Kathryn Roeder

Kathryn Roeder

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Kathryn Roeder

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A UNIFIED STATISTICAL FRAMEWORK FOR SINGLE CELL AND BULK RNA SEQUENCING DATA.

Ann Appl Stat 2018 Mar 9;12(1):609-632. Epub 2018 Mar 9.

Carnegie Mellon University.

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http://dx.doi.org/10.1214/17-AOAS1110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6114100PMC
March 2018

Using multiple measurements of tissue to estimate subject- and cell-type-specific gene expression.

Bioinformatics 2019 Aug 10. Epub 2019 Aug 10.

Department of Statistics and Data Science, Carnegie Mellon University, Pittsburgh, PA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz619DOI Listing
August 2019

Resting-State Functional Network Organization Is Stable Across Adolescent Development for Typical and Psychosis Spectrum Youth.

Schizophr Bull 2019 Aug 19. Epub 2019 Aug 19.

Department of Psychiatry, University of Pittsburgh, Pittsburgh, PA.

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http://dx.doi.org/10.1093/schbul/sbz053DOI Listing
August 2019

Identification of common genetic risk variants for autism spectrum disorder.

Nat Genet 2019 03 25;51(3):431-444. Epub 2019 Feb 25.

The Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH, Aarhus, Denmark.

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http://dx.doi.org/10.1038/s41588-019-0344-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6454898PMC
March 2019

Semisoft clustering of single-cell data.

Proc Natl Acad Sci U S A 2019 01 26;116(2):466-471. Epub 2018 Dec 26.

Department of Statistics and Data Science, Carnegie Mellon University, Pittsburgh, PA 15213;

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http://dx.doi.org/10.1073/pnas.1817715116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6329952PMC
January 2019

An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders.

Nat Genet 2018 07 11;50(7):1032-1040. Epub 2018 Jun 11.

Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY, USA.

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http://dx.doi.org/10.1038/s41588-018-0130-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6314957PMC
July 2018

Heritable Variation, With Little or No Maternal Effect, Accounts for Recurrence Risk to Autism Spectrum Disorder in Sweden.

Biol Psychiatry 2018 04 21;83(7):589-597. Epub 2017 Sep 21.

Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden; Seaver Autism Center for Research and Treatment, Icahn School of Medicine at Mount Sinai, New York, New York; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York.

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http://dx.doi.org/10.1016/j.biopsych.2017.09.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5880679PMC
April 2018

A UNIFIED STATISTICAL FRAMEWORK FOR SINGLE CELL AND BULK RNA SEQUENCING DATA.

Ann Appl Stat 2018 Mar 9;12(1):609-632. Epub 2018 Mar 9.

Carnegie Mellon University.

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http://dx.doi.org/10.1214/17-AOAS1110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6114100PMC
March 2018

Global spectral clustering in dynamic networks.

Proc Natl Acad Sci U S A 2018 01 16;115(5):927-932. Epub 2018 Jan 16.

Department of Statistics and Data Science, Carnegie Mellon University, Pittsburgh, PA 15213;

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http://dx.doi.org/10.1073/pnas.1718449115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798376PMC
January 2018

TESTING HIGH-DIMENSIONAL COVARIANCE MATRICES, WITH APPLICATION TO DETECTING SCHIZOPHRENIA RISK GENES.

Ann Appl Stat 2017 Sep 5;11(3):1810-1831. Epub 2017 Oct 5.

Department of Statistics, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, Pennsylvania 15213, USA.

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http://dx.doi.org/10.1214/17-AOAS1062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5655846PMC
September 2017

The Yin and Yang of Autism Genetics: How Rare De Novo and Common Variations Affect Liability.

Annu Rev Genomics Hum Genet 2017 08 19;18:167-187. Epub 2017 Apr 19.

Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15213; email:

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http://dx.doi.org/10.1146/annurev-genom-083115-022647DOI Listing
August 2017

Peer Victimization and Harsh Parenting Predict Cognitive Diatheses for Depression in Children and Adolescents.

J Clin Child Adolesc Psychol 2016 Sep-Oct;45(5):668-680. Epub 2015 Mar 9.

a Department of Psychology and Human Development , Vanderbilt University.

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http://dx.doi.org/10.1080/15374416.2015.1004679DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4564367PMC
June 2017

A Method to Exploit the Structure of Genetic Ancestry Space to Enhance Case-Control Studies.

Am J Hum Genet 2016 05 14;98(5):857-868. Epub 2016 Apr 14.

Department of Statistics, Carnegie Mellon University, Pittsburgh, PA 15213, USA; Computational Biology Department, Carnegie Mellon University, Pittsburgh, PA 15213, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2016.02.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4864319PMC
May 2016

NETWORK ASSISTED ANALYSIS TO REVEAL THE GENETIC BASIS OF AUTISM.

Ann Appl Stat 2015;9(3):1571-1600. Epub 2015 Nov 2.

Department of Statistics, Carnegie Mellon University, 5000 Forbes Avenue, Baker Hall 13, Pittsburgh, Pennsylvania 15213, USA.

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http://dx.doi.org/10.1214/15-AOAS844DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4851445PMC
November 2015

The autism-associated chromatin modifier CHD8 regulates other autism risk genes during human neurodevelopment.

