, Innovation Center for Cell Signaling Network, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkw772DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5159538PMC
December 2016

On the limits of probabilistic forecasting in nonlinear times series analysis.

Chaos 2016 Dec;26(12):123114

The Institute of Industrial Science, The University of Tokyo, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.4971412DOI Listing
December 2016

A coherent Ising machine for 2000-node optimization problems.

Science 2016 11 20;354(6312):603-606. Epub 2016 Oct 20.

NTT Basic Research Laboratories, NTT Corporation, 3-1 Morinosato Wakamiya, Atsugi, Kanagawa 243-0198, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.aah4243DOI Listing
November 2016

Graph distance for complex networks.

Sci Rep 2016 10 11;6:34944. Epub 2016 Oct 11.

Institute of Industrial Science, the University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep34944DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5057156PMC
October 2016

Three-dimensional reconstruction of single-cell chromosome structure using recurrence plots.

Sci Rep 2016 10 11;6:34982. Epub 2016 Oct 11.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/srep34982
Publisher Site
http://dx.doi.org/10.1038/srep34982DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5057099PMC
October 2016

Possibility of short-term probabilistic forecasts for large earthquakes making good use of the limitations of existing catalogs.

Phys Rev E 2016 Oct 20;94(4-1):042217. Epub 2016 Oct 20.

Institute of Industrial Science, University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevE.94.042217DOI Listing
October 2016

Oscillation dynamics underlie functional switching of NF-κB for B-cell activation.

NPJ Syst Biol Appl 2016 20;2:16024. Epub 2016 Oct 20.

Laboratory for Integrated Cellular Systems, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/npjsba.2016.24DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5516862PMC
October 2016

Experimental and theoretical bases for mechanisms of antigen discrimination by T cells.

Biophysics (Nagoya-shi) 2015 26;11:85-92. Epub 2015 Mar 26.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2142/biophysics.11.85DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4736787PMC
August 2016

The Suppression of Beta Oscillations in the Primate Supplementary Motor Complex Reflects a Volatile State During the Updating of Action Sequences.

Cereb Cortex 2016 08 1;26(8):3442-3452. Epub 2015 Aug 1.

Department of Physiology, Tohoku University School of Medicine, Sendai 980-8575, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/cercor/bhv163DOI Listing
August 2016

Qualitative-Modeling-Based Silicon Neurons and Their Networks.

Front Neurosci 2016 15;10:273. Epub 2016 Jun 15.

Institute of Industrial Science, University of Tokyo Tokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fnins.2016.00273DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4908299PMC
July 2016

Enhancing synchronization stability in a multi-area power grid.

Sci Rep 2016 05 26;6:26596. Epub 2016 May 26.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep26596DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4881022PMC
May 2016

Decision-making ability of Physarum polycephalum enhanced by its coordinated spatiotemporal oscillatory dynamics.

Bioinspir Biomim 2016 Apr 12;11(3):036001. Epub 2016 Apr 12.

FIRST, Innovative Mathematical Modelling Project, JST, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1088/1748-3190/11/3/036001DOI Listing
April 2016

Echolocating bats use future-target information for optimal foraging.

Proc Natl Acad Sci U S A 2016 Apr 11;113(17):4848-52. Epub 2016 Apr 11.

Faculty of Life and Medical Sciences, Doshisha University, Kyoto 610-0394, Japan; Japan Science and Technology Agency, Precursory Research for Embryonic Science and Technology, Saitama 332-0012, Japan.

View Article

Download full-text PDF

Source
http://www.pnas.org/content/113/17/4848.full.pdf
Web Search
http://www.pnas.org/lookup/doi/10.1073/pnas.1515091113
Publisher Site
http://dx.doi.org/10.1073/pnas.1515091113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4855569PMC
April 2016

Quantifying the effect of Vpu on the promotion of HIV-1 replication in the humanized mouse model.

Retrovirology 2016 Apr 18;13:23. Epub 2016 Apr 18.

Department of Biology, Faculty of Sciences, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka, Fukuoka, 812-8581, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12977-016-0252-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4834825PMC
April 2016

Intermittent Androgen Suppression: Estimating Parameters for Individual Patients Based on Initial PSA Data in Response to Androgen Deprivation Therapy.

PLoS One 2015 24;10(6):e0130372. Epub 2015 Jun 24.

