Katsuya Tsuchihara

Katsuya Tsuchihara

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Katsuya Tsuchihara

Publications by authors named "Katsuya Tsuchihara"

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Multifocal origin of occupational cholangiocarcinoma revealed by comparison of multilesion mutational profiles.

Carcinogenesis 2019 Jun 20. Epub 2019 Jun 20.

Division of Translational Informatics, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center, Kashiwanoha, Kashiwa, Chiba, Japan.

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http://dx.doi.org/10.1093/carcin/bgz120DOI Listing
June 2019

Extraction of Aqueous Metabolites from Cultured Adherent Cells for Metabolomic Analysis by Capillary Electrophoresis-Mass Spectrometry.

J Vis Exp 2019 Jun 9(148). Epub 2019 Jun 9.

Shonai Regional Industry Promotion Center; Tsuruoka Metabolomics Laboratory, National Cancer Center; Division of Translational Informatics, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center;

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http://dx.doi.org/10.3791/59551DOI Listing
June 2019

Effect of 5-fluorouracil on cellular response to proton beam in esophageal cancer cell lines according to the position of spread-out Bragg peak.

Acta Oncol 2019 Apr 11;58(4):475-482. Epub 2019 Jan 11.

a Division of Radiation Oncology and Particle Therapy , National Cancer Center Hospital East, Kashiwa , Chiba , Japan.

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https://www.tandfonline.com/doi/full/10.1080/0284186X.2018.1
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http://dx.doi.org/10.1080/0284186X.2018.1555373DOI Listing
April 2019

Comparative sequence analysis of patient-matched primary colorectal cancer, metastatic, and recurrent metastatic tumors after adjuvant FOLFOX chemotherapy.

BMC Cancer 2019 Mar 21;19(1):255. Epub 2019 Mar 21.

Division of Translational Informatics, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center, 6-5-1 Kashiwanoha, Kashiwa, Chiba, 277-8577, Japan.

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http://dx.doi.org/10.1186/s12885-019-5479-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6429751PMC
March 2019

Evaluation and application of RNA-Seq by MinION.

DNA Res 2019 Feb;26(1):55-65

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.

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http://dx.doi.org/10.1093/dnares/dsy038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6379022PMC
February 2019

Collagen type I induces EGFR-TKI resistance in EGFR-mutated cancer cells by mTOR activation through Akt-independent pathway.

Cancer Sci 2018 Jun;109(6):2063-2073

Laboratory of Cancer Biology, Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.

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http://dx.doi.org/10.1111/cas.13624DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5989854PMC
June 2018

Metabolic Determinants of Sensitivity to Phosphatidylinositol 3-Kinase Pathway Inhibitor in Small-Cell Lung Carcinoma.

Cancer Res 2018 05 28;78(9):2179-2190. Epub 2018 Feb 28.

Division of Translational Genomics, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center, Kashiwa, Chiba, Japan.

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http://dx.doi.org/10.1158/0008-5472.CAN-17-2109DOI Listing
May 2018

Podoplanin-positive cancer-associated fibroblast recruitment within cancer stroma is associated with a higher number of single nucleotide variants in cancer cells in lung adenocarcinoma.

J Cancer Res Clin Oncol 2018 May 6;144(5):893-900. Epub 2018 Mar 6.

Division of Pathology, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center, 6-5-1 Kashiwanoha, Kashiwa, Chiba, 277-8577, Japan.

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http://dx.doi.org/10.1007/s00432-018-2619-3DOI Listing
May 2018

Identification of potential regulatory mutations using multi-omics analysis and haplotyping of lung adenocarcinoma cell lines.

Sci Rep 2018 03 21;8(1):4926. Epub 2018 Mar 21.

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, the University of Tokyo, Chiba, Japan.

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http://dx.doi.org/10.1038/s41598-018-23342-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5862974PMC
March 2018

Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response.

Sci Rep 2018 02 22;8(1):3482. Epub 2018 Feb 22.