Nat Commun 2015 Mar 10;6:6404. Epub 2015 Mar 10.

1] Department of Genetics, Yale School of Medicine, 333 Cedar Street, New Haven, Connecticut 06510, USA [2] Kavli Institute for Neuroscience, Yale School of Medicine, PO Box 208001, New Haven, Connecticut 06520, USA.

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http://dx.doi.org/10.1038/ncomms7404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4355952PMC
March 2015

Synaptic, transcriptional and chromatin genes disrupted in autism.

Positive Semidefinite Rank-based Correlation Matrix Estimation with Application to Semiparametric Graph Estimation.

J Comput Graph Stat 2014 Oct;23(4):895-922

Department of Operations Research Research and Financial Engineering, Princeton University, Princeton, NJ 08544, USA;

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http://dx.doi.org/10.1080/10618600.2013.858633DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4219653PMC
October 2014

A framework for the interpretation of de novo mutation in human disease.

Nat Genet 2014 Sep 3;46(9):944-50. Epub 2014 Aug 3.

1] Analytic and Translational Genetics Unit, Department of Medicine, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, USA. [2] Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA. [3] Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1038/ng.3050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222185PMC
September 2014

Most genetic risk for autism resides with common variation.

Nat Genet 2014 Aug 20;46(8):881-5. Epub 2014 Jul 20.

1] Seaver Autism Center for Research and Treatment, Icahn School of Medicine at Mount Sinai, New York, New York, USA. [2] Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York, USA. [3] Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA. [4] Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, New York, USA. [5] Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, New York, USA. [6] The Mindich Child Health and Development Institute, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

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http://dx.doi.org/10.1038/ng.3039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4137411PMC
August 2014

Transcriptional consequences of 16p11.2 deletion and duplication in mouse cortex and multiplex autism families.

Am J Hum Genet 2014 Jun;94(6):870-83

Molecular Neurogenetics Unit and Psychiatric and Neurodevelopmental Genetics Unit, Center for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA 02141, USA; Departments of Neurology, Genetics, Psychiatry, and Pathology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02141, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.05.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4121471PMC
June 2014

MIRA: mutual information-based reporter algorithm for metabolic networks.

Bioinformatics 2014 Jun;30(12):i175-84

Lane Center for Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA 15213 and Department of Electrical Engineering and Computer Science, School of Engineering, Case Western Reserve University, Cleveland, OH, USA 44106.

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http://dx.doi.org/10.1093/bioinformatics/btu290DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4058943PMC
June 2014

Clustering and alignment of polymorphic sequences for HLA-DRB1 genotyping.

PLoS One 2013 28;8(3):e59835. Epub 2013 Mar 28.

Department of Pediatrics, Division of Immunogenetics, Children's Hospital of Pittsburgh of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0059835PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3610899PMC
January 2014

Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs.

