Publications by authors named "Katleen de Preter"

110Publications

Recurrent chromosomal imbalances provide selective advantage to human embryonic stem cells under enhanced replicative stress conditions.

Authors:
Liselot M Mus Stéphane Van Haver Mina Popovic Wim Trypsteen Steve Lefever Nadja Zeltner Yudelca Ogando Eva Z Jacobs Geertrui Denecker Ellen Sanders Christophe Van Neste Suzanne Vanhauwaert Bieke Decaesteker Dieter Deforce Filip Van Nieuwerburgh Pieter Mestdagh Jo Vandesompele Björn Menten Katleen De Preter Lorenz Studer Björn Heindryckx Kaat Durinck Stephen Roberts Frank Speleman

Genes Chromosomes Cancer 2020 Dec 18. Epub 2020 Dec 18.

Department of Biomolecular Medicine, Ghent University, Ghent, Belgium.

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December 2020

Author Correction: Benchmarking of cell type deconvolution pipelines for transcriptomics data.

Authors:
Francisco Avila Cobos José Alquicira-Hernandez Joseph E Powell Pieter Mestdagh Katleen De Preter

Nat Commun 2020 Dec 2;11(1):6291. Epub 2020 Dec 2.

Center for Medical Genetics Ghent, Department of Biomolecular Medicine, Ghent University, Ghent, Belgium.

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December 2020

Benchmarking of cell type deconvolution pipelines for transcriptomics data.

Authors:
Francisco Avila Cobos José Alquicira-Hernandez Joseph E Powell Pieter Mestdagh Katleen De Preter

Nat Commun 2020 11 6;11(1):5650. Epub 2020 Nov 6.

Center for Medical Genetics Ghent, Department of Biomolecular Medicine, Ghent University, Ghent, Belgium.

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November 2020

Genome-wide study of the effect of blood collection tubes on the cell-free DNA methylome.

Authors:
Ruben Van Paemel Andries De Koker Christa Caggiano Annelien Morlion Pieter Mestdagh Bram De Wilde Jo Vandesompele Katleen De Preter

Epigenetics 2020 Oct 19:1-11. Epub 2020 Oct 19.

Cancer Research Institute Ghent (CRIG) , Ghent, Belgium.

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October 2020

When DNA gets in the way: A cautionary note for DNA contamination in extracellular RNA-seq studies.

Authors:
Jasper Verwilt Wim Trypsteen Ruben Van Paemel Katleen De Preter Maria D Giraldez Pieter Mestdagh Jo Vandesompele

Proc Natl Acad Sci U S A 2020 08;117(32):18934-18936

Department of Biomolecular Medicine, Ghent University, 9000 Ghent, Belgium.

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August 2020

Minimally invasive classification of paediatric solid tumours using reduced representation bisulphite sequencing of cell-free DNA: a proof-of-principle study.

Authors:
Ruben Van Paemel Andries De Koker Charlotte Vandeputte Lieke van Zogchel Tim Lammens Geneviève Laureys Jo Vandesompele Gudrun Schleiermacher Mathieu Chicard Nadine Van Roy Ales Vicha G A M Tytgat Nico Callewaert Katleen De Preter Bram De Wilde

Epigenetics 2020 Jul 14:1-13. Epub 2020 Jul 14.

Department of Biomolecular Medicine, Ghent University , Ghent, Belgium.

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July 2020

Correction to: The pitfalls and promise of liquid biopsies for diagnosing and treating solid tumors in children: as review.

Authors:
Ruben Van Paemel Roos Vlug Katleen De Preter Nadine Van Roy Frank Speleman Leen Willems Tim Lammens Geneviève Laureys Gudrun Schleiermacher Godelieve A M Tytgat Kathy Astrahantseff Hedwig Deubzer Bram De Wilde

Eur J Pediatr 2020 09;179(9):1497-1498

Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium.

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September 2020

Distinct Notch1 and BCL11B requirements mediate human γδ/αβ T cell development.

