Publications by authors named "Karsten Schnatbaum"

16Publications

Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing.

Authors:
Jana Zecha Chien-Yun Lee Florian P Bayer Chen Meng Vincent Grass Johannes Zerweck Karsten Schnatbaum Thomas Michler Andreas Pichlmair Christina Ludwig Bernhard Kuster

Mol Cell Proteomics 2020 09 26;19(9):1503-1522. Epub 2020 Jun 26.

Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany

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September 2020

New Approaches for Absolute Quantification of Stable-Isotope-Labeled Peptide Standards for Targeted Proteomics Based on a UV Active Tag.

Authors:
Karsten Schnatbaum Victor Solis-Mezarino Daniil Pokrovsky Frederike Schäfer Dennis Nagl Lars Hornberger Johannes Zerweck Tobias Knaute Julia Avramova-Nehmer Mike Schutkowski Veit Hornung Holger Wenschuh Moritz Carl Völker-Albert Axel Imhof Ulf Reimer

Proteomics 2020 05 20;20(10):e2000007. Epub 2020 May 20.

JPT Peptide Technologies GmbH, Volmerstrasse 5, Berlin, 12489, Germany.

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May 2020

Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning.

Authors:
Siegfried Gessulat Tobias Schmidt Daniel Paul Zolg Patroklos Samaras Karsten Schnatbaum Johannes Zerweck Tobias Knaute Julia Rechenberger Bernard Delanghe Andreas Huhmer Ulf Reimer Hans-Christian Ehrlich Stephan Aiche Bernhard Kuster Mathias Wilhelm

Nat Methods 2019 06 27;16(6):509-518. Epub 2019 May 27.

Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany.

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June 2019

A deep proteome and transcriptome abundance atlas of 29 healthy human tissues.

Authors:
Dongxue Wang Basak Eraslan Thomas Wieland Björn Hallström Thomas Hopf Daniel Paul Zolg Jana Zecha Anna Asplund Li-Hua Li Chen Meng Martin Frejno Tobias Schmidt Karsten Schnatbaum Mathias Wilhelm Frederik Ponten Mathias Uhlen Julien Gagneur Hannes Hahne Bernhard Kuster

Mol Syst Biol 2019 02 18;15(2):e8503. Epub 2019 Feb 18.

Chair of Proteomics and Bioanalytics, Technische Universität München, Freising, Germany

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February 2019

ProteomeTools: Systematic Characterization of 21 Post-translational Protein Modifications by Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) Using Synthetic Peptides.

Authors:
Daniel Paul Zolg Mathias Wilhelm Tobias Schmidt Guillaume Médard Johannes Zerweck Tobias Knaute Holger Wenschuh Ulf Reimer Karsten Schnatbaum Bernhard Kuster

Mol Cell Proteomics 2018 09 29;17(9):1850-1863. Epub 2018 May 29.

From the ‡Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany;

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September 2018

Mining the Human Tissue Proteome for Protein Citrullination.

Authors:
Chien-Yun Lee Dongxue Wang Mathias Wilhelm Daniel P Zolg Tobias Schmidt Karsten Schnatbaum Ulf Reimer Fredrik Pontén Mathias Uhlén Hannes Hahne Bernhard Kuster

Mol Cell Proteomics 2018 07 2;17(7):1378-1391. Epub 2018 Apr 2.

From the ‡Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany;

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July 2018

PROCAL: A Set of 40 Peptide Standards for Retention Time Indexing, Column Performance Monitoring, and Collision Energy Calibration.

Authors:
Daniel Paul Zolg Mathias Wilhelm Peng Yu Tobias Knaute Johannes Zerweck Holger Wenschuh Ulf Reimer Karsten Schnatbaum Bernhard Kuster

Proteomics 2017 Nov 24;17(21). Epub 2017 Oct 24.

Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany.

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November 2017

Building ProteomeTools based on a complete synthetic human proteome.

Authors:
Daniel P Zolg Mathias Wilhelm Karsten Schnatbaum Johannes Zerweck Tobias Knaute Bernard Delanghe Derek J Bailey Siegfried Gessulat Hans-Christian Ehrlich Maximilian Weininger Peng Yu Judith Schlegl Karl Kramer Tobias Schmidt Ulrike Kusebauch Eric W Deutsch Ruedi Aebersold Robert L Moritz Holger Wenschuh Thomas Moehring Stephan Aiche Andreas Huhmer Ulf Reimer Bernhard Kuster

Nat Methods 2017 03 30;14(3):259-262. Epub 2017 Jan 30.

Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany.

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March 2017

Mass-spectrometry-based draft of the human proteome.

