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Severity: Notice

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Filename: controllers/Author.php

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Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 31601668

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 31556867

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 31513580

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 31470501

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 31364967

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 31234903

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 31141524

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 31107206

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30986243

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30944197

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30770708

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30720421

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30648939

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30615105

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30602517

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30533856

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30508109

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30504848

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30517666

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30458005

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30371343

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30345355

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30320550

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30212648

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30169561

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30127495

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30037568

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 30006589

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29985125

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29959380

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29914372

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29785015

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29773743

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29723841

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29684021

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29618504

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29547094

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29501823

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29340588

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29177090

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29123067

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 29026653

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 28674145

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 28594827

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 28537263

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 28369261

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 28348868

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 28348859

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 28348846

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 28348840

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 28348834

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 28073968

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 28060810

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 28039273

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27917373

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27694821

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27742466

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27726947

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27703135

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27670112

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27657909

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27572446

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27571974

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27483136

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27467248

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27406977

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27331909

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27246235

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27230264

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 27196580

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 26974227

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 26923111

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 26855083

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 28348825

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 26679588

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 26438500

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 26416779

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 26337895

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 26336060

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 26100894

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 26099265

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 26023211

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 25961941

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 25870761

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 25865368

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 25861820

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 25767221

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 25736880

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 25468903

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 25433005

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 25422674

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

File: /var/www/html/application/controllers/Author.php
Line: 336
Function: pubMedAuthorSearch_array

File: /var/www/html/index.php
Line: 322
Function: require_once

A PHP Error was encountered

Severity: Notice

Message: Undefined offset: 25315365

Filename: controllers/Author.php

Line Number: 1528

Backtrace:

File: /var/www/html/application/controllers/Author.php
Line: 1528
Function: _error_handler

File: /var/www/html/application/controllers/Author.php
Line: 1306
Function: pubMedSearchtoAuthorResults_array

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Publications Authored by Kathryn E Holt | PubFacts
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Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia.

Clin Infect Dis 2019 Oct;69(9):1535-1544

Microbiological Diagnostic Unit Public Health Laboratory, Department of Microbiology and Immunology, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne.

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http://dx.doi.org/10.1093/cid/ciz005DOI Listing
October 2019

Complete Genome Sequence of A388, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 1 Isolate from Greece.

Microbiol Resour Announc 2019 Oct 10;8(41). Epub 2019 Oct 10.

School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, Australia

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http://dx.doi.org/10.1128/MRA.00971-19DOI Listing
October 2019

Systems biology and big data in asthma and allergy - recent discoveries and emerging challenges.

Eur Respir J 2019 Oct 16. Epub 2019 Oct 16.

Cambridge Baker Systems Genomics Initiative, Baker Heart and Diabetes Institute, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1183/13993003.00844-2019DOI Listing
October 2019

Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers.

PLoS Negl Trop Dis 2019 Sep 12;13(9):e0007620. Epub 2019 Sep 12.

Gastrointestinal Bacteria Reference Unit, Bacteriology Reference Department, National Infection Service, Public Health England, London, United Kingdom.

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http://dx.doi.org/10.1371/journal.pntd.0007620DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6741848PMC
September 2019

Insights from the revised complete genome sequences of strains AB307-0294 and ACICU belonging to global clones 1 and 2.

Microb Genom 2019 Sep 26. Epub 2019 Sep 26.

School of Life and Environmental Sciences, University of Sydney, Sydney, Australia.

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http://dx.doi.org/10.1099/mgen.0.000298DOI Listing
September 2019

Z/I1 Hybrid Virulence Plasmids Carrying Antimicrobial Resistance genes in Typhimurium from Australian Food Animal Production.

Microorganisms 2019 Aug 29;7(9). Epub 2019 Aug 29.

Asia Pacific Centre for Animal Health, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Parkville, VIC 3052, Australia.

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http://dx.doi.org/10.3390/microorganisms7090299DOI Listing
August 2019

Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198.

Microb Genom 2019 Jul 20;5(7). Epub 2019 May 20.

3 Unité des Bactéries Pathogènes Entériques, Centre National de Référence des Escherichia coli, Shigella et Salmonella , World Health Organization Collaborative Centre for the Typing and Antibiotic Resistance of Salmonella , Institut Pasteur, 75015 Paris, France.