Authors:
Anne-Catherine Dolens Kaat Durinck Marieke Lavaert Joni Van der Meulen Imke Velghe Jelle De Medts Karin Weening Juliette Roels Katrien De Mulder Pieter-Jan Volders Katleen De Preter Tessa Kerre Bart Vandekerckhove Georges Leclercq Jo Vandesompele Pieter Mestdagh Pieter Van Vlierberghe Frank Speleman Tom Taghon

EMBO Rep 2020 05 7;21(5):e49006. Epub 2020 Apr 7.

Department of Diagnostic Sciences, Ghent University, Ghent, Belgium.

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May 2020

The ETS transcription factor ETV5 is a target of activated ALK in neuroblastoma contributing to increased tumour aggressiveness.

Authors:
Liselot M Mus Irina Lambertz Shana Claeys Candy Kumps Wouter Van Loocke Christophe Van Neste Ganesh Umapathy Marica Vaapil Christoph Bartenhagen Genevieve Laureys Olivier De Wever Daniel Bexell Matthias Fischer Bengt Hallberg Johannes Schulte Bram De Wilde Kaat Durinck Geertrui Denecker Katleen De Preter Frank Speleman

Sci Rep 2020 01 14;10(1):218. Epub 2020 Jan 14.

Department of Biomolecular Medicine, Ghent University, Ghent, Belgium.

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January 2020

The pitfalls and promise of liquid biopsies for diagnosing and treating solid tumors in children: a review.

Authors:
Ruben Van Paemel Roos Vlug Katleen De Preter Nadine Van Roy Frank Speleman Leen Willems Tim Lammens Geneviève Laureys Gudrun Schleiermacher Godelieve A M Tytgat Kathy Astrahantseff Hedwig Deubzer Bram De Wilde

Eur J Pediatr 2020 Feb 3;179(2):191-202. Epub 2020 Jan 3.

Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium.

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February 2020

Author Correction: Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes.

Authors:
Dries Rombaut Hua-Sheng Chiu Bieke Decaesteker Celine Everaert Nurten Yigit Agathe Peltier Isabelle Janoueix-Lerosey Christoph Bartenhagen Matthias Fischer Stephen Roberts Nicky D'Haene Katleen De Preter Frank Speleman Geertrui Denecker Pavel Sumazin Jo Vandesompele Steve Lefever Pieter Mestdagh

Sci Rep 2019 Jul 17;9(1):10536. Epub 2019 Jul 17.

Center for Medical Genetics, Ghent University, Ghent, 9000, Belgium.

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July 2019

Publisher Correction: In silico discovery of a FOXM1 driven embryonal signaling pathway in therapy resistant neuroblastoma tumors.

Authors:
Suzanne Vanhauwaert Bieke Decaesteker Sara De Brouwer Carina Leonelli Kaat Durinck Pieter Mestdagh Jo Vandesompele Karen Sermon Geertrui Denecker Christophe Van Neste Frank Speleman Katleen De Preter

Sci Rep 2019 Jun 4;9(1):8360. Epub 2019 Jun 4.

Center for Medical Genetics (CMGG), Ghent University, Ghent, Belgium.

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June 2019

DREAM target reactivation by core transcriptional regulators supports neuroblastoma growth.

Authors:
Bieke Decaesteker Katleen De Preter Frank Speleman

Mol Cell Oncol 2019 3;6(2):1565470. Epub 2019 Feb 3.

Center for Medical Genetics, Ghent University, Ghent, Belgium.

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February 2019

Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes.

Authors:
Dries Rombaut Hua-Sheng Chiu Bieke Decaesteker Celine Everaert Nurten Yigit Agathe Peltier Isabelle Janoueix-Lerosey Christoph Bartenhagen Matthias Fischer Stephen Roberts Nicky D'Haene Katleen De Preter Frank Speleman Geertrui Denecker Pavel Sumazin Jo Vandesompele Steve Lefever Pieter Mestdagh

Sci Rep 2019 04 5;9(1):5685. Epub 2019 Apr 5.

Center for Medical Genetics, Ghent University, Ghent, 9000, Belgium.

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April 2019

ALK positively regulates MYCN activity through repression of HBP1 expression.

