Karin Oien

Karin Oien

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Karin Oien

Karin Oien

Publications by authors named "Karin Oien"

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Artificial intelligence in digital pathology: a roadmap to routine use in clinical practice.

J Pathol 2019 Oct 18;249(2):143-150. Epub 2019 Jul 18.

PathLAKE (Principal Investigator), Nuffield Department of Surgical Sciences and Oxford NIHR Biomedical Research Centre, University of Oxford, John Radcliffe Hospital, Oxford, UK.

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http://dx.doi.org/10.1002/path.5310DOI Listing
October 2019

Survey of UK histopathology consultants' attitudes towards academic and molecular pathology.

J Clin Pathol 2019 Jun 25;72(6):399-405. Epub 2019 Mar 25.

Academic Unit of Oral and Maxillofacial Medicine, Pathology and Surgery, University of Sheffield, Sheffield, UK.

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http://dx.doi.org/10.1136/jclinpath-2018-205568DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6580784PMC
June 2019

Pathology and regulation for research in the UK: an overview.

F1000Res 2019 27;8:975. Epub 2019 Jun 27.

Nuffield Department of Surgical Sciences, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.12688/f1000research.19732.2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6694446.2PMC
June 2019

Training and accreditation standards for pathologists undertaking clinical trial work.

J Pathol Clin Res 2019 Apr 27;5(2):100-107. Epub 2019 Feb 27.

Pathology and Data Analytics, Leeds Institute of Medical Research at St. James's, University of Leeds, Leeds, UK.

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http://dx.doi.org/10.1002/cjp2.124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6463859PMC
April 2019

The use of digital pathology and image analysis in clinical trials.

J Pathol Clin Res 2019 Apr 25;5(2):81-90. Epub 2019 Mar 25.

Nuffield Department of Surgical Sciences, University of Oxford, and Oxford NIHR Biomedical Research Centre, Oxford, UK.

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http://doi.wiley.com/10.1002/cjp2.127
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http://dx.doi.org/10.1002/cjp2.127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6463857PMC
April 2019

Time for change: a new training programme for morpho-molecular pathologists?

J Clin Pathol 2018 Apr 7;71(4):285-290. Epub 2017 Nov 7.

Northern Ireland Molecular Pathology Laboratory, Centre for Cancer Research and Cell Biology, Queen's University Belfast, Belfast, UK.

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http://dx.doi.org/10.1136/jclinpath-2017-204821DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5868526PMC
April 2018

Morphomolecular pathology: setting the framework for a new generation of pathologists.

Br J Cancer 2017 11 9;117(11):1581-1582. Epub 2017 Nov 9.

Northern Ireland Molecular Pathology Laboratory, Centre for Cancer Research and Cell Biology, Queen's University Belfast, Belfast BT7 1NN, Northern Ireland.

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http://dx.doi.org/10.1038/bjc.2017.340DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5729440PMC
November 2017

Investigating Various Thresholds as Immunohistochemistry Cutoffs for Observer Agreement.

Appl Immunohistochem Mol Morphol 2017 Oct;25(9):599-608

*Institute of Cancer Sciences, College of Medical, Veterinary and Life Sciences, University of Glasgow §Institute of Cardiovascular and Medical Sciences, University of Glasgow, Western Infirmary ¶Academic Unit of Surgery, School of Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow Royal Infirmary ‡Department of Pathology, Laboratory Medicine Building, Queen Elizabeth University Hospital, Greater Glasgow & Clyde NHS ∥West of Scotland Pancreatic Unit and Glasgow Royal Infirmary, Alexandra Parade, Glasgow #Pathology Laboratory, Forth Valley Royal Hospital, Larbert, UK †Institute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.

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http://dx.doi.org/10.1097/PAI.0000000000000357DOI Listing
October 2017

A33 shows similar sensitivity to but is more specific than CDX2 as an immunomarker of colorectal carcinoma.

Histopathology 2017 Jul 11;71(1):34-41. Epub 2017 Apr 11.

Institute of Cancer Sciences, University of Glasgow, Glasgow, UK.

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http://dx.doi.org/10.1111/his.13194DOI Listing
July 2017

Hypermutation In Pancreatic Cancer.

