Katleen De Preter

Katleen De Preter

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Katleen De Preter

Katleen De Preter

Publications by authors named "Katleen De Preter"

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DREAM target reactivation by core transcriptional regulators supports neuroblastoma growth.

Mol Cell Oncol 2019 3;6(2):1565470. Epub 2019 Feb 3.

Center for Medical Genetics, Ghent University, Ghent, Belgium.

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http://dx.doi.org/10.1080/23723556.2019.1565470DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6512935PMC
February 2019

Integrated proximal proteomics reveals IRS2 as a determinant of cell survival in ALK-driven neuroblastoma.

Sci Signal 2018 11 20;11(557). Epub 2018 Nov 20.

Proteomics Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, DK-2200 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/scisignal.aap9752DOI Listing
November 2018

Meta-mining of copy number profiles of high-risk neuroblastoma tumors.

Sci Data 2018 10 30;5:180240. Epub 2018 Oct 30.

Center for Medical Genetics, Ghent University, Ghent, Belgium.

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http://dx.doi.org/10.1038/sdata.2018.240DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6207068PMC
October 2018

IncGraph: Incremental graphlet counting for topology optimisation.

PLoS One 2018 26;13(4):e0195997. Epub 2018 Apr 26.

Data Mining and Modelling for Biomedicine group, VIB Center for Inflammation Research, Ghent, Belgium.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0195997PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5919487PMC
July 2018

Computational deconvolution of transcriptomics data from mixed cell populations.

Bioinformatics 2018 06;34(11):1969-1979

Center for Medical Genetics Ghent (CMGG), Ghent University, 9000 Ghent, Belgium.

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http://dx.doi.org/10.1093/bioinformatics/bty019DOI Listing
June 2018

Promoter-associated proteins of EPAS1 identified by enChIP-MS - A putative role of HDX as a negative regulator.

Biochem Biophys Res Commun 2018 05 26;499(2):291-298. Epub 2018 Mar 26.

Department of Pediatrics, Clinical Sciences, Lund University, Lund, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2018.03.150DOI Listing
May 2018

Early and late effects of pharmacological ALK inhibition on the neuroblastoma transcriptome.

Oncotarget 2017 Dec 6;8(63):106820-106832. Epub 2017 Nov 6.

Center for Medical Genetics, Ghent University, Ghent, Belgium.

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http://dx.doi.org/10.18632/oncotarget.22423DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5739776PMC
December 2017

Zipper plot: visualizing transcriptional activity of genomic regions.

BMC Bioinformatics 2017 May 2;18(1):231. Epub 2017 May 2.

Center for Medical Genetics, Ghent University, De Pintelaan 185, Ghent, Belgium.

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http://dx.doi.org/10.1186/s12859-017-1651-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5414305PMC
May 2017

Glutathione biosynthesis is upregulated at the initiation of MYCN-driven neuroblastoma tumorigenesis.

Mol Oncol 2016 06 2;10(6):866-78. Epub 2016 Mar 2.

Children's Cancer Institute, Lowy Cancer Research Centre, University of New South Wales, Randwick 2031, Australia; Kids Cancer Centre, Sydney Children's Hospital, Randwick 2031, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.molonc.2016.02.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5423163PMC
June 2016

Targeting MYCN-Driven Transcription By BET-Bromodomain Inhibition.

Clin Cancer Res 2016 05 2;22(10):2470-81. Epub 2015 Dec 2.

Department of Pediatric Oncology and Hematology, University Children's Hospital Essen, Essen, Germany. German Consortium for Translational Cancer Research (DKTK), Partner Site Essen/Duesseldorf, Essen, Germany. Neuroblastoma Genomics, B087, German Cancer Research Center (DKFZ), Heidelberg, Germany. Translational Neuro-Oncology, West German Cancer Center (WTZ), University Hospital Essen, University Duisburg-Essen, Essen, Germany. Centre for Medical Biotechnology, University Duisburg-Essen, Essen, Germany.

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http://dx.doi.org/10.1158/1078-0432.CCR-15-1449DOI Listing
May 2016

Individual patient risk stratification of high-risk neuroblastomas using a two-gene score suited for clinical use.

Int J Cancer 2015 Aug 20;137(4):868-77. Epub 2015 Feb 20.

Translational Cancer Research, Department of Laboratory Medicine, Lund University, Lund, Sweden.

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http://dx.doi.org/10.1002/ijc.29461DOI Listing
August 2015

Mutational dynamics between primary and relapse neuroblastomas.

Nat Genet 2015 Aug 29;47(8):872-7. Epub 2015 Jun 29.

1] Pediatric Oncology and Hematology, University Children's Hospital Essen, University of Duisburg-Essen, Essen, Germany. [2] Pediatric Oncology and Hematology, Charité University Medicine, Berlin, Germany. [3] German Cancer Research Center (DKFZ), German Cancer Consortium (DKTK), Heidelberg, Germany.

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http://search.proquest.com/openview/bef3fe020af3cd6708016aba
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http://dx.doi.org/10.1038/ng.3349DOI Listing
August 2015

A p53 drug response signature identifies prognostic genes in high-risk neuroblastoma.

PLoS One 2013 19;8(11):e79843. Epub 2013 Nov 19.

Texas Children's Cancer Center and Center for Cell and Gene Therapy, Department of Pediatrics, Baylor College of Medicine, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0079843PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3865347PMC
July 2014

Histone chaperone CHAF1A inhibits differentiation and promotes aggressive neuroblastoma.

Cancer Res 2014 Feb 12;74(3):765-74. Epub 2013 Dec 12.