Authors:
S Hong Lee Stephan Ripke Benjamin M Neale Stephen V Faraone Shaun M Purcell Roy H Perlis Bryan J Mowry Anita Thapar Michael E Goddard John S Witte Devin Absher Ingrid Agartz Huda Akil Farooq Amin Ole A Andreassen Adebayo Anjorin Richard Anney Verneri Anttila Dan E Arking Philip Asherson Maria H Azevedo Lena Backlund Judith A Badner Anthony J Bailey Tobias Banaschewski Jack D Barchas Michael R Barnes Thomas B Barrett Nicholas Bass Agatino Battaglia Michael Bauer Mònica Bayés Frank Bellivier Sarah E Bergen Wade Berrettini Catalina Betancur Thomas Bettecken Joseph Biederman Elisabeth B Binder Donald W Black Douglas H R Blackwood Cinnamon S Bloss Michael Boehnke Dorret I Boomsma Gerome Breen René Breuer Richard Bruggeman Paul Cormican Nancy G Buccola Jan K Buitelaar William E Bunney Joseph D Buxbaum William F Byerley Enda M Byrne Sian Caesar Wiepke Cahn Rita M Cantor Miguel Casas Aravinda Chakravarti Kimberly Chambert Khalid Choudhury Sven Cichon C Robert Cloninger David A Collier Edwin H Cook Hilary Coon Bru Cormand Aiden Corvin William H Coryell David W Craig Ian W Craig Jennifer Crosbie Michael L Cuccaro David Curtis Darina Czamara Susmita Datta Geraldine Dawson Richard Day Eco J De Geus Franziska Degenhardt Srdjan Djurovic Gary J Donohoe Alysa E Doyle Jubao Duan Frank Dudbridge Eftichia Duketis Richard P Ebstein Howard J Edenberg Josephine Elia Sean Ennis Bruno Etain Ayman Fanous Anne E Farmer I Nicol Ferrier Matthew Flickinger Eric Fombonne Tatiana Foroud Josef Frank Barbara Franke Christine Fraser Robert Freedman Nelson B Freimer Christine M Freitag Marion Friedl Louise Frisén Louise Gallagher Pablo V Gejman Lyudmila Georgieva Elliot S Gershon Daniel H Geschwind Ina Giegling Michael Gill Scott D Gordon Katherine Gordon-Smith Elaine K Green Tiffany A Greenwood Dorothy E Grice Magdalena Gross Detelina Grozeva Weihua Guan Hugh Gurling Lieuwe De Haan Jonathan L Haines Hakon Hakonarson Joachim Hallmayer Steven P Hamilton Marian L Hamshere Thomas F Hansen Annette M Hartmann Martin Hautzinger Andrew C Heath Anjali K Henders Stefan Herms Ian B Hickie Maria Hipolito Susanne Hoefels Peter A Holmans Florian Holsboer Witte J Hoogendijk Jouke-Jan Hottenga Christina M Hultman Vanessa Hus Andrés Ingason Marcus Ising Stéphane Jamain Edward G Jones Ian Jones Lisa Jones Jung-Ying Tzeng Anna K Kähler René S Kahn Radhika Kandaswamy Matthew C Keller James L Kennedy Elaine Kenny Lindsey Kent Yunjung Kim George K Kirov Sabine M Klauck Lambertus Klei James A Knowles Martin A Kohli Daniel L Koller Bettina Konte Ania Korszun Lydia Krabbendam Robert Krasucki Jonna Kuntsi Phoenix Kwan Mikael Landén Niklas Långström Mark Lathrop Jacob Lawrence William B Lawson Marion Leboyer David H Ledbetter Phil H Lee Todd Lencz Klaus-Peter Lesch Douglas F Levinson Cathryn M Lewis Jun Li Paul Lichtenstein Jeffrey A Lieberman Dan-Yu Lin Don H Linszen Chunyu Liu Falk W Lohoff Sandra K Loo Catherine Lord Jennifer K Lowe Susanne Lucae Donald J MacIntyre Pamela A F Madden Elena Maestrini Patrik K E Magnusson Pamela B Mahon Wolfgang Maier Anil K Malhotra Shrikant M Mane Christa L Martin Nicholas G Martin Manuel Mattheisen Keith Matthews Morten Mattingsdal Steven A McCarroll Kevin A McGhee James J McGough Patrick J McGrath Peter McGuffin Melvin G McInnis Andrew McIntosh Rebecca McKinney Alan W McLean Francis J McMahon William M McMahon Andrew McQuillin Helena Medeiros Sarah E Medland Sandra Meier Ingrid Melle Fan Meng Jobst Meyer Christel M Middeldorp Lefkos Middleton Vihra Milanova Ana Miranda Anthony P Monaco Grant W Montgomery Jennifer L Moran Daniel Moreno-De-Luca Gunnar Morken Derek W Morris Eric M Morrow Valentina Moskvina Pierandrea Muglia Thomas W Mühleisen Walter J Muir Bertram Müller-Myhsok Michael Murtha Richard M Myers Inez Myin-Germeys Michael C Neale Stan F Nelson Caroline M Nievergelt Ivan Nikolov Vishwajit Nimgaonkar Willem A Nolen Markus M Nöthen John I Nurnberger Evaristus A Nwulia Dale R Nyholt Colm O'Dushlaine Robert D Oades Ann Olincy Guiomar Oliveira Line Olsen Roel A Ophoff Urban Osby Michael J Owen Aarno Palotie Jeremy R Parr Andrew D Paterson Carlos N Pato Michele T Pato Brenda W Penninx Michele L Pergadia Margaret A Pericak-Vance Benjamin S Pickard Jonathan Pimm Joseph Piven Danielle Posthuma James B Potash Fritz Poustka Peter Propping Vinay Puri Digby J Quested Emma M Quinn Josep Antoni Ramos-Quiroga Henrik B Rasmussen Soumya Raychaudhuri Karola Rehnström Andreas Reif Marta Ribasés John P Rice Marcella Rietschel Kathryn Roeder Herbert Roeyers Lizzy Rossin Aribert Rothenberger Guy Rouleau Douglas Ruderfer Dan Rujescu Alan R Sanders Stephan J Sanders Susan L Santangelo Joseph A Sergeant Russell Schachar Martin Schalling Alan F Schatzberg William A Scheftner Gerard D Schellenberg Stephen W Scherer Nicholas J Schork Thomas G Schulze Johannes Schumacher Markus Schwarz Edward Scolnick Laura J Scott Jianxin Shi Paul D Shilling Stanley I Shyn Jeremy M Silverman Susan L Slager Susan L Smalley Johannes H Smit Erin N Smith Edmund J S Sonuga-Barke David St Clair Matthew State Michael Steffens Hans-Christoph Steinhausen John S Strauss Jana Strohmaier T Scott Stroup James S Sutcliffe Peter Szatmari Szabocls Szelinger Srinivasa Thirumalai Robert C Thompson Alexandre A Todorov Federica Tozzi Jens Treutlein Manfred Uhr Edwin J C G van den Oord Gerard Van Grootheest Jim Van Os Astrid M Vicente Veronica J Vieland John B Vincent Peter M Visscher Christopher A Walsh Thomas H Wassink Stanley J Watson Myrna M Weissman Thomas Werge Thomas F Wienker Ellen M Wijsman Gonneke Willemsen Nigel Williams A Jeremy Willsey Stephanie H Witt Wei Xu Allan H Young Timothy W Yu Stanley Zammit Peter P Zandi Peng Zhang Frans G Zitman Sebastian Zöllner Bernie Devlin John R Kelsoe Pamela Sklar Mark J Daly Michael C O'Donovan Nicholas Craddock Patrick F Sullivan Jordan W Smoller Kenneth S Kendler Naomi R Wray

Nat Genet 2013 Sep 11;45(9):984-94. Epub 2013 Aug 11.