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, 277-8562, Japan.

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http://dx.doi.org/10.1038/s41598-018-21161-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5823859PMC
February 2018

DBTSS/DBKERO for integrated analysis of transcriptional regulation.

Nucleic Acids Res 2018 01;46(D1):D229-D238

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, the University of Tokyo, Chiba, Japan.

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http://dx.doi.org/10.1093/nar/gkx1001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753362PMC
January 2018

Sequencing and phasing cancer mutations in lung cancers using a long-read portable sequencer.

DNA Res 2017 Dec;24(6):585-596

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.

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http://dx.doi.org/10.1093/dnares/dsx027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5726485PMC
December 2017

Immunohistochemical and genetic characteristics of lung cancer mimicking organizing pneumonia.

Lung Cancer 2017 11 5;113:134-139. Epub 2017 Oct 5.

Division of Pathology, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center Hospital East, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.lungcan.2017.10.001DOI Listing
November 2017

[Current Status and Future Perspectives of SCRUM-Japan].

Gan To Kagaku Ryoho 2017 Aug;44(8):621-626

National Cancer Center Hospital East.

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August 2017

Genomic and transcriptomic analysis of imatinib resistance in gastrointestinal stromal tumors.

Genes Chromosomes Cancer 2017 04 23;56(4):303-313. Epub 2017 Jan 23.

Department of Bioinformatics, National Cancer Center Research Institute, 5-1-1 Tsukiji, Chuo-ku, Tokyo, 104-0045, Japan.

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http://dx.doi.org/10.1002/gcc.22438DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5324566PMC
April 2017

Development of Highly Selective Fluorescent Probe Enabling Flow-Cytometric Isolation of ALDH3A1-Positive Viable Cells.

Bioconjug Chem 2017 02 15;28(2):302-306. Epub 2016 Dec 15.

CREST, Japan Science and Technology Agency , 7 Gobancho, Chiyoda-ku, Tokyo 102-0076, Japan.

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http://dx.doi.org/10.1021/acs.bioconjchem.6b00618DOI Listing
February 2017

Signaling through the Phosphatidylinositol 3-Kinase (PI3K)/Mammalian Target of Rapamycin (mTOR) Axis Is Responsible for Aerobic Glycolysis mediated by Glucose Transporter in Epidermal Growth Factor Receptor (EGFR)-mutated Lung Adenocarcinoma.

J Biol Chem 2015 Jul 28;290(28):17495-504. Epub 2015 May 28.

From the Division of Translational Research, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center, Kashiwa, Chiba 277-8577, Japan, the Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8561.

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http://dx.doi.org/10.1074/jbc.M115.660498DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4498084PMC
July 2015

Genomic profiling of small-cell lung cancer: the era of targeted therapies.

Jpn J Clin Oncol 2015 Jun 10;45(6):513-9. Epub 2015 Feb 10.

Division of Thoracic Oncology, National Cancer Center Hospital East, Kashiwa.

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https://academic.oup.com/jjco/article-lookup/doi/10.1093/jjc
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http://dx.doi.org/10.1093/jjco/hyv017DOI Listing
June 2015

Expression and clinical significance of genes frequently mutated in small cell lung cancers defined by whole exome/RNA sequencing.

Carcinogenesis 2015 Jun 11;36(6):616-21. Epub 2015 Apr 11.

Division of Genome Biology, National Cancer Center Research Institute, Tokyo 104-0045, Japan, Cancer Genome Biology Group, Institute of Predictive and Personalized Medicine of Cancer, 08916 Barcelona, Spain

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http://dx.doi.org/10.1093/carcin/bgv026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4462675PMC
June 2015

Beyond ALK-RET, ROS1 and other oncogene fusions in lung cancer.