Institute of Industrial Science, The University of Tokyo, Meguro-ku, Tokyo 153-8505, Japan; Graduate School of Information Science and Technology, The University of Tokyo, Tokyo, Japan; Graduate School of Engineering, The University of Tokyo, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0130372PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4481271PMC
March 2016

Population Code Dynamics in Categorical Perception.

Sci Rep 2016 Mar 3;6:22536. Epub 2016 Mar 3.

Graduate School of Information Science and Technology, the University of Tokyo. 7-3-1 Hongo, Bunkyo, Tokyo 113-8656, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep22536DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4776180PMC
March 2016

Coarse-graining time series data: Recurrence plot of recurrence plots and its application for music.

Chaos 2016 Feb;26(2):023116

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.4941371DOI Listing
February 2016

Robustness of oscillatory behavior in correlated networks.

PLoS One 2015 20;10(4):e0123722. Epub 2015 Apr 20.

Institute of Industrial Science, The University of Tokyo, Tokyo 153-8505, Japan; Graduate School of Information Science and Technology, The University of Tokyo, Tokyo 113-8656, Japan; Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0123722PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4403822PMC
January 2016

Identifying early-warning signals of critical transitions with strong noise by dynamical network markers.

Sci Rep 2015 Dec 9;5:17501. Epub 2015 Dec 9.

Collaborative Research Center for Innovative Mathematical Modelling, Institute of Industrial Science, University of Tokyo, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep17501DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4673532PMC
December 2015

Edit distance for marked point processes revisited: An implementation by binary integer programming.

Chaos 2015 Dec;25(12):123117

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.4938186DOI Listing
December 2015

Ability of intermittent androgen suppression to selectively create a non-trivial periodic orbit for a type of prostate cancer patients.

J Theor Biol 2015 Nov 28;384:147-52. Epub 2015 Aug 28.

Institute of Industrial Science, The University of Tokyo, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jtbi.2015.08.010DOI Listing
November 2015

A two-phase Poisson process model and its application to analysis of cancer mortality among A-bomb survivors.

Math Biosci 2015 Oct 11;268:31-37. Epub 2015 Aug 11.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.mbs.2015.07.004DOI Listing
October 2015

Parsimonious description for predicting high-dimensional dynamics.

Sci Rep 2015 Oct 29;5:15736. Epub 2015 Oct 29.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep15736DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4625180PMC
October 2015

Controlled generation of switching dynamics among metastable states in pulse-coupled oscillator networks.

Chaos 2015 Oct;25(10):103109

School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona 85287, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.4930840DOI Listing
October 2015

A hierarchical multi-oscillator network orchestrates the Arabidopsis circadian system.

Cell 2015 Sep;163(1):148-59

Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra, 08193 Barcelona, Spain; Consejo Superior de Investigaciones Científicas (CSIC), 08028 Barcelona, Spain. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cell.2015.08.062DOI Listing
September 2015

Identifying critical differentiation state of MCF-7 cells for breast cancer by dynamical network biomarkers.

Front Genet 2015 28;6:252. Epub 2015 Jul 28.

Collaborative Research Center for Innovative Mathematical Modelling, University of Tokyo Tokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fgene.2015.00252DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4516973PMC
August 2015

Pandemic HIV-1 Vpu overcomes intrinsic herd immunity mediated by tetherin.

Sci Rep 2015 Jul 17;5:12256. Epub 2015 Jul 17.

Laboratory of Viral Pathogenesis, Institute for Virus Research, Kyoto University, Kyoto, Kyoto 6068507, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep12256DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4505337PMC
July 2015

Understanding migraine using dynamic network biomarkers.

Cephalalgia 2015 Jun 16;35(7):627-30. Epub 2014 Sep 16.

Center for Experimental Medicine, Department of Systems Neuroscience, Universitätsklinikum Hamburg-Eppendorf, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1177/0333102414550108DOI Listing
June 2015

Quantifying the Antiviral Effect of IFN on HIV-1 Replication in Cell Culture.

Sci Rep 2015 Jun 29;5:11761. Epub 2015 Jun 29.

1] INSERM, U941, Paris, France [2] Univ Paris Diderot, Sorbonne Paris Cité, IUH, Paris, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep11761DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4483772PMC
June 2015

Learning-stage-dependent plasticity of temporal coherence in the auditory cortex of rats.

Brain Topogr 2015 May 11;28(3):401-10. Epub 2014 Mar 11.

Research Center for Advanced Science and Technology, The University of Tokyo, Komaba 4-6-1, Meguro-ku, Tokyo, 153-8904, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s10548-014-0359-5DOI Listing
May 2015

Predicting disease progression from short biomarker series using expert advice algorithm.