The University of Queensland, Queensland Brain Institute, Brisbane, Queensland, Australia.

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http://dx.doi.org/10.1038/ng.2711DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3800159PMC
September 2013

REFINING GENETICALLY INFERRED RELATIONSHIPS USING TREELET COVARIANCE SMOOTHING.

Ann Appl Stat 2013 Jun;7(2):669-690

West Chester University, Carnegie Mellon University, University of Pittsburgh School of Medicine, University of Pittsburgh School of Medicine and Carnegie Mellon University.

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http://dx.doi.org/10.1214/12-AOAS598DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3935431PMC
June 2013

The autism sequencing consortium: large-scale, high-throughput sequencing in autism spectrum disorders.

Neuron 2012 Dec;76(6):1052-6

Seaver Autism Center, Departments of Psychiatry, Neuroscience, and Genetics and Genomic Sciences, and the Friedman Brain Institute, Mount Sinai School of Medicine, New York, NY 10029, USA.

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http://dx.doi.org/10.1016/j.neuron.2012.12.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3863639PMC
December 2012

Individual common variants exert weak effects on the risk for autism spectrum disorders.

Authors:
Richard Anney Lambertus Klei Dalila Pinto Joana Almeida Elena Bacchelli Gillian Baird Nadia Bolshakova Sven Bölte Patrick F Bolton Thomas Bourgeron Sean Brennan Jessica Brian Jillian Casey Judith Conroy Catarina Correia Christina Corsello Emily L Crawford Maretha de Jonge Richard Delorme Eftichia Duketis Frederico Duque Annette Estes Penny Farrar Bridget A Fernandez Susan E Folstein Eric Fombonne John Gilbert Christopher Gillberg Joseph T Glessner Andrew Green Jonathan Green Stephen J Guter Elizabeth A Heron Richard Holt Jennifer L Howe Gillian Hughes Vanessa Hus Roberta Igliozzi Suma Jacob Graham P Kenny Cecilia Kim Alexander Kolevzon Vlad Kustanovich Clara M Lajonchere Janine A Lamb Miriam Law-Smith Marion Leboyer Ann Le Couteur Bennett L Leventhal Xiao-Qing Liu Frances Lombard Catherine Lord Linda Lotspeich Sabata C Lund Tiago R Magalhaes Carine Mantoulan Christopher J McDougle Nadine M Melhem Alison Merikangas Nancy J Minshew Ghazala K Mirza Jeff Munson Carolyn Noakes Gudrun Nygren Katerina Papanikolaou Alistair T Pagnamenta Barbara Parrini Tara Paton Andrew Pickles David J Posey Fritz Poustka Jiannis Ragoussis Regina Regan Wendy Roberts Kathryn Roeder Bernadette Roge Michael L Rutter Sabine Schlitt Naisha Shah Val C Sheffield Latha Soorya Inês Sousa Vera Stoppioni Nuala Sykes Raffaella Tancredi Ann P Thompson Susanne Thomson Ana Tryfon John Tsiantis Herman Van Engeland John B Vincent Fred Volkmar J A S Vorstman Simon Wallace Kirsty Wing Kerstin Wittemeyer Shawn Wood Danielle Zurawiecki Lonnie Zwaigenbaum Anthony J Bailey Agatino Battaglia Rita M Cantor Hilary Coon Michael L Cuccaro Geraldine Dawson Sean Ennis Christine M Freitag Daniel H Geschwind Jonathan L Haines Sabine M Klauck William M McMahon Elena Maestrini Judith Miller Anthony P Monaco Stanley F Nelson John I Nurnberger Guiomar Oliveira Jeremy R Parr Margaret A Pericak-Vance Joseph Piven Gerard D Schellenberg Stephen W Scherer Astrid M Vicente Thomas H Wassink Ellen M Wijsman Catalina Betancur Joseph D Buxbaum Edwin H Cook Louise Gallagher Michael Gill Joachim Hallmayer Andrew D Paterson James S Sutcliffe Peter Szatmari Veronica J Vieland Hakon Hakonarson Bernie Devlin

Hum Mol Genet 2012 Nov 26;21(21):4781-92. Epub 2012 Jul 26.

Autism Genetics Group, Department of Psychiatry, School of Medicine, Trinity College, Dublin 8, Ireland.

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http://dx.doi.org/10.1093/hmg/dds301DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3471395PMC
November 2012

Vitamin D insufficiency and severe asthma exacerbations in Puerto Rican children.

Am J Respir Crit Care Med 2012 Jul 31;186(2):140-6. Epub 2012 May 31.

Division of Pediatric Pulmonary Medicine, Allergy and Immunology, Department of Pediatrics, Children's Hospital of Pittsburgh of UPMC, 4401 Penn Avenue, Pittsburgh, PA 15224, USA.