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http://dx.doi.org/10.1099/mgen.0.000269DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6700661PMC
July 2019

hicap: Serotyping of the Haemophilus influenzae Capsule Locus.

J Clin Microbiol 2019 Jun 24;57(6). Epub 2019 May 24.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1128/JCM.00190-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6535587PMC
June 2019

Performance of neural network basecalling tools for Oxford Nanopore sequencing.

Genome Biol 2019 06 24;20(1):129. Epub 2019 Jun 24.

Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, 3004, Australia.

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http://dx.doi.org/10.1186/s13059-019-1727-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6591954PMC
June 2019

Convergence of virulence and MDR in a single plasmid vector in MDR Klebsiella pneumoniae ST15.

J Antimicrob Chemother 2019 May;74(5):1218-1222

Department of Medical Microbiology, Stavanger University Hospital, Stavanger, Norway.

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http://dx.doi.org/10.1093/jac/dkz028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6477991PMC
May 2019

Empirical ways to identify novel Bedaquiline resistance mutations in AtpE.

PLoS One 2019 29;14(5):e0217169. Epub 2019 May 29.

Department of Biochemistry and Molecular Biology, University of Melbourne, Melbourne, Victoria, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0217169PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6541270PMC
May 2019

FastSpar: rapid and scalable correlation estimation for compositional data.

Bioinformatics 2019 Mar;35(6):1064-1066

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, Australia.

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http://dx.doi.org/10.1093/bioinformatics/bty734DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6419895PMC
March 2019

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307.

J Antimicrob Chemother 2019 Mar;74(3):577-581

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, Australia.

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http://dx.doi.org/10.1093/jac/dky492DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6376852PMC
March 2019

Comment on: CG258 Klebsiella pneumoniae isolates without β-lactam resistance at the onset of the carbapenem-resistant Enterobacteriaceae epidemic in New York City.

J Antimicrob Chemother 2019 Mar;74(3):831-833

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, Australia.

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http://dx.doi.org/10.1093/jac/dky472DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6376848PMC
March 2019

Small IncQ1 and Col-Like Plasmids Harboring and Non-Tn Elements (NTE-IId) in High-Risk Lineages of CG258.

Antimicrob Agents Chemother 2019 03 26;63(3). Epub 2019 Feb 26.

Department of Clinical Analysis, School of Pharmacy, Universidade de São Paulo, São Paulo, Brazil

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http://dx.doi.org/10.1128/AAC.02140-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6395902PMC
March 2019

Diversity-Generating Machines: Genetics of Bacterial Sugar-Coating.

Trends Microbiol 2018 12 20;26(12):1008-1021. Epub 2018 Jul 20.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Victoria, Australia; The London School of Hygiene and Tropical Medicine, London, United Kingdom.

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http://dx.doi.org/10.1016/j.tim.2018.06.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6249986PMC
December 2018

Complete Genome Sequence of WM99c, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 2 (GC2) Strain Representing an Australian GC2 Lineage.

Microbiol Resour Announc 2018 Dec 6;7(22). Epub 2018 Dec 6.

School of Life and Environmental Sciences, University of Sydney, Sydney, Australia.

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http://dx.doi.org/10.1128/MRA.01199-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6284088PMC
December 2018

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks.

PLoS Comput Biol 2018 11 20;14(11):e1006583. Epub 2018 Nov 20.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria, Australia.

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http://dx.plos.org/10.1371/journal.pcbi.1006583
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http://dx.doi.org/10.1371/journal.pcbi.1006583DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6245502PMC
November 2018

The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa.

Nat Commun 2018 11 30;9(1):5094. Epub 2018 Nov 30.

The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, 764 Vo Van Kiet, Quant 5, Ho Chi Minh City, Vietnam.

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http://www.nature.com/articles/s41467-018-07370-z
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http://dx.doi.org/10.1038/s41467-018-07370-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6269545PMC
November 2018

Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria.

Curr Opin Microbiol 2018 10 1;45:131-139. Epub 2018 May 1.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, 30 Flemington Rd, Parkville, Victoria 3010, Australia.

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http://dx.doi.org/10.1016/j.mib.2018.04.004DOI Listing
October 2018

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae.