Transl Lung Cancer Res 2015 Apr;4(2):156-64

1 Division of Genome Biology, National Cancer Center Research Institute, Tokyo, Japan ; 2 Division of Translational Research, Exploratory Oncology Research & Clinical Trial Center (EPOC), National Cancer Center, Tokyo and Chiba, Japan ; 3 Division of Thoracic Oncology, National Cancer Center Hospital East, Chiba, Japan ; 4 Division of Pathology and Clinical Laboratories, National Cancer Center Hospital, Tokyo, Japan.

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http://dx.doi.org/10.3978/j.issn.2218-6751.2014.11.11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4384213PMC
April 2015

Single-cell analysis of lung adenocarcinoma cell lines reveals diverse expression patterns of individual cells invoked by a molecular target drug treatment.

Genome Biol 2015 Apr 3;16:66. Epub 2015 Apr 3.

Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, 277-8562, Japan.

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http://dx.doi.org/10.1186/s13059-015-0636-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4450998PMC
April 2015

DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data.

Nucleic Acids Res 2015 Jan 5;43(Database issue):D87-91. Epub 2014 Nov 5.

Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan

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http://dx.doi.org/10.1093/nar/gku1080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383915PMC
January 2015

Aberrant transcriptional regulations in cancers: genome, transcriptome and epigenome analysis of lung adenocarcinoma cell lines.

Nucleic Acids Res 2014 Dec 6;42(22):13557-72. Epub 2014 Nov 6.

Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan

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http://academic.oup.com/nar/article/42/22/13557/2411848/Aber
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http://dx.doi.org/10.1093/nar/gku885DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4267666PMC
December 2014

Mechanisms of regulation of PFKFB expression in pancreatic and gastric cancer cells.

World J Gastroenterol 2014 Oct;20(38):13705-17

Oleksandr H Minchenko, Dmytro O Minchenko, Department of Molecular Biology, Palladin Institute of Biochemistry, Kiev 01601, Ukraine.

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http://dx.doi.org/10.3748/wjg.v20.i38.13705DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4194554PMC
October 2014

Therapeutic priority of the PI3K/AKT/mTOR pathway in small cell lung cancers as revealed by a comprehensive genomic analysis.

J Thorac Oncol 2014 Sep;9(9):1324-31

*Division of Thoracic Oncology, National Cancer Center Hospital East; †Exploratory Oncology Research and Clinical Trial Center, National Cancer Center; ‡Pathology Division, Research Center for Innovative Oncology, National Cancer Center Hospital East; §Division of Thoracic Surgery, National Cancer Center Hospital East, Kashiwa, Japan; and ‖Division of Genome Biology, National Cancer Center Research Institute, Chuo-ku, Tokyo, Japan.

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http://dx.doi.org/10.1097/JTO.0000000000000250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4154841PMC
September 2014

Effect of a poly(ADP-ribose) polymerase-1 inhibitor against esophageal squamous cell carcinoma cell lines.

Cancer Sci 2014 Feb 5;105(2):202-10. Epub 2013 Dec 5.

Division of Translational Research, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center, Kashiwa, Chiba, Japan; Department of Otorhinolaryngology, University of Kitasato Hospital, Minami-ku, Sagamihara, Kanagawa, Japan.

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http://dx.doi.org/10.1111/cas.12322DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4317825PMC
February 2014

[Clinical application of next-generation sequencing technologies to achieve cancer precision medicine].

Gan To Kagaku Ryoho 2014 Jan;41(1):1-6

Division of Translational Research and Clinical Trial Center, National Cancer Center.

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January 2014

Distinct clinicopathologic characteristics of lung mucinous adenocarcinoma with KRAS mutation.

Hum Pathol 2013 Dec 10;44(12):2636-42. Epub 2013 Oct 10.

Pathology Division, Research Center for Innovative Oncology, National Cancer Center Hospital East, Kashiwa, 277-8577 Chiba, Japan; Division of Thoracic Oncology, National Cancer Center Hospital East, Kashiwa, 277-8577 Chiba, Japan; Cancer Physiology Project, Research Center for Innovative Oncology, National Cancer Center Hospital East, Kashiwa, 277-8577 Chiba, Japan.