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http://dx.doi.org/10.1164/rccm.201203-0431OCDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3406083PMC
July 2012

African ancestry and lung function in Puerto Rican children.

J Allergy Clin Immunol 2012 Jun 4;129(6):1484-90.e6. Epub 2012 May 4.

Division of Pediatric Pulmonary Medicine, Allergy and Immunology, Department of Pediatrics, Children's Hospital of Pittsburgh of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA 15224, USA.

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http://dx.doi.org/10.1016/j.jaci.2012.03.035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367038PMC
June 2012

The huge Package for High-dimensional Undirected Graph Estimation in R.

J Mach Learn Res 2012 Apr;13:1059-1062

Department of Statistics, Carnegie Mellon University, Pittsburgh, PA, 15213,

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4729207PMC
April 2012

The huge Package for High-dimensional Undirected Graph Estimation in R.

J Mach Learn Res 2012 Apr;13:1059-1062

Department of Statistics, Carnegie Mellon University, Pittsburgh, PA, 15213,

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4729207PMC
April 2012

Eating disorder symptoms among college students: prevalence, persistence, correlates, and treatment-seeking.

J Am Coll Health 2011 ;59(8):700-7

Department of Health Management and Policy, University of Michigan, Ann Arbor, Michigan 48109-2029, USA.

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http://www.tandfonline.com/doi/abs/10.1080/07448481.2010.546
Publisher Site
http://dx.doi.org/10.1080/07448481.2010.546461DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3721327PMC
February 2012

TOMM40 poly-T repeat lengths, age of onset and psychosis risk in Alzheimer disease.

Neurobiol Aging 2011 Dec 5;32(12):2328.e1-9. Epub 2011 Aug 5.

Department of Statistics, Carnegie Mellon University, Pittsburgh, PA, USA.

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http://dx.doi.org/10.1016/j.neurobiolaging.2011.06.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3192304PMC
December 2011

TOMM40 poly-T repeat lengths, age of onset and psychosis risk in Alzheimer disease.

Neurobiol Aging 2011 Dec 5;32(12):2328.e1-9. Epub 2011 Aug 5.

Department of Statistics, Carnegie Mellon University, Pittsburgh, PA, USA.

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http://dx.doi.org/10.1016/j.neurobiolaging.2011.06.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3192304PMC
December 2011

Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.

Neuron 2011 Jun;70(5):863-85

Program on Neurogenetics, Yale University School of Medicine, 230 South Frontage Road, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1016/j.neuron.2011.05.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3939065PMC
June 2011

STRUCTURED, SPARSE REGRESSION WITH APPLICATION TO HIV DRUG RESISTANCE.

Ann Appl Stat 2011 Jun;5(2A):628-644

Carnegie Mellon University, Department of Statistics, Pittsburgh, PA 15213 USA, , ,

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http://dx.doi.org/10.1214/10-AOAS428DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3165199PMC
June 2011

Measuring pain medication expectancies in adults treated for substance use disorders.

Drug Alcohol Depend 2011 May 15;115(1-2):51-6. Epub 2010 Dec 15.

Department of Veterans Affairs, Health Services Research & Development, 2215 Fuller Road, (152), Ann Arbor, MI 48105, USA.

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http://dx.doi.org/10.1016/j.drugalcdep.2010.10.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051016PMC
May 2011

Do common variants play a role in risk for autism? Evidence and theoretical musings.

Brain Res 2011 Mar 12;1380:78-84. Epub 2010 Nov 12.

Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA.

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http://dx.doi.org/10.1016/j.brainres.2010.11.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3638767PMC
March 2011

Testing for an unusual distribution of rare variants.

PLoS Genet 2011 Mar 3;7(3):e1001322. Epub 2011 Mar 3.

The Center for Human Genetic Research, Massachusetts General Hospital, Boston, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1001322DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3048375PMC
March 2011

Stability Approach to Regularization Selection (StARS) for High Dimensional Graphical Models.

Adv Neural Inf Process Syst 2010 Dec;24(2):1432-1440

Carnegie Mellon University, Pittsburgh, PA 15213.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4138724PMC
December 2010

A genome-wide scan for common alleles affecting risk for autism.