Genome Med 2018 10 29;10(1):77. Epub 2018 Oct 29.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria, 3010, Australia.

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https://genomemedicine.biomedcentral.com/articles/10.1186/s1
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http://dx.doi.org/10.1186/s13073-018-0587-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6205773PMC
October 2018

Dynamics of antimicrobial resistance in intestinal Escherichia coli from children in community settings in South Asia and sub-Saharan Africa.

Nat Microbiol 2018 09 20;3(9):1063-1073. Epub 2018 Aug 20.

Murdoch Children's Research Institute, Royal Children's Hospital, Parkville, Victoria, Australia.

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http://www.nature.com/articles/s41564-018-0217-4
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http://dx.doi.org/10.1038/s41564-018-0217-4DOI Listing
September 2018

Airway Microbiota Dynamics Uncover a Critical Window for Interplay of Pathogenic Bacteria and Allergy in Childhood Respiratory Disease.

Cell Host Microbe 2018 09;24(3):341-352.e5

Cambridge Baker Systems Genomics Initiative, Baker Heart and Diabetes Institute, Melbourne, VIC 3004, Australia; Cambridge Baker Systems Genomics Initiative, Department of Public Health and Primary Care, University of Cambridge, Cambridge CB1 8RN, UK; School of BioSciences, The University of Melbourne, Parkville, VIC 3010, Australia; Telethon Kids Institute, The University of Western Australia, West Perth, WA, Australia; Department of Clinical Pathology, The University of Melbourne, Parkville, VIC 3010, Australia; The Alan Turing Institute, London, UK. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2018.08.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6291254PMC
September 2018

Multidrug-resistant Shigella sonnei carrying the plasmid-mediated mcr-1 gene in China.

Int J Antimicrob Agents 2018 Jul 28;52(1):14-21. Epub 2018 Feb 28.

Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China. Electronic address:

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http://dx.doi.org/10.1016/j.ijantimicag.2018.02.019DOI Listing
July 2018

Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination.

Nat Commun 2018 07 13;9(1):2703. Epub 2018 Jul 13.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria, 3010, Australia.

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http://dx.doi.org/10.1038/s41467-018-05114-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6045662PMC
July 2018

Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes.

J Clin Microbiol 2018 06 25;56(6). Epub 2018 May 25.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1128/JCM.00197-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5971559PMC
June 2018

Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods.

BMC Evol Biol 2018 06 19;18(1):95. Epub 2018 Jun 19.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, 3020, Australia.

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http://dx.doi.org/10.1186/s12862-018-1210-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6006949PMC
June 2018

Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection.

Microb Genom 2018 03 16;4(3). Epub 2018 Mar 16.

1​Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia.

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http://www.microbiologyresearch.org/content/journal/mgen/10.
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http://dx.doi.org/10.1099/mgen.0.000165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5885017PMC
March 2018

Completing bacterial genome assemblies with multiplex MinION sequencing.

Microb Genom 2017 10 14;3(10):e000132. Epub 2017 Sep 14.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville Victoria 3010, Australia.

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http://dx.doi.org/10.1099/mgen.0.000132DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5695209PMC
October 2017

Are Pathotypes Still Relevant in the Era of Whole-Genome Sequencing?

Front Cell Infect Microbiol 2016 18;6:141. Epub 2016 Nov 18.

Department of Microbiology and Immunology, Peter Doherty Institute for Infection and Immunity, The University of Melbourne Parkville, VIC, Australia.

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http://dx.doi.org/10.3389/fcimb.2016.00141DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5114240PMC
September 2017

Comparative genomics of Crohn's disease-associated adherent-invasive .

Gut 2017 08 20;66(8):1382-1389. Epub 2016 Apr 20.

Medical School, Australian National University, Canberra, Australian Capital Territory, Australia.

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http://dx.doi.org/10.1136/gutjnl-2015-311059DOI Listing
August 2017

Corrigendum: serotyping of from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages.

Microb Genom 2017 07 1;3(7):e000109. Epub 2017 Aug 1.

3​Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia.

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http://dx.doi.org/10.1099/mgen.0.000109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5605953PMC
July 2017

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

PLoS Comput Biol 2017 Jun 8;13(6):e1005595. Epub 2017 Jun 8.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1371/journal.pcbi.1005595DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5481147PMC
June 2017

Variants of AbGRI3 carrying the armA gene in extensively antibiotic-resistant Acinetobacter baumannii from Singapore.