Sci Rep 2015 May 20;5:8953. Epub 2015 May 20.

1] Graduate School of Information Science and Technology, The University of Tokyo, Tokyo 113-8656, Japan [2] Institute of Industrial Science, The University of Tokyo, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep08953DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5386184PMC
May 2015

A method to determine the duration of the eclipse phase for in vitro infection with a highly pathogenic SHIV strain.

Sci Rep 2015 May 21;5:10371. Epub 2015 May 21.

1] Department of Biology, Kyushu University, Fukuoka 812-8581, Japan [2] PRESTO, JST, Kawaguchi, Saitama 3320012, Japan [3] CREST, JST, Kawaguchi, Saitama 3320012, Japan.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/srep10371
Publisher Site
http://dx.doi.org/10.1038/srep10371DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4440524PMC
May 2015

Pathwise thermodynamic structure in population dynamics.

Phys Rev E Stat Nonlin Soft Matter Phys 2015 Mar 12;91(3):032120. Epub 2015 Mar 12.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevE.91.032120DOI Listing
March 2015

Arm-use dependent lateralization of gamma and beta oscillations in primate medial motor areas.

Neural Netw 2015 Feb 17;62:62-6. Epub 2014 Jun 17.

Department of Physiology, Tohoku University School of Medicine, Sendai 980-8575, Japan; Core Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency, Kawaguchi 332-1102, Japan. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.neunet.2014.06.004DOI Listing
February 2015

Computational model of visual hallucination in dementia with Lewy bodies.

Neural Netw 2015 Feb 16;62:73-82. Epub 2014 Sep 16.

Research Institute for Electronic Science, Hokkaido University, Sapporo 060-0812, Japan; Research Center for Integrative Mathematics (RCIM), Hokkaido University, Sapporo 060-0812, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.neunet.2014.09.001DOI Listing
February 2015

Comparison between mathematical models of intermittent androgen suppression for prostate cancer.

J Theor Biol 2015 Feb 15;366:33-45. Epub 2014 Nov 15.

Graduate School of Information Science and Technology, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan; Institute of Industrial Science, University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jtbi.2014.10.034DOI Listing
February 2015

Unambiguous reconstruction of network structure using avalanche dynamics.

Phys Rev E Stat Nonlin Soft Matter Phys 2015 Feb 5;91(2):022804. Epub 2015 Feb 5.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevE.91.022804DOI Listing
February 2015

Approximating high-dimensional dynamics by barycentric coordinates with linear programming.

Chaos 2015 Jan;25(1):013114

Center for Research in Agricultural Genomics (CRAG), Consorci CSIC-IRTA-UAB-UB, Barcelona 08193, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.4906746DOI Listing
January 2015

Steady state and mean recurrence time for random walks on stochastic temporal networks.

Phys Rev E Stat Nonlin Soft Matter Phys 2015 Jan 8;91(1):012806. Epub 2015 Jan 8.

Department of Engineering Mathematics, University of Bristol, Bristol, UK and CREST, JST, Saitama, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevE.91.012806DOI Listing
January 2015

Detecting causality from nonlinear dynamics with short-term time series.

Sci Rep 2014 Dec 12;4:7464. Epub 2014 Dec 12.

1] Collaborative Research Center for Innovative Mathematical Modelling, Institute of Industrial Science, The University of Tokyo, Japan [2] Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep07464DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5376982PMC
December 2014

Changes of firing rate induced by changes of phase response curve in bifurcation transitions.

Neural Comput 2014 Nov 22;26(11):2395-418. Epub 2014 Aug 22.

Department of Brain Science and Engineering, Graduate School of Life Science and Systems Engineering, Kyushu Institute of Technology, Wakamatsu, Kitakyushu, 808-0196, Japan; Frankfurt Institute for Advanced Studies, Johann Wolfgang Goethe University, 60438, Frankfurt am Main, Germany; and Institute of Industrial Science, University of Tokyo, Meguro, Tokyo, 153-8505, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1162/NECO_a_00653DOI Listing
November 2014

A partial differential equation model and its reduction to an ordinary differential equation model for prostate tumor growth under intermittent hormone therapy.

J Math Biol 2014 Oct 28;69(4):817-38. Epub 2013 Aug 28.

Department of Applied Mathematics, Dong Hua University, Shanghai , 200051, People's Republic of China,

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00285-013-0718-yDOI Listing
October 2014

HIV-1 Vpr accelerates viral replication during acute infection by exploitation of proliferating CD4+ T cells in vivo.