Authors:
Richard Anney Lambertus Klei Dalila Pinto Regina Regan Judith Conroy Tiago R Magalhaes Catarina Correia Brett S Abrahams Nuala Sykes Alistair T Pagnamenta Joana Almeida Elena Bacchelli Anthony J Bailey Gillian Baird Agatino Battaglia Tom Berney Nadia Bolshakova Sven Bölte Patrick F Bolton Thomas Bourgeron Sean Brennan Jessica Brian Andrew R Carson Guillermo Casallo Jillian Casey Su H Chu Lynne Cochrane Christina Corsello Emily L Crawford Andrew Crossett Geraldine Dawson Maretha de Jonge Richard Delorme Irene Drmic Eftichia Duketis Frederico Duque Annette Estes Penny Farrar Bridget A Fernandez Susan E Folstein Eric Fombonne Christine M Freitag John Gilbert Christopher Gillberg Joseph T Glessner Jeremy Goldberg Jonathan Green Stephen J Guter Hakon Hakonarson Elizabeth A Heron Matthew Hill Richard Holt Jennifer L Howe Gillian Hughes Vanessa Hus Roberta Igliozzi Cecilia Kim Sabine M Klauck Alexander Kolevzon Olena Korvatska Vlad Kustanovich Clara M Lajonchere Janine A Lamb Magdalena Laskawiec Marion Leboyer Ann Le Couteur Bennett L Leventhal Anath C Lionel Xiao-Qing Liu Catherine Lord Linda Lotspeich Sabata C Lund Elena Maestrini William Mahoney Carine Mantoulan Christian R Marshall Helen McConachie Christopher J McDougle Jane McGrath William M McMahon Nadine M Melhem Alison Merikangas Ohsuke Migita Nancy J Minshew Ghazala K Mirza Jeff Munson Stanley F Nelson Carolyn Noakes Abdul Noor Gudrun Nygren Guiomar Oliveira Katerina Papanikolaou Jeremy R Parr Barbara Parrini Tara Paton Andrew Pickles Joseph Piven David J Posey Annemarie Poustka Fritz Poustka Aparna Prasad Jiannis Ragoussis Katy Renshaw Jessica Rickaby Wendy Roberts Kathryn Roeder Bernadette Roge Michael L Rutter Laura J Bierut John P Rice Jeff Salt Katherine Sansom Daisuke Sato Ricardo Segurado Lili Senman Naisha Shah Val C Sheffield Latha Soorya Inês Sousa Vera Stoppioni Christina Strawbridge Raffaella Tancredi Katherine Tansey Bhooma Thiruvahindrapduram Ann P Thompson Susanne Thomson Ana Tryfon John Tsiantis Herman Van Engeland John B Vincent Fred Volkmar Simon Wallace Kai Wang Zhouzhi Wang Thomas H Wassink Kirsty Wing Kerstin Wittemeyer Shawn Wood Brian L Yaspan Danielle Zurawiecki Lonnie Zwaigenbaum Catalina Betancur Joseph D Buxbaum Rita M Cantor Edwin H Cook Hilary Coon Michael L Cuccaro Louise Gallagher Daniel H Geschwind Michael Gill Jonathan L Haines Judith Miller Anthony P Monaco John I Nurnberger Andrew D Paterson Margaret A Pericak-Vance Gerard D Schellenberg Stephen W Scherer James S Sutcliffe Peter Szatmari Astrid M Vicente Veronica J Vieland Ellen M Wijsman Bernie Devlin Sean Ennis Joachim Hallmayer

Hum Mol Genet 2010 Oct 27;19(20):4072-82. Epub 2010 Jul 27.

Department of Psychiatry, School of Medicine, Trinity College, Dublin 8, Ireland.

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October 2010

Telephone-based mutual peer support for depression: a pilot study.

Chronic Illn 2010 Sep 15;6(3):183-91. Epub 2010 Jul 15.

Department of Psychiatry, University of Michigan, Ann Arbor, Michigan, USA.

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September 2010

Functional impact of global rare copy number variation in autism spectrum disorders.

Authors:
Dalila Pinto Alistair T Pagnamenta Lambertus Klei Richard Anney Daniele Merico Regina Regan Judith Conroy Tiago R Magalhaes Catarina Correia Brett S Abrahams Joana Almeida Elena Bacchelli Gary D Bader Anthony J Bailey Gillian Baird Agatino Battaglia Tom Berney Nadia Bolshakova Sven Bölte Patrick F Bolton Thomas Bourgeron Sean Brennan Jessica Brian Susan E Bryson Andrew R Carson Guillermo Casallo Jillian Casey Brian H Y Chung Lynne Cochrane Christina Corsello Emily L Crawford Andrew Crossett Cheryl Cytrynbaum Geraldine Dawson Maretha de Jonge Richard Delorme Irene Drmic Eftichia Duketis Frederico Duque Annette Estes Penny Farrar Bridget A Fernandez Susan E Folstein Eric Fombonne Christine M Freitag John Gilbert Christopher Gillberg Joseph T Glessner Jeremy Goldberg Andrew Green Jonathan Green Stephen J Guter Hakon Hakonarson Elizabeth A Heron Matthew Hill Richard Holt Jennifer L Howe Gillian Hughes Vanessa Hus Roberta Igliozzi Cecilia Kim Sabine M Klauck Alexander Kolevzon Olena Korvatska Vlad Kustanovich Clara M Lajonchere Janine A Lamb Magdalena Laskawiec Marion Leboyer Ann Le Couteur Bennett L Leventhal Anath C Lionel Xiao-Qing Liu Catherine Lord Linda Lotspeich Sabata C Lund Elena Maestrini William Mahoney Carine Mantoulan Christian R Marshall Helen McConachie Christopher J McDougle Jane McGrath William M McMahon Alison Merikangas Ohsuke Migita Nancy J Minshew Ghazala K Mirza Jeff Munson Stanley F Nelson Carolyn Noakes Abdul Noor Gudrun Nygren Guiomar Oliveira Katerina Papanikolaou Jeremy R Parr Barbara Parrini Tara Paton Andrew Pickles Marion Pilorge Joseph Piven Chris P Ponting David J Posey Annemarie Poustka Fritz Poustka Aparna Prasad Jiannis Ragoussis Katy Renshaw Jessica Rickaby Wendy Roberts Kathryn Roeder Bernadette Roge Michael L Rutter Laura J Bierut John P Rice Jeff Salt Katherine Sansom Daisuke Sato Ricardo Segurado Ana F Sequeira Lili Senman Naisha Shah Val C Sheffield Latha Soorya Inês Sousa Olaf Stein Nuala Sykes Vera Stoppioni Christina Strawbridge Raffaella Tancredi Katherine Tansey Bhooma Thiruvahindrapduram Ann P Thompson Susanne Thomson Ana Tryfon John Tsiantis Herman Van Engeland John B Vincent Fred Volkmar Simon Wallace Kai Wang Zhouzhi Wang Thomas H Wassink Caleb Webber Rosanna Weksberg Kirsty Wing Kerstin Wittemeyer Shawn Wood Jing Wu Brian L Yaspan Danielle Zurawiecki Lonnie Zwaigenbaum Joseph D Buxbaum Rita M Cantor Edwin H Cook Hilary Coon Michael L Cuccaro Bernie Devlin Sean Ennis Louise Gallagher Daniel H Geschwind Michael Gill Jonathan L Haines Joachim Hallmayer Judith Miller Anthony P Monaco John I Nurnberger Andrew D Paterson Margaret A Pericak-Vance Gerard D Schellenberg Peter Szatmari Astrid M Vicente Veronica J Vieland Ellen M Wijsman Stephen W Scherer James S Sutcliffe Catalina Betancur