Authors:
Mathias Wilhelm Judith Schlegl Hannes Hahne Amin Moghaddas Gholami Marcus Lieberenz Mikhail M Savitski Emanuel Ziegler Lars Butzmann Siegfried Gessulat Harald Marx Toby Mathieson Simone Lemeer Karsten Schnatbaum Ulf Reimer Holger Wenschuh Martin Mollenhauer Julia Slotta-Huspenina Joos-Hendrik Boese Marcus Bantscheff Anja Gerstmair Franz Faerber Bernhard Kuster

Nature 2014 May;509(7502):582-7

1] Chair of Proteomics and Bioanalytics, Technische Universität München, Emil-Erlenmeyer Forum 5, 85354 Freising, Germany [2] Center for Integrated Protein Science Munich, Germany.

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May 2014

Peptide microarrays enable rapid mimotope optimization for pharmacokinetic analysis of the novel therapeutic antibody IMAB362.

Authors:
Karsten Schnatbaum Hans-Ulrich Schmoldt Matin Daneschdar Laura M Plum Janina Jansong Johannes Zerweck Yvonne Kühne Antonia Masch Holger Wenschuh Markus Fiedler Özlem Türeci Ugur Sahin Ulf Reimer

Biotechnol J 2014 Apr 7;9(4):545-54. Epub 2014 Mar 7.

JPT Peptide Technologies GmbH, Berlin, Germany.

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April 2014

Novel small molecule bradykinin B1 receptor antagonists. Part 3: hydroxyurea derivatives.

Authors:
Karsten Schnatbaum Marco Schaudt Roland Stragies Jochen R Pfeifer Christoph Gibson Elsa Locardi Dirk Scharn Uwe Richter Holger Kalkhof Klaus Dinkel Gunther Zischinsky

Bioorg Med Chem Lett 2010 Feb 2;20(3):1233-6. Epub 2009 Dec 2.

Jerini AG, Invalidenstrasse 130, 10115 Berlin, Germany.

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February 2010

Novel small molecule bradykinin B1 receptor antagonists. Part 2: 5-membered diaminoheterocycles.

Authors:
Gunther Zischinsky Roland Stragies Marco Schaudt Jochen R Pfeifer Christoph Gibson Elsa Locardi Dirk Scharn Uwe Richter Holger Kalkhof Klaus Dinkel Karsten Schnatbaum

Bioorg Med Chem Lett 2010 Feb 2;20(3):1229-32. Epub 2009 Dec 2.

Jerini AG, Invalidenstrasse 130, 10115 Berlin, Germany.

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February 2010

Novel small molecule bradykinin B1 receptor antagonists. Part 1: benzamides and semicarbazides.

Authors:
Marco Schaudt Elsa Locardi Gunther Zischinsky Roland Stragies Jochen R Pfeifer Christoph Gibson Dirk Scharn Uwe Richter Holger Kalkhof Klaus Dinkel Karsten Schnatbaum

Bioorg Med Chem Lett 2010 Feb 2;20(3):1225-8. Epub 2009 Dec 2.

Jerini AG, Invalidenstrasse 130, 10115 Berlin, Germany.

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February 2010

Novel small molecule bradykinin B2 receptor antagonists.

Authors:
Christoph Gibson Karsten Schnatbaum Jochen R Pfeifer Elsa Locardi Matthias Paschke Ulf Reimer Uwe Richter Dirk Scharn Alexander Faussner Thomas Tradler

J Med Chem 2009 Jul;52(14):4370-9

Department of Medicinal Chemistry, Jerini AG, Berlin D-10115, Germany.

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July 2009

Complement 5a receptor inhibition improves renal allograft survival.

Authors:
Faikah Gueler Song Rong Wilfried Gwinner Michael Mengel Verena Bröcker Sylvia Schön Tim Friedrich Greten Heiko Hawlisch Thomas Polakowski Karsten Schnatbaum Jan Menne Hermann Haller Nelli Shushakova

J Am Soc Nephrol 2008 Dec 27;19(12):2302-12. Epub 2008 Aug 27.

Department of Nephrology, Medical School Hannover, Carl-Neuberg-Strasse 1, 30625 Hannover, Germany.

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December 2008

Peptidomimetic C5a receptor antagonists with hydrophobic substitutions at the C-terminus: increased receptor specificity and in vivo activity.

Authors:
Karsten Schnatbaum Elsa Locardi Dirk Scharn Uwe Richter Heiko Hawlisch Jochen Knolle Thomas Polakowski

Bioorg Med Chem Lett 2006 Oct 28;16(19):5088-92. Epub 2006 Jul 28.

Jerini AG, Invalidenstrasse 130, 10115 Berlin, Germany.

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October 2006