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https://linkinghub.elsevier.com/retrieve/pii/S00468177130030
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http://dx.doi.org/10.1016/j.humpath.2013.05.026DOI Listing
December 2013

RET-targeting molecular stratified non-small-cell lung cancers.

Transl Lung Cancer Res 2013 Dec;2(6):463-5

Division of Translational Research, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center, 6-5-1 Kashiwanoha, Kashiwa, Chiba 277-8577, Japan.

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http://dx.doi.org/10.3978/j.issn.2218-6751.2013.11.02DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4367625PMC
December 2013

RET fusion gene: translation to personalized lung cancer therapy.

Cancer Sci 2013 Nov 1;104(11):1396-400. Epub 2013 Oct 1.

Division of Translational Research, Exploratory Oncology Research & Clinical Trial Center (EPOC), National Cancer Center, Tokyo, Japan; Division of Genome Biology, National Cancer Center Research Institute, Tokyo, Japan.

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http://dx.doi.org/10.1111/cas.12275DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5439108PMC
November 2013

Critical role of H2O2 generated by NOX4 during cellular response under glucose deprivation.

PLoS One 2013 21;8(3):e56628. Epub 2013 Mar 21.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0056628PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3605446PMC
September 2013

Identification of a lung adenocarcinoma cell line with CCDC6-RET fusion gene and the effect of RET inhibitors in vitro and in vivo.

Cancer Sci 2013 Jul 12;104(7):896-903. Epub 2013 May 12.

Division of Translational Research, Research Center for Innovative Oncology, National Cancer Center Hospital East, Kashiwa, Chiba, Japan.

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http://dx.doi.org/10.1111/cas.12175DOI Listing
July 2013

Clinicopathological characteristics of EGFR mutated adenosquamous carcinoma of the lung.

Pathol Int 2013 Feb 21;63(2):77-84. Epub 2013 Feb 21.

Pathology Division, Research Center for Innovative Oncology, National Cancer Center Hospital East, Kashiwa, Chiba, Japan.

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http://dx.doi.org/10.1111/pin.12033DOI Listing
February 2013

Clinical outcome of Japanese metastatic colorectal cancer patients harbouring the KRAS p.G13D mutation treated with cetuximab + irinotecan.

Jpn J Clin Oncol 2012 Dec 15;42(12):1146-51. Epub 2012 Oct 15.

Department of Gastroenterology and Gastrointestinal Oncology, National Cancer Center Hospital East, 6-5-1 Kashiwanoha, Kashiwa, Chiba 277-8577, Japan.

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http://dx.doi.org/10.1093/jjco/hys160DOI Listing
December 2012

Hypoglycemic/hypoxic condition in vitro mimicking the tumor microenvironment markedly reduced the efficacy of anticancer drugs.

Cancer Sci 2011 May 7;102(5):975-82. Epub 2011 Mar 7.

Cancer Physiology Project, Research Center for Innovative Oncology, National Cancer Center Hospital East, Kashiwa, Chiba, Japan.

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http://dx.doi.org/10.1111/j.1349-7006.2011.01880.xDOI Listing
May 2011

Biased discordance of KRAS mutation detection in archived colorectal cancer specimens between the ARMS-Scorpion method and direct sequencing.

Jpn J Clin Oncol 2011 Feb 26;41(2):239-44. Epub 2010 Nov 26.

Cancer Physiology Project, National Cancer Center Hospital East, Kashiwa, Chiba 277-8577, Japan.

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http://dx.doi.org/10.1093/jjco/hyq216DOI Listing
February 2011

Feasibility and robustness of amplification refractory mutation system (ARMS)-based KRAS testing using clinically available formalin-fixed, paraffin-embedded samples of colorectal cancers.

Jpn J Clin Oncol 2011 Jan 9;41(1):52-6. Epub 2010 Aug 9.

Cancer Physiology Project, Research Center for Innovative Oncology, National Cancer Center Hospital East, Kashiwa, Japan.