Nature 2010 Jul 9;466(7304):368-72. Epub 2010 Jun 9.

The Centre for Applied Genomics and Program in Genetics and Genomic Biology, The Hospital for Sick Children, Toronto, Ontario M5G 1L7, Canada.

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July 2010

Functional impact of global rare copy number variation in autism spectrum disorders.

Authors:
Dalila Pinto Alistair T Pagnamenta Lambertus Klei Richard Anney Daniele Merico Regina Regan Judith Conroy Tiago R Magalhaes Catarina Correia Brett S Abrahams Joana Almeida Elena Bacchelli Gary D Bader Anthony J Bailey Gillian Baird Agatino Battaglia Tom Berney Nadia Bolshakova Sven Bölte Patrick F Bolton Thomas Bourgeron Sean Brennan Jessica Brian Susan E Bryson Andrew R Carson Guillermo Casallo Jillian Casey Brian H Y Chung Lynne Cochrane Christina Corsello Emily L Crawford Andrew Crossett Cheryl Cytrynbaum Geraldine Dawson Maretha de Jonge Richard Delorme Irene Drmic Eftichia Duketis Frederico Duque Annette Estes Penny Farrar Bridget A Fernandez Susan E Folstein Eric Fombonne Christine M Freitag John Gilbert Christopher Gillberg Joseph T Glessner Jeremy Goldberg Andrew Green Jonathan Green Stephen J Guter Hakon Hakonarson Elizabeth A Heron Matthew Hill Richard Holt Jennifer L Howe Gillian Hughes Vanessa Hus Roberta Igliozzi Cecilia Kim Sabine M Klauck Alexander Kolevzon Olena Korvatska Vlad Kustanovich Clara M Lajonchere Janine A Lamb Magdalena Laskawiec Marion Leboyer Ann Le Couteur Bennett L Leventhal Anath C Lionel Xiao-Qing Liu Catherine Lord Linda Lotspeich Sabata C Lund Elena Maestrini William Mahoney Carine Mantoulan Christian R Marshall Helen McConachie Christopher J McDougle Jane McGrath William M McMahon Alison Merikangas Ohsuke Migita Nancy J Minshew Ghazala K Mirza Jeff Munson Stanley F Nelson Carolyn Noakes Abdul Noor Gudrun Nygren Guiomar Oliveira Katerina Papanikolaou Jeremy R Parr Barbara Parrini Tara Paton Andrew Pickles Marion Pilorge Joseph Piven Chris P Ponting David J Posey Annemarie Poustka Fritz Poustka Aparna Prasad Jiannis Ragoussis Katy Renshaw Jessica Rickaby Wendy Roberts Kathryn Roeder Bernadette Roge Michael L Rutter Laura J Bierut John P Rice Jeff Salt Katherine Sansom Daisuke Sato Ricardo Segurado Ana F Sequeira Lili Senman Naisha Shah Val C Sheffield Latha Soorya Inês Sousa Olaf Stein Nuala Sykes Vera Stoppioni Christina Strawbridge Raffaella Tancredi Katherine Tansey Bhooma Thiruvahindrapduram Ann P Thompson Susanne Thomson Ana Tryfon John Tsiantis Herman Van Engeland John B Vincent Fred Volkmar Simon Wallace Kai Wang Zhouzhi Wang Thomas H Wassink Caleb Webber Rosanna Weksberg Kirsty Wing Kerstin Wittemeyer Shawn Wood Jing Wu Brian L Yaspan Danielle Zurawiecki Lonnie Zwaigenbaum Joseph D Buxbaum Rita M Cantor Edwin H Cook Hilary Coon Michael L Cuccaro Bernie Devlin Sean Ennis Louise Gallagher Daniel H Geschwind Michael Gill Jonathan L Haines Joachim Hallmayer Judith Miller Anthony P Monaco John I Nurnberger Andrew D Paterson Margaret A Pericak-Vance Gerard D Schellenberg Peter Szatmari Astrid M Vicente Veronica J Vieland Ellen M Wijsman Stephen W Scherer James S Sutcliffe Catalina Betancur

Nature 2010 Jul 9;466(7304):368-72. Epub 2010 Jun 9.