Gastroenterology 2017 01 15;152(1):68-74.e2. Epub 2016 Nov 15.

Wolfson Wohl Cancer Research Centre, Institute of Cancer Sciences, University of Glasgow, Glasgow, Scotland, United Kingdom; Department of Surgery, Bankstown Hospital, Bankstown, Sydney, New South Wales, Australia; South Western Sydney Clinical School, Faculty of Medicine, University of New South Wales Australia, Liverpool, New South Wales, Australia; West of Scotland Pancreatic Unit, Glasgow Royal Infirmary, Glasgow, United Kingdom. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00165085163518
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http://dx.doi.org/10.1053/j.gastro.2016.09.060DOI Listing
January 2017

Cancers of unknown primary diagnosed during hospitalization: a population-based study.

BMC Cancer 2017 01 31;17(1):85. Epub 2017 Jan 31.

University of Glasgow, 1 Lilybank Gardens, Glasgow, G12 8RZ, UK.

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http://dx.doi.org/10.1186/s12885-017-3083-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5282907PMC
January 2017

Genomic analyses identify molecular subtypes of pancreatic cancer.

Authors:
Peter Bailey David K Chang Katia Nones Amber L Johns Ann-Marie Patch Marie-Claude Gingras David K Miller Angelika N Christ Tim J C Bruxner Michael C Quinn Craig Nourse L Charles Murtaugh Ivon Harliwong Senel Idrisoglu Suzanne Manning Ehsan Nourbakhsh Shivangi Wani Lynn Fink Oliver Holmes Venessa Chin Matthew J Anderson Stephen Kazakoff Conrad Leonard Felicity Newell Nick Waddell Scott Wood Qinying Xu Peter J Wilson Nicole Cloonan Karin S Kassahn Darrin Taylor Kelly Quek Alan Robertson Lorena Pantano Laura Mincarelli Luis N Sanchez Lisa Evers Jianmin Wu Mark Pinese Mark J Cowley Marc D Jones Emily K Colvin Adnan M Nagrial Emily S Humphrey Lorraine A Chantrill Amanda Mawson Jeremy Humphris Angela Chou Marina Pajic Christopher J Scarlett Andreia V Pinho Marc Giry-Laterriere Ilse Rooman Jaswinder S Samra James G Kench Jessica A Lovell Neil D Merrett Christopher W Toon Krishna Epari Nam Q Nguyen Andrew Barbour Nikolajs Zeps Kim Moran-Jones Nigel B Jamieson Janet S Graham Fraser Duthie Karin Oien Jane Hair Robert Grützmann Anirban Maitra Christine A Iacobuzio-Donahue Christopher L Wolfgang Richard A Morgan Rita T Lawlor Vincenzo Corbo Claudio Bassi Borislav Rusev Paola Capelli Roberto Salvia Giampaolo Tortora Debabrata Mukhopadhyay Gloria M Petersen Donna M Munzy William E Fisher Saadia A Karim James R Eshleman Ralph H Hruban Christian Pilarsky Jennifer P Morton Owen J Sansom Aldo Scarpa Elizabeth A Musgrove Ulla-Maja Hagbo Bailey Oliver Hofmann Robert L Sutherland David A Wheeler Anthony J Gill Richard A Gibbs John V Pearson Nicola Waddell Andrew V Biankin Sean M Grimmond

Nature 2016 Mar 24;531(7592):47-52. Epub 2016 Feb 24.

Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia.

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http://dx.doi.org/10.1038/nature16965DOI Listing
March 2016

Prevalent low-grade dysplasia: the strongest predictor of malignant progression in Barrett's columnar-lined oesophagus.

Gut 2016 Feb 17;65(2):360-1. Epub 2015 Jun 17.

Department of Pathology, South Glasgow University Hospital, Glasgow, UK Institute of Cancer Sciences, University of Glasgow, Glasgow, UK.

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http://dx.doi.org/10.1136/gutjnl-2015-309978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4752652PMC
February 2016

Cytomegalovirus pouchitis in a patient with Crohn's disease.

BMJ Case Rep 2014 Jul 17;2014. Epub 2014 Jul 17.

NHS Greater Glasgow and Clyde, Glasgow, UK.