J Antimicrob Chemother 2017 04;72(4):1031-1039

School of Life and Environmental Sciences, The University of Sydney, NSW 2006, Australia.

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http://dx.doi.org/10.1093/jac/dkw542DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5400096PMC
April 2017

pCERC3 from a commensal ST95 Escherichia coli: A ColV virulence-multiresistance plasmid carrying a sul3-associated class 1 integron.

Plasmid 2016 Mar-May;84-85:11-9. Epub 2016 Feb 18.

School of Life and Environmental Sciences, The University of Sydney, NSW, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.plasmid.2016.02.002DOI Listing
March 2017

Prediction of antibiotic resistance from antibiotic resistance genes detected in antibiotic-resistant commensal Escherichia coli using PCR or WGS.

J Antimicrob Chemother 2017 03;72(3):700-704

School of Life and Environmental Sciences, The University of Sydney, NSW 2006, Australia.

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http://dx.doi.org/10.1093/jac/dkw511DOI Listing
March 2017

Vitamin D over the first decade and susceptibility to childhood allergy and asthma.

J Allergy Clin Immunol 2017 02 7;139(2):472-481.e9. Epub 2016 Oct 7.

Telethon Kids Institute, University of Western Australia, Perth, Australia; University of Queensland, Brisbane, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.jaci.2016.07.032DOI Listing
February 2017

Klebsiella pneumoniae Population Genomics and Antimicrobial-Resistant Clones.

Trends Microbiol 2016 12 11;24(12):944-956. Epub 2016 Oct 11.

Centre for Systems Genomics, University of Melbourne, Parkville, Victoria 3010, Australia; Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.tim.2016.09.007DOI Listing
December 2016

Identification of capsule synthesis loci from whole genome data.

Microb Genom 2016 12 12;2(12):e000102. Epub 2016 Dec 12.

2​Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Australia.

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http://dx.doi.org/10.1099/mgen.0.000102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5359410PMC
December 2016

Genome-scale rates of evolutionary change in bacteria.

Microb Genom 2016 11 30;2(11):e000094. Epub 2016 Nov 30.

1​Marie Bashir Institute of Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, NSW 2006, Australia.

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http://dx.doi.org/10.1099/mgen.0.000094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320706PMC
November 2016

Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

Nat Microbiol 2016 10 3;1(11):16209. Epub 2016 Oct 3.

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http://dx.doi.org/10.1038/nmicrobiol.2016.209DOI Listing
October 2016

Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate.

J Antimicrob Chemother 2016 08 30;71(8):2314-7. Epub 2016 May 30.

Centre for Systems Genomics, The University of Melbourne, Melbourne, Australia Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, Australia.

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http://dx.doi.org/10.1093/jac/dkw173DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4954929PMC
August 2016

Microbial mercury methylation in Antarctic sea ice.

Nat Microbiol 2016 08 1;1(10):16127. Epub 2016 Aug 1.

School of Earth Sciences, University of Melbourne, Parkville, Victoria 3010, Australia.

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http://dx.doi.org/10.1038/nmicrobiol.2016.127DOI Listing
August 2016

The diversity of surface polysaccharides.

Microb Genom 2016 08 25;2(8):e000073. Epub 2016 Aug 25.

2​The Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1099/mgen.0.000073DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320592PMC
August 2016

A Scalable Permutation Approach Reveals Replication and Preservation Patterns of Network Modules in Large Datasets.

Cell Syst 2016 07;3(1):71-82

Centre for Systems Genomics, The University of Melbourne, Parkville, VIC 3010, Australia; Department of Pathology, The University of Melbourne, Parkville, VIC 3010, Australia; School of BioSciences, The University of Melbourne, Parkville, VIC 3010, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2016.06.012DOI Listing
July 2016

The Molecular and Spatial Epidemiology of Typhoid Fever in Rural Cambodia.

PLoS Negl Trop Dis 2016 06 22;10(6):e0004785. Epub 2016 Jun 22.

The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.

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http://dx.doi.org/10.1371/journal.pntd.0004785DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4917249PMC
June 2016

Cross-validation to select Bayesian hierarchical models in phylogenetics.