The Centre for Applied Genomics and Program in Genetics and Genomic Biology, The Hospital for Sick Children, Toronto, Ontario M5G 1L7, Canada.

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July 2010

Screen and clean: a tool for identifying interactions in genome-wide association studies.

Genet Epidemiol 2010 Apr;34(3):275-85

Department of Statistics, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.

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April 2010

Discovering genetic ancestry using spectral graph theory.

Genet Epidemiol 2010 Jan;34(1):51-9

Department of Statistics, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.

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January 2010

A SPECTRAL GRAPH APPROACH TO DISCOVERING GENETIC ANCESTRY.

Ann Appl Stat 2010 ;4(1):179-202

Department of Statistics, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213-3890, USA.

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January 2010

Genome-Wide Significance Levels and Weighted Hypothesis Testing.

Stat Sci 2009 Nov;24(4):398-413

Professor of Statistics, Department of Statistics, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, PA 15213, USA.

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November 2009

Depression and mental health help-seeking behaviors in a predominantly African American population of children and adolescents with epilepsy.

Epilepsia 2009 Aug 26;50(8):1943-52. Epub 2009 Feb 26.

Department of Pediatrics, Division of Pediatric Neurology, Children's Hospital of Michigan, Wayne State University, Detroit Medical Center, Detroit, Michigan 48201, USA.

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August 2009

Searching for disease susceptibility variants in structured populations.

Genomics 2009 Jan 2;93(1):1-4. Epub 2008 Jun 2.

Department of Statistics, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, PA 15213-3890, USA.

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January 2009

HIGH DIMENSIONAL VARIABLE SELECTION.

Ann Stat 2009 Jan;37(5A):2178-2201

Department of Statistics, Carnegie Mellon University, Pittsburgh, E-mail: ,

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January 2009

Pleiotropy and principal components of heritability combine to increase power for association analysis.

Genet Epidemiol 2008 Jan;32(1):9-19

Department of Psychiatry, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.

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January 2008

Improving power in genome-wide association studies: weights tip the scale.

Genet Epidemiol 2007 Nov;31(7):741-7

Department of Statistics, Carnegie Mellon University, Pittsburgh, PA 15213, USA.

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November 2007

Genetic liability to schizophrenia in Oceanic Palau: a search in the affected and maternal generation.

Hum Genet 2007 Jul 14;121(6):675-84. Epub 2007 Apr 14.

Department of Psychiatry, University of Pittsburgh School of Medicine, 3811 O'Hara Street, Pittsburgh, PA 15213, USA.

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July 2007

Using linkage genome scans to improve power of association in genome scans.

Am J Hum Genet 2006 Feb 3;78(2):243-52. Epub 2006 Jan 3.

Department of Statistics, Carnegie Mellon University, Pittsburgh, PA 15213-3890, USA.

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February 2006

Analysis of single-locus tests to detect gene/disease associations.

Genet Epidemiol 2005 Apr;28(3):207-19

Department of Statistics, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.

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April 2005

Characterization of multilocus linkage disequilibrium.

Genet Epidemiol 2005 Apr;28(3):193-206

Department of Statistics, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.

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April 2005

Genomic Control to the extreme.

Nat Genet 2004 Nov;36(11):1129-30; author reply 1131

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November 2004

Integration of association statistics over genomic regions using Bayesian adaptive regression splines.

Hum Genomics 2003 Nov;1(1):20-9

Department of Statistics, Carnegie Mellon University, Pittsburg, PA 15213, USA.

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November 2003

Analysis of multilocus models of association.

Genet Epidemiol 2003 Jul;25(1):36-47

Department of Psychiatry, University of Pittsburgh, Pennsylvania 15213, USA.

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July 2003

Evolutionary-based association analysis using haplotype data.

Genet Epidemiol 2003 Jul;25(1):48-58

Department of Statistics, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.

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July 2003

On the identification of disease mutations by the analysis of haplotype similarity and goodness of fit.

Am J Hum Genet 2003 Apr 27;72(4):891-902. Epub 2003 Feb 27.

Department of Statistics, Carnegie Mellon University, Pittsburgh, PA 15213, USA.

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April 2003

Mixture models for linkage analysis of affected sibling pairs and covariates.

Genet Epidemiol 2002 Jan;22(1):52-65

Department of Psychiatry, University of Pittsburgh School of Medicine, 3811 O'Hara Street, Pittsburgh, PA 15213, USA.

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January 2002

Association studies for quantitative traits in structured populations.

Genet Epidemiol 2002 Jan;22(1):78-93

Department of Psychiatry, University of Pittsburgh School of Medicine, 3811 O'Hara Street, Pittsburgh, PA 15213, USA.

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January 2002