Publications by authors named "Kathleen M Fisch"

28Publications

Single-Cell Transcriptomes Reveal a Complex Cellular Landscape in the Middle Ear and Differential Capacities for Acute Response to Infection.

Front Genet 2020 15;11:358. Epub 2020 Apr 15.

Departments of Surgery/Otolaryngology, UC San Diego School of Medicine, VA Medical Center, La Jolla, CA, United States.

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http://dx.doi.org/10.3389/fgene.2020.00358DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7174727PMC
April 2020

Increased Fibrogenic Gene Expression in Multifidus Muscles of Patients With Chronic Versus Acute Lumbar Spine Pathology.

Spine (Phila Pa 1976) 2020 Feb;45(4):E189-E195

Department of Orthopaedic Surgery, University of California San Diego, La Jolla, CA.

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http://dx.doi.org/10.1097/BRS.0000000000003243DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6994378PMC
February 2020

Integrating Gene and Protein Expression Reveals Perturbed Functional Networks in Alzheimer's Disease.

Cell Rep 2019 07;28(4):1103-1116.e4

Department of Neurosciences, University of California, San Diego, La Jolla, CA, USA; Veterans Affairs San Diego Healthcare System, San Diego, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.06.073DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7503200PMC
July 2019

Mechanisms of vascular permeability and remodeling associated with hemarthrosis in factor VIII-deficient mice.

J Thromb Haemost 2019 11 9;17(11):1815-1826. Epub 2019 Aug 9.

Division of Hematology/Oncology, Department of Medicine, University of California San Diego, La Jolla, CA.

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http://dx.doi.org/10.1111/jth.14567DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6824926PMC
November 2019

A Multiscale Map of the Stem Cell State in Pancreatic Adenocarcinoma.

Cell 2019 04 4;177(3):572-586.e22. Epub 2019 Apr 4.

Department of Pharmacology, University of California, San Diego School of Medicine, La Jolla, CA, USA; Sanford Consortium for Regenerative Medicine, La Jolla, CA, USA; Moores Cancer Center, University of California, San Diego School of Medicine, La Jolla, CA, USA; Department of Medicine, University of California, San Diego School of Medicine, La Jolla, CA, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674193027
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http://dx.doi.org/10.1016/j.cell.2019.03.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711371PMC
April 2019

Biological Interpretation of Complex Genomic Data.

Authors:
Kathleen M Fisch

Methods Mol Biol 2019 ;1908:61-71

Department of Medicine, Center for Computational Biology and Bioinformatics, University of California San Diego, La Jolla, CA, USA.

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http://dx.doi.org/10.1007/978-1-4939-9004-7_5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7269365PMC
June 2019

Efficient population-scale variant analysis and prioritization with VAPr.

Bioinformatics 2018 08;34(16):2843-2845

Center for Computational Biology and Bioinformatics, Department of Medicine, University of California, San Diego, La Jolla, CA, USA.

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http://dx.doi.org/10.1093/bioinformatics/bty192DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6084604PMC
August 2018

Heterogeneous muscle gene expression patterns in patients with massive rotator cuff tears.

PLoS One 2018 2;13(1):e0190439. Epub 2018 Jan 2.

Department of Orthopedic Surgery, University of California San Diego, La Jolla, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0190439PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5749784PMC
February 2018

Interactive network visualization in Jupyter notebooks: visJS2jupyter.

Bioinformatics 2018 01;34(1):126-128

Department of Medicine, Center for Computational Biology and Bioinformatics, University of California San Diego, La Jolla, CA 92093, USA.

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http://dx.doi.org/10.1093/bioinformatics/btx581DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6075087PMC
January 2018

Id3 Orchestrates Germinal Center B Cell Development.

Mol Cell Biol 2016 10 26;36(20):2543-52. Epub 2016 Sep 26.

Department of Molecular Biology, University of California, San Diego, La Jolla, California, USA

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http://dx.doi.org/10.1128/MCB.00150-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5038142PMC
October 2016

OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing.

BMC Med Genomics 2015 May 21;8:24. Epub 2015 May 21.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, 92037, CA, USA.

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http://dx.doi.org/10.1186/s12920-015-0095-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4494802PMC
May 2015

Omics Pipe: a community-based framework for reproducible multi-omics data analysis.

Bioinformatics 2015 Jun 30;31(11):1724-8. Epub 2015 Jan 30.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA and Department of Human Biology, J. Craig Venter Institute, 4120 Capricorn Lane, La Jolla, CA 92037, USA.

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http://bioinformatics.oxfordjournals.org/content/early/2015/
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http://bioinformatics.oxfordjournals.org/content/early/2015/
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http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
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http://dx.doi.org/10.1093/bioinformatics/btv061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4443682PMC
June 2015

Oxidative stress diverts tRNA synthetase to nucleus for protection against DNA damage.

Mol Cell 2014 Oct 2;56(2):323-332. Epub 2014 Oct 2.

Departments of Chemical Physiology and Cell and Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10972765140071
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http://dx.doi.org/10.1016/j.molcel.2014.09.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4224670PMC
October 2014

Evaluating the performance of captive breeding techniques for conservation hatcheries: a case study of the delta smelt captive breeding program.

J Hered 2013 Jan-Feb;104(1):92-104. Epub 2012 Nov 1.

Collections Department of San Diego Zoo Global, PO Box 120551, San Diego, CA 92112, USA.

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http://dx.doi.org/10.1093/jhered/ess084DOI Listing
June 2013

Characterization of 24 microsatellite loci in delta smelt, Hypomesus transpacificus, and their cross-species amplification in two other smelt species of the Osmeridae family.

Mol Ecol Resour 2009 Jan;9(1):405-8

Department of Animal Science, University of California - Davis, 1 Shields Avenue, Davis, CA 95616, USA.

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http://dx.doi.org/10.1111/j.1755-0998.2008.02254.xDOI Listing
January 2009