PLoS Pathog 2013 5;9(12):e1003812. Epub 2013 Dec 5.

Laboratory of Virus Pathogenesis, Institute for Virus Research, Kyoto University, Kyoto, Kyoto, Japan ; Center for Emerging Virus Research, Institute for Virus Research, Kyoto University, Kyoto, Kyoto, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.ppat.1003812DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3855622PMC
September 2014

Increased firing irregularity as an emergent property of neural-state transition in monkey prefrontal cortex.

PLoS One 2013 4;8(12):e80906. Epub 2013 Dec 4.

Department of Physiology, Tohoku University School of Medicine, Sendai, Japan ; The Core Research for Evolutional Science and Technology Program, Japan Science and Technology Agency, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0080906PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3857743PMC
September 2014

Epidemic spread on interconnected metapopulation networks.

Phys Rev E Stat Nonlin Soft Matter Phys 2014 Sep 16;90(3):032806. Epub 2014 Sep 16.

Institute of Industrial Science, University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevE.90.032806DOI Listing
September 2014

Reinitiation enhances reliable transcriptional responses in eukaryotes.

J R Soc Interface 2014 Aug;11(97):20140326

FIRST, Aihara Innovative Mathematical Modelling Project, Japan Science and Technology Agency, Tokyo, Japan Institute of Industrial Science, The University of Tokyo, Tokyo, Japan Key Laboratory of Systems Biology, Chinese Academy of Sciences, Shanghai, People's Republic of China

View Article

Download full-text PDF

Source
http://rsif.royalsocietypublishing.org/cgi/doi/10.1098/rsif.
Publisher Site
http://dx.doi.org/10.1098/rsif.2014.0326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4208363PMC
August 2014

Random and targeted interventions for epidemic control in metapopulation models.

Sci Rep 2014 Jul 16;4:5522. Epub 2014 Jul 16.

1] Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan [2] Institute of Industrial Science, The University of Tokyo, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep05522DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4099978PMC
July 2014

Identifying critical transitions of complex diseases based on a single sample.

Bioinformatics 2014 Jun 10;30(11):1579-86. Epub 2014 Feb 10.

School of Mathematics, South China University of Technology, Guangzhou 510640, China, Key Laboratory of Systems Biology, SIBS-Novo Nordisk Translational Research Centre for PreDiabetes, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China, School of Mathematics, Shandong University, Jinan 250100, China, Collaborative Research Center for Innovative Mathematical Modelling, Institute of Industrial Science, University of Tokyo, Tokyo 153-8505, Japan and Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USASchool of Mathematics, South China University of Technology, Guangzhou 510640, China, Key Laboratory of Systems Biology, SIBS-Novo Nordisk Translational Research Centre for PreDiabetes, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China, School of Mathematics, Shandong University, Jinan 250100, China, Collaborative Research Center for Innovative Mathematical Modelling, Institute of Industrial Science, University of Tokyo, Tokyo 153-8505, Japan and Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btu084DOI Listing
June 2014

A new protocol for intermittent androgen suppression therapy of prostate cancer with unstable saddle-point dynamics.

J Theor Biol 2014 Jun 10;350:1-16. Epub 2014 Feb 10.

Institute of Industrial Science, The University of Tokyo, Komaba, Meguro-ku, Tokyo, Japan.

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S00225193140006
Publisher Site
http://dx.doi.org/10.1016/j.jtbi.2014.02.004DOI Listing
June 2014

Model predictive control for optimally scheduling intermittent androgen suppression of prostate cancer.

Methods 2014 Jun 27;67(3):278-81. Epub 2014 Mar 27.

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ymeth.2014.03.018DOI Listing
June 2014

Dynamical robustness of coupled heterogeneous oscillators.

Phys Rev E Stat Nonlin Soft Matter Phys 2014 May 12;89(5):052906. Epub 2014 May 12.

Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan and Graduate School of Information Science and Technology, The University of Tokyo, Tokyo 113-8656, Japan and Institute of Industrial Science, The University of Tokyo, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevE.89.052906DOI Listing
May 2014

The cardioprotective effects of novel Na+/H+ exchanger inhibitor TY-51924 on ischemia/reperfusion injury.