Authors:
Shana Claeys Geertrui Denecker Kaat Durinck Bieke Decaesteker Liselot M Mus Siebe Loontiens Suzanne Vanhauwaert Kristina Althoff Caroline Wigerup Daniel Bexell Emmy Dolman Kai-Oliver Henrich Lea Wehrmann Ellen M Westerhout Jean-Baptiste Demoulin Candy Kumps Tom Van Maerken Genevieve Laureys Christophe Van Neste Bram De Wilde Olivier De Wever Frank Westermann Rogier Versteeg Jan J Molenaar Sven Påhlman Johannes H Schulte Katleen De Preter Frank Speleman

Oncogene 2019 04 11;38(15):2690-2705. Epub 2018 Dec 11.

Center for Medical Genetics Ghent (CMGG), Ghent University, Ghent, Belgium.

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April 2019

Circulating microRNA biomarkers for metastatic disease in neuroblastoma patients.

Authors:
Fjoralba Zeka Anneleen Decock Alan Van Goethem Katrien Vanderheyden Fleur Demuynck Tim Lammens Hetty H Helsmoortel Joëlle Vermeulen Rosa Noguera Ana P Berbegall Valérie Combaret Gudrun Schleiermacher Geneviève Laureys Alexander Schramm Johannes H Schulte Sven Rahmann Julie Bienertová-Vašků Pavel Mazánek Marta Jeison Shifra Ash Michael D Hogarty Mirthala Moreno-Smith Eveline Barbieri Jason Shohet Frank Berthold Tom Van Maerken Frank Speleman Matthias Fischer Katleen De Preter Pieter Mestdagh Jo Vandesompele

JCI Insight 2018 12 6;3(23). Epub 2018 Dec 6.

Center for Medical Genetics, Department of Biomolecular Medicine, and.

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December 2018

In silico discovery of a FOXM1 driven embryonal signaling pathway in therapy resistant neuroblastoma tumors.

Authors:
Suzanne Vanhauwaert Bieke Decaesteker Sara De Brouwer Carina Leonelli Kaat Durinck Pieter Mestdagh Jo Vandesompele Karen Sermon Geertrui Denecker Christophe Van Neste Frank Speleman Katleen De Preter

Sci Rep 2018 11 30;8(1):17468. Epub 2018 Nov 30.

Center for Medical Genetics (CMGG), Ghent University, Ghent, Belgium.

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November 2018

Integrated proximal proteomics reveals IRS2 as a determinant of cell survival in ALK-driven neuroblastoma.

Authors:
Kristina B Emdal Anna-Kathrine Pedersen Dorte B Bekker-Jensen Alicia Lundby Shana Claeys Katleen De Preter Frank Speleman Chiara Francavilla Jesper V Olsen

Sci Signal 2018 11 20;11(557). Epub 2018 Nov 20.

Proteomics Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, DK-2200 Copenhagen, Denmark.

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November 2018

TBX2 is a neuroblastoma core regulatory circuitry component enhancing MYCN/FOXM1 reactivation of DREAM targets.

Authors:
Bieke Decaesteker Geertrui Denecker Christophe Van Neste Emmy M Dolman Wouter Van Loocke Moritz Gartlgruber Carolina Nunes Fanny De Vloed Pauline Depuydt Karen Verboom Dries Rombaut Siebe Loontiens Jolien De Wyn Waleed M Kholosy Bianca Koopmans Anke H W Essing Carl Herrmann Daniel Dreidax Kaat Durinck Dieter Deforce Filip Van Nieuwerburgh Anton Henssen Rogier Versteeg Valentina Boeva Gudrun Schleiermacher Johan van Nes Pieter Mestdagh Suzanne Vanhauwaert Johannes H Schulte Frank Westermann Jan J Molenaar Katleen De Preter Frank Speleman

Nat Commun 2018 11 19;9(1):4866. Epub 2018 Nov 19.

Center for Medical Genetics, Ghent University, Ghent, 9000, Belgium.

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November 2018

Meta-mining of copy number profiles of high-risk neuroblastoma tumors.

Authors:
Pauline Depuydt Jan Koster Valentina Boeva Toby D Hocking Frank Speleman Gudrun Schleiermacher Katleen De Preter

Sci Data 2018 10 30;5:180240. Epub 2018 Oct 30.

Center for Medical Genetics, Ghent University, Ghent, Belgium.

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October 2018