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http://dx.doi.org/10.1136/bcr-2014-205374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4112339PMC
July 2014

Expression of KOC, S100P, mesothelin and MUC1 in pancreatico-biliary adenocarcinomas: development and utility of a potential diagnostic immunohistochemistry panel.

BMC Clin Pathol 2014 23;14:35. Epub 2014 Jul 23.

Wolfson Wohl Cancer Research Centre, Institute of Cancer Sciences, College of Medical Veterinary and Life Sciences, University of Glasgow, Garscube Estate, Switchback Road, Bearsden G61 1QH, UK ; Department of Pathology, Southern General Hospital, Greater Glasgow & Clyde NHS, Glasgow G51 4TF, UK.

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http://bmcclinpathol.biomedcentral.com/articles/10.1186/1472
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http://dx.doi.org/10.1186/1472-6890-14-35DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4112611PMC
July 2014

Descriptive epidemiology of cancer of unknown primary site in Scotland, 1961-2010.

Cancer Epidemiol 2014 Jun 13;38(3):227-34. Epub 2014 Apr 13.

Wolfson Wohl Cancer Research Centre, College of Medical, Veterinary & Life Sciences, Institute of Cancer Sciences, University of Glasgow, Garscube Estate, Glasgow G61 1QH, United Kingdom.

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http://dx.doi.org/10.1016/j.canep.2014.03.010DOI Listing
June 2014

Activation of the IL-6R/Jak/stat pathway is associated with a poor outcome in resected pancreatic ductal adenocarcinoma.

J Gastrointest Surg 2013 May 23;17(5):887-98. Epub 2013 Feb 23.

West of Scotland Pancreatic Unit, Glasgow Royal Infirmary, Glasgow, G31 2ER, UK.

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http://dx.doi.org/10.1007/s11605-013-2168-7DOI Listing
May 2013

Improvement of parenteral nutrition-associated cholestasis in an adult using fish oil-based parenteral nutrition.

Frontline Gastroenterol 2012 Apr 13;3(2):94-97. Epub 2012 Mar 13.

Department of Gastroenterology, Glasgow Royal Infirmary, Glasgow, UK.

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http://dx.doi.org/10.1136/flgastro-2011-100056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5517263PMC
April 2012

MicroRNA molecular profiles associated with diagnosis, clinicopathologic criteria, and overall survival in patients with resectable pancreatic ductal adenocarcinoma.

Clin Cancer Res 2012 Jan 23;18(2):534-45. Epub 2011 Nov 23.

West of Scotland Pancreatic Unit, Glasgow Royal Infirmary, Alexandra Parade, Glasgow, G31 2ER, United Kingdom.

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http://dx.doi.org/10.1158/1078-0432.CCR-11-0679DOI Listing
January 2012

Clinical potential of microRNAs in pancreatic ductal adenocarcinoma.

Pancreas 2011 Nov;40(8):1165-71

Beatson Institute for Cancer Research, Glasgow, UK.

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http://dx.doi.org/10.1097/MPA.0b013e3182218ffbDOI Listing
November 2011

Tissue biomarkers for prognosis in pancreatic ductal adenocarcinoma: a systematic review and meta-analysis.

Clin Cancer Res 2011 May 28;17(10):3316-31. Epub 2011 Mar 28.

West of Scotland Pancreatic Unit and Department of Pathology, Glasgow Royal Infirmary, Alexandra Parade, Glasgow, United Kingdom.

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http://clincancerres.aacrjournals.org/content/early/2011/03/
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http://clincancerres.aacrjournals.org/cgi/doi/10.1158/1078-0
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http://dx.doi.org/10.1158/1078-0432.CCR-10-3284DOI Listing
May 2011

Adjuvant chemotherapy for resected colon cancer: comparison of the prognostic value of tumour and patient related factors.

Int J Colorectal Dis 2011 Apr 7;26(4):483-92. Epub 2011 Jan 7.

University Department of Surgery, Glasgow Royal Infirmary, Glasgow G31 2ER, UK.

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http://dx.doi.org/10.1007/s00384-010-1120-5DOI Listing
April 2011

Peripancreatic fat invasion is an independent predictor of poor outcome following pancreaticoduodenectomy for pancreatic ductal adenocarcinoma.