BMC Evol Biol 2016 05 26;16(1):115. Epub 2016 May 26.

Marie Bashir Institute of Infectious Diseases and Biosecurity, Charles Perkins Centre, Sydney Medical School, University of Sydney, Sydney, NSW, 2006, Australia.

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http://dx.doi.org/10.1186/s12862-016-0688-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4880944PMC
May 2016

The genomic signatures of Shigella evolution, adaptation and geographical spread.

Nat Rev Microbiol 2016 Apr 29;14(4):235-50. Epub 2016 Feb 29.

The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, 764 Vo Van Kiet, Quan 5, Ho Chi Minh City, Vietnam.

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April 2016

Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

Nat Microbiol 2016 03 21;1:16027. Epub 2016 Mar 21.

Institut Pasteur, Unité des Bactéries Pathogènes Entériques, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1038/nmicrobiol.2016.27DOI Listing
March 2016

Repeated local emergence of carbapenem-resistant in a single hospital ward.

Microb Genom 2016 03 2;2(3):e000050. Epub 2016 Mar 2.

1​Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia.

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http://dx.doi.org/10.1099/mgen.0.000050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320574PMC
March 2016

A small Acinetobacter plasmid carrying the tet39 tetracycline resistance determinant.

J Antimicrob Chemother 2016 Jan 27;71(1):269-71. Epub 2015 Sep 27.

School of Molecular Bioscience, The University of Sydney, NSW 2006, Australia.

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http://dx.doi.org/10.1093/jac/dkv293DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681370PMC
January 2016

Multiple Genetic Mutations Associated with Polymyxin Resistance in Acinetobacter baumannii.

Antimicrob Agents Chemother 2015 Dec 5;59(12):7899-902. Epub 2015 Oct 5.

Yong Loo Lin School of Medicine, National University Health System, Singapore Saw Swee Hock School of Public Health, National University Health System, Singapore

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http://dx.doi.org/10.1128/AAC.01884-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4649193PMC
December 2015

Genome Sequence of Acinetobacter baumannii Strain D36, an Antibiotic-Resistant Isolate from Lineage 2 of Global Clone 1.

Genome Announc 2015 Dec 17;3(6). Epub 2015 Dec 17.

School of Molecular Bioscience, The University of Sydney, Sydney, Australia

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http://dx.doi.org/10.1128/genomeA.01478-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683233PMC
December 2015

Bandage: interactive visualization of de novo genome assemblies.

Bioinformatics 2015 Oct 22;31(20):3350-2. Epub 2015 Jun 22.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne and.

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http://dx.doi.org/10.1093/bioinformatics/btv383DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4595904PMC
October 2015

Genomic resistance island AGI1 carrying a complex class 1 integron in a multiply antibiotic-resistant ST25 Acinetobacter baumannii isolate.

J Antimicrob Chemother 2015 Sep 28;70(9):2519-23. Epub 2015 May 28.

School of Molecular Bioscience, The University of Sydney, NSW 2006, Australia

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http://dx.doi.org/10.1093/jac/dkv137DOI Listing
September 2015

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data.

BMC Genomics 2015 Sep 3;16:667. Epub 2015 Sep 3.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, VIC, 3010, Australia.

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http://dx.doi.org/10.1186/s12864-015-1860-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4558774PMC
September 2015

Draft Genome Sequence of a Clinical Isolate of Serratia marcescens, Strain AH0650_Sm1.

Genome Announc 2015 Sep 3;3(5). Epub 2015 Sep 3.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Victoria, Australia Centre for Systems Genomics, University of Melbourne, Victoria, Australia

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4559744PMC
September 2015

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events.

Nat Genet 2015 Jun 11;47(6):632-9. Epub 2015 May 11.

Wellcome Trust Sanger Institute, Hinxton, UK.

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http://dx.doi.org/10.1038/ng.3281DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4921243PMC
June 2015

The infant nasopharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development.

Cell Host Microbe 2015 May 9;17(5):704-15. Epub 2015 Apr 9.

Medical Systems Biology, Department of Pathology and Department of Microbiology & Immunology, The University of Melbourne, Parkville, VIC 3010, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2015.03.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4433433PMC
May 2015

Carbapenem and amikacin resistance on a large conjugative Acinetobacter baumannii plasmid.