Authors' Affiliations: Texas Children's Cancer Center and Center for Cell and Gene Therapy; Department of Surgery, Baylor College of Medicine, Houston, Texas; Center for Medical Genetics, Ghent University, Ghent, Belgium; CEINGE Biotecnologie Avanzate, Department of Biochemistry and Medical Biotechnology, University of Naples Federico II, Naples; Pediatric Research Institute, University of Padua, Padua; Paediatric Oncology and Haematology Unit "Lalla Seràgnoli," Sant'Orsola-Malpighi Hospital, University of Bologna, Bologna, Italy; and Department of Oncogenomics, Academic Medical Center, University of Amsterdam, Amsterdam, the Netherlands.

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http://cancerres.aacrjournals.org/content/74/3/765.full.pdf
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http://cancerres.aacrjournals.org/content/early/2013/12/12/0
Web Search
http://cancerres.aacrjournals.org/cgi/doi/10.1158/0008-5472.
Publisher Site
http://dx.doi.org/10.1158/0008-5472.CAN-13-1315DOI Listing
February 2014

Different Sarcocystis spp. are present in bovine eosinophilic myositis.

Vet Parasitol 2013 Nov 10;197(3-4):543-8. Epub 2013 Jun 10.

Laboratory of Veterinary Pathology, Department of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Salisburylaan 133, 9820 Merelbeke, Belgium.

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http://dx.doi.org/10.1016/j.vetpar.2013.06.001DOI Listing
November 2013

Evaluation of qPCR curve analysis methods for reliable biomarker discovery: bias, resolution, precision, and implications.

Methods 2013 Jan 3;59(1):32-46. Epub 2012 Sep 3.

Department of Anatomy, Embryology & Physiology, Academic Medical Center, Meibergdreef 15, 1100AZ Amsterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.ymeth.2012.08.011DOI Listing
January 2013

Isolation of disseminated neuroblastoma cells from bone marrow aspirates for pretreatment risk assessment by array comparative genomic hybridization.

Int J Cancer 2012 Mar 9;130(5):1098-108. Epub 2011 Jun 9.

Faculty of Pharmaceutical Sciences, Laboratory of Pharmaceutical Biotechnology, Ghent University, Ghent, Belgium.

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http://dx.doi.org/10.1002/ijc.26133DOI Listing
March 2012

Identification of tumoral glial precursor cells in neuroblastoma.

Cancer Lett 2011 Dec 17;312(1):73-81. Epub 2011 Aug 17.

Developmental Tumor Biology Laboratory, Hospital Sant Joan de Déu, Fundació Sant Joan de Déu, Barcelona, Spain.

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https://linkinghub.elsevier.com/retrieve/pii/S03043835110047
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http://dx.doi.org/10.1016/j.canlet.2011.08.004DOI Listing
December 2011

Neuroblastoma genetics and phenotype: a tale of heterogeneity.

Semin Cancer Biol 2011 Oct 4;21(4):238-44. Epub 2011 Aug 4.

Center for Medical Genetics, Ghent University Hospital (MRB), De Pintelaan 185, B-9000 Ghent, Belgium.

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http://dx.doi.org/10.1016/j.semcancer.2011.07.003DOI Listing
October 2011

Measurable impact of RNA quality on gene expression results from quantitative PCR.

Nucleic Acids Res 2011 May 11;39(9):e63. Epub 2011 Feb 11.

Centre for Medical Genetics, Ghent University Hospital, De Pintelaan 185, B-9000 Ghent, Belgium.

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http://dx.doi.org/10.1093/nar/gkr065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3089491PMC
May 2011

Predicting outcomes for children with neuroblastoma.

Discov Med 2010 Jul;10(50):29-36

Center for Medical Genetics, Ghent University Hospital, Ghent, B-9000, Belgium.

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July 2010

Low-cost dedicated mini-arrays for high-throughput analysis of DNA copy-number alterations in neuroblastoma.

Cancer Lett 2008 Sep 13;269(1):111-6. Epub 2008 Jun 13.

Center for Medical Genetics Ghent, Ghent University Hospital, 2nd Floor, Room 120.038, De Pintelaan 185, MRB2, 9000 Ghent, Belgium.

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http://dx.doi.org/10.1016/j.canlet.2008.04.031DOI Listing
September 2008

Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions.

Nucleic Acids Res 2008 Apr 16;36(7):e43. Epub 2008 Mar 16.

Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, B-9000 Ghent, Belgium.

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http://dx.doi.org/10.1093/nar/gkn114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2367735PMC
April 2008

Aberrant splicing of the PTPRD gene mimics microdeletions identified at this locus in neuroblastomas.

Genes Chromosomes Cancer 2008 Mar;47(3):197-202

Department of Pediatrics, Greehey Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA.

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http://dx.doi.org/10.1002/gcc.20521DOI Listing
March 2008

Detection of DNA copy number alterations in cancer by array comparative genomic hybridization.

Genet Med 2007 Sep;9(9):574-84

Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium.

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http://dx.doi.org/10.1097/gim.0b013e318145b25bDOI Listing
September 2007

A detailed inventory of DNA copy number alterations in four commonly used Hodgkin's lymphoma cell lines.

Haematologica 2007 Jul;92(7):913-20

Centre for Medical Genetics, Ghent University Hospital, Ghent, Belgium.

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http://dx.doi.org/10.3324/haematol.11073DOI Listing
July 2007

ID2 expression in neuroblastoma does not correlate to MYCN levels and lacks prognostic value.

Oncogene 2003 Jan;22(3):456-60

Center for Medical Genetics, Ghent University Hospital, Belgium.

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http://dx.doi.org/10.1038/sj.onc.1206148DOI Listing
January 2003