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http://dx.doi.org/10.1093/jjco/hyq151DOI Listing
January 2011

[Transcriptome analyses using massively paralleled sequencers].

Tanpakushitsu Kakusan Koso 2009 Aug;54(10):1256-63

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August 2009

Autophagy and cancer: dynamism of the metabolism of tumor cells and tissues.

Cancer Lett 2009 Jun 11;278(2):130-138. Epub 2008 Nov 11.

Cancer Physiology Project, Research Center for Innovative oncology, National Cancer Center Hospital East, 6-5-1 Kashiwanoha, Kashiwa, Chiba 277-8577, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.canlet.2008.09.040DOI Listing
June 2009

Provision of a voluntary exercise environment enhances running activity and prevents obesity in Snark-deficient mice.

Am J Physiol Endocrinol Metab 2009 May 10;296(5):E1013-21. Epub 2009 Mar 10.

Graduate School of Health and Sports Science, Juntendo University, Inba, Chiba 270-1695, Japan.

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http://dx.doi.org/10.1152/ajpendo.90891.2008DOI Listing
May 2009

Massive transcriptional start site analysis of human genes in hypoxia cells.

Nucleic Acids Res 2009 Apr 22;37(7):2249-63. Epub 2009 Feb 22.

Cancer Physiology Project, Research Center for Innovative Oncology, National Cancer Center Hospital East, Kashiwa, Chiba, Japan.

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http://dx.doi.org/10.1093/nar/gkp066DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2673422PMC
April 2009

TAp73 regulates the spindle assembly checkpoint by modulating BubR1 activity.

Proc Natl Acad Sci U S A 2009 01 12;106(3):797-802. Epub 2009 Jan 12.

The Campbell Family Institute for Breast Cancer Research, Princess Margaret Hospital, Toronto, Ontario, Canada M5G 2C1.

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http://dx.doi.org/10.1073/pnas.0812096106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2621249PMC
January 2009

Nuclear localization of SNARK; its impact on gene expression.

Biochem Biophys Res Commun 2008 Dec 6;377(4):1062-6. Epub 2008 Nov 6.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8561, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2008.10.143DOI Listing
December 2008

Susceptibility of Snark-deficient mice to azoxymethane-induced colorectal tumorigenesis and the formation of aberrant crypt foci.

Cancer Sci 2008 Apr 27;99(4):677-82. Epub 2007 Feb 27.

Cancer Physiology Project, Research Center for Innovative Oncology, National Cancer Center Hospital East, 6-5-1 Kashiwanoha, Kashiwa, Chiba 277-8577, Japan.

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http://doi.wiley.com/10.1111/j.1349-7006.2008.00734.x
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http://dx.doi.org/10.1111/j.1349-7006.2008.00734.xDOI Listing
April 2008

Autophagy is activated in colorectal cancer cells and contributes to the tolerance to nutrient deprivation.

Cancer Res 2007 Oct;67(20):9677-84

Cancer Physiology Project and Pathology Division, Research Center for Innovative Oncology, National Cancer Center Hospital East, Chiba, and Department of Surgery, Kyorin University School of Medicine, Tokyo, Japan.

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http://dx.doi.org/10.1158/0008-5472.CAN-07-1462DOI Listing
October 2007

FOXO3a-dependent regulation of Puma in response to cytokine/growth factor withdrawal.

J Exp Med 2006 Jul 26;203(7):1657-63. Epub 2006 Jun 26.

The Campbell family Institute for Breast Cancer Research, University Health Network, Toronto, Ontario M5G 2C1, Canada.

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http://dx.doi.org/10.1084/jem.20060353DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2118330PMC
July 2006

Hepatitis C virus and its roles in cell proliferation.

J Gastroenterol 2002 ;37 Suppl 13:50-4

Department of Viral Oncology, Institute for Virus Research, Kyoto University, Japan.

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http://dx.doi.org/10.1007/bf02990100DOI Listing
January 2003