J Cardiovasc Pharmacol 2014 Apr;63(4):351-9

*Department of R&D, Fukushima Research Laboratories, TOA EIYO LTD, Fukushima, Japan; and †Department of R&D, Tokyo Research Laboratories, TOA EIYO LTD, Saitama, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1097/FJC.0000000000000055DOI Listing
April 2014

Probabilistic differential diagnosis of Middle East respiratory syndrome (MERS) using the time from immigration to illness onset among imported cases.

J Theor Biol 2014 Apr 6;346:47-53. Epub 2014 Jan 6.

Graduate School of Medicine, The University of Tokyo, Medical Building No. 3, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; PRESTO, Japan Science and Technology Agency, Saitama, Japan. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jtbi.2013.12.024DOI Listing
April 2014

Relationship between brain network pattern and cognitive performance of children revealed by MEG signals during free viewing of video.

Brain Cogn 2014 Apr 11;86:10-6. Epub 2014 Feb 11.

Department of Electrical Engineering and Information Systems, Graduate School of Engineering, The University of Tokyo, Tokyo 153-8904, Japan; Institute of Industrial Science, The University of Tokyo, Tokyo 153-8904, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bandc.2014.01.011DOI Listing
April 2014

Evaluating roles of nodes in optimal allocation of vaccines with economic considerations.

PLoS One 2013 14;8(8):e70793. Epub 2013 Aug 14.

FIRST, Aihara Innovative Mathematical Modelling Project, Japan Science and Technology Agency, Meguro-ku, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0070793PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3743830PMC
March 2014

Three-dimensional tori and Arnold tongues.

Chaos 2014 Mar;24(1):013137

Institute of Industrial Science, the University of Tokyo, Meguro-ku 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.4869303DOI Listing
March 2014

Forecasting large aftershocks within one day after the main shock.

Sci Rep 2013 ;3:2218

FIRST, Aihara Innovative Mathematical Modelling Project, Japan Science and Technology Agency, Kawaguchi, Saitama 332-0012, Japan.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/srep02218
Publisher Site
http://dx.doi.org/10.1038/srep02218DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715793PMC
February 2014

Spontaneous slow oscillations and sequential patterns due to short-term plasticity in a model of the cortex.

Neural Comput 2013 Dec 3;25(12):3131-82. Epub 2013 Sep 3.

Graduate School of Engineering, University of Tokyo, Bunkyo-ku, Tokyo 113-8505, Japan

View Article

Download full-text PDF

Source
http://www.mitpressjournals.org/doi/10.1162/NECO_a_00513
Publisher Site
http://dx.doi.org/10.1162/NECO_a_00513DOI Listing
December 2013

Application of joint permutations for predicting coupled time series.

Chaos 2013 Dec;23(4):043104

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.4824313DOI Listing
December 2013

Parameter estimation and optimal scheduling algorithm for a mathematical model of intermittent androgen suppression therapy for prostate cancer.

Chaos 2013 Dec;23(4):043125

Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.4833455DOI Listing
December 2013

Pseudo-orthogonalization of memory patterns for associative memory.

IEEE Trans Neural Netw Learn Syst 2013 Nov;24(11):1877-87

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1109/TNNLS.2013.2268542DOI Listing
November 2013

Efficient recovery of dynamic behavior in coupled oscillator networks.

Phys Rev E Stat Nonlin Soft Matter Phys 2013 Sep 13;88(3):032909. Epub 2013 Sep 13.

Graduate School of Information Science and Technology, The University of Tokyo, Tokyo 113-8656, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevE.88.032909DOI Listing
September 2013

Towards dynamical network biomarkers in neuromodulation of episodic migraine.

Transl Neurosci 2013 Sep;4(3)

Department of Physics, AG NLD Cardiovascular Physics, Humboldt-Universität zu Berlin, Robert- Koch-Platz 4, 10115 Berlin, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2478/s13380-013-0127-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3840387PMC
September 2013

Nonstandard scaling law of fluctuations in finite-size systems of globally coupled oscillators.

Phys Rev E Stat Nonlin Soft Matter Phys 2013 Aug 30;88(2):024102. Epub 2013 Aug 30.

Institute of Industrial Science, The University of Tokyo, Tokyo 153-8505, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevE.88.024102DOI Listing
August 2013

Combined effects of LTP/LTD and synaptic scaling in formation of discrete and line attractors with persistent activity from non-trivial baseline.

Cogn Neurodyn 2012 Dec 14;6(6):499-524. Epub 2012 Jul 14.

Graduate School of Engineering, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo, 113-8656 Japan.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/s11571-012-9211-3
Publisher Site
http://dx.doi.org/10.1007/s11571-012-9211-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3495077PMC
December 2012