J Antimicrob Chemother 2015 Apr 27;70(4):1259-61. Epub 2014 Nov 27.

School of Molecular Bioscience, The University of Sydney, Sydney, New South Wales, Australia.

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http://dx.doi.org/10.1093/jac/dku486DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4356202PMC
April 2015

A type 2 A/C2 plasmid carrying the aacC4 apramycin resistance gene and the erm(42) erythromycin resistance gene recovered from two Salmonella enterica serovars.

J Antimicrob Chemother 2015 Apr 2;70(4):1021-5. Epub 2014 Dec 2.

School of Molecular Bioscience, The University of Sydney, Sydney, New South Wales, Australia.

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April 2015

Extensive Capsule Locus Variation and Large-Scale Genomic Recombination within the Klebsiella pneumoniae Clonal Group 258.

Genome Biol Evol 2015 Apr 10;7(5):1267-79. Epub 2015 Apr 10.

Department of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Parkville, Victoria, Australia.

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http://dx.doi.org/10.1093/gbe/evv062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4453057PMC
April 2015

A platform for leveraging next generation sequencing for routine microbiology and public health use.

Health Inf Sci Syst 2015 24;3(Suppl 1 HISA Big Data in Biomedicine and Healthcare 2013 Con):S7. Epub 2015 Feb 24.

Department of Biochemistry and Molecular Biology and Bio21 MolecularScience and Biotechnology Institute, The University of Melbourne, Parkville VIC 3010, Victoria, Australia.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383055PMC
April 2015

Insertions in the OCL1 locus of Acinetobacter baumannii lead to shortened lipooligosaccharides.

Res Microbiol 2014 Jul-Aug;165(6):472-5. Epub 2014 May 23.

School of Molecular Bioscience, The University of Sydney, New South Wales, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.resmic.2014.05.034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4110982PMC
March 2015

The complete sequence of Salmonella genomic island SGI2.

J Antimicrob Chemother 2015 Feb 14;70(2):617-9. Epub 2014 Oct 14.

School of Molecular Bioscience, The University of Sydney, NSW 2006, Australia

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http://dx.doi.org/10.1093/jac/dku407DOI Listing
February 2015

The complete sequence of Salmonella genomic island SGI1-K.

J Antimicrob Chemother 2015 Jan 4;70(1):305-6. Epub 2014 Sep 4.

School of Molecular Bioscience, The University of Sydney, Sydney, NSW 2006, Australia

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http://dx.doi.org/10.1093/jac/dku331DOI Listing
January 2015

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs.

Genome Med 2014 20;6(11):90. Epub 2014 Nov 20.

Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010 Australia.

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http://dx.doi.org/10.1186/s13073-014-0090-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4237778PMC
November 2014

A conjugative plasmid carrying the carbapenem resistance gene blaOXA-23 in AbaR4 in an extensively resistant GC1 Acinetobacter baumannii isolate.

J Antimicrob Chemother 2014 Oct 6;69(10):2625-8. Epub 2014 Jun 6.

School of Molecular Bioscience, The University of Sydney, NSW 2006, Australia

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http://dx.doi.org/10.1093/jac/dku188DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4164139PMC
October 2014

Elucidation of pathways driving asthma pathogenesis: development of a systems-level analytic strategy.

Front Immunol 2014 23;5:447. Epub 2014 Sep 23.

Medical Systems Biology, Department of Pathology, The University of Melbourne , Parkville, VIC , Australia ; Telethon Kids Institute, The University of Western Australia , West Perth, WA , Australia ; Medical Systems Biology, Department of Microbiology and Immunology, The University of Melbourne , Parkville, VIC , Australia.

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http://dx.doi.org/10.3389/fimmu.2014.00447DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4172064PMC
October 2014

Analysis of Salmonella enterica serovar Typhimurium variable-number tandem-repeat data for public health investigation based on measured mutation rates and whole-genome sequence comparisons.

J Bacteriol 2014 Aug 23;196(16):3036-44. Epub 2014 Jun 23.

Department of Microbiology and Immunology, University of Melbourne, Parkville, Victoria, Australia Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria, Australia

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http://dx.doi.org/10.1128/JB.01820-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4135637PMC
August 2014