J Gastrointest Surg 2011 Mar 30;15(3):512-24. Epub 2010 Nov 30.

West of Scotland Pancreatic Unit, Glasgow Royal Infirmary, Alexandra Parade, Glasgow G31 2ER, UK.

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http://link.springer.com/10.1007/s11605-010-1395-4
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http://dx.doi.org/10.1007/s11605-010-1395-4DOI Listing
March 2011

Nodular regenerative hyperplasia of the liver: survival and associated features in a UK case series.

Eur J Gastroenterol Hepatol 2010 Aug;22(8):1001-5

Department of Gastroenterology, Southern General Hospital, 1345 Govan Road, Glasgow G51 4TF, UK.

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http://dx.doi.org/10.1097/MEG.0b013e3283360021DOI Listing
August 2010

Positive mobilization margins alone do not influence survival following pancreatico-duodenectomy for pancreatic ductal adenocarcinoma.

Ann Surg 2010 Jun;251(6):1003-10

West of Scotland Pancreatic Unit, Department of Pancreatico-Biliary Surgery, Glasgow Royal Infirmary, Alexandra Parade, Glasgow, United Kingdom.

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https://insights.ovid.com/crossref?an=00000658-201006000-000
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http://dx.doi.org/10.1097/SLA.0b013e3181d77369DOI Listing
June 2010

The relationship between the local and systemic inflammatory responses and survival in patients undergoing curative surgery for colon and rectal cancers.

J Gastrointest Surg 2009 Nov 19;13(11):2011-8; discussion 2018-9. Epub 2009 Sep 19.

University Department of Surgery, Faculty of Medicine, University of Glasgow Royal Infirmary, Glasgow, UK.

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http://dx.doi.org/10.1007/s11605-009-1034-0DOI Listing
November 2009

Tumour inflammatory infiltrate predicts survival following curative resection for node-negative colorectal cancer.

Eur J Cancer 2009 Aug 4;45(12):2138-45. Epub 2009 May 4.

University Department of Surgery, Division of Cancer Sciences and Molecular Pathology, Faculty of Medicine, University of Glasgow, Glasgow Royal Infirmary, Glasgow G31 2ER, UK.

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http://dx.doi.org/10.1016/j.ejca.2009.04.011DOI Listing
August 2009

Pathway analysis of senescence-associated miRNA targets reveals common processes to different senescence induction mechanisms.

Biochim Biophys Acta 2009 Apr 12;1792(4):341-52. Epub 2009 Feb 12.

University of Glasgow, Cancer Research UK Beatson Laboratories, Bearsden, Glasgow G61 1BD, UK.

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http://dx.doi.org/10.1016/j.bbadis.2009.02.003DOI Listing
April 2009

Pathologic evaluation of unknown primary cancer.

Authors:
Karin A Oien

Semin Oncol 2009 Feb;36(1):8-37

Division of Cancer Sciences and Molecular Pathology, Faculty of Medicine, University of Glasgow, United Kingdom.

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http://dx.doi.org/10.1053/j.seminoncol.2008.10.009DOI Listing
February 2009

Raising the profile of cancer of unknown primary.

J Clin Oncol 2008 Sep;26(27):4373-5

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http://dx.doi.org/10.1200/JCO.2008.17.6156DOI Listing
September 2008

Reduction of Raf-1 kinase inhibitor protein expression correlates with breast cancer metastasis.

Clin Cancer Res 2005 Oct;11(20):7392-7

Beatson Institute for Cancer Research, Signaling and Proteomics Laboratory, Glasgow, UK.

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http://dx.doi.org/10.1158/1078-0432.CCR-05-0283DOI Listing
October 2005

Demethylation of the MCJ gene in stage III/IV epithelial ovarian cancer and response to chemotherapy.

Gynecol Oncol 2005 Jun;97(3):898-903

Centre for Oncology and Applied Pharmacology, Cancer Research UK Beatson Laboratories, Glasgow University, Glasgow G61 1BD, UK.

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http://dx.doi.org/10.1016/j.ygyno.2005.03.023DOI Listing
June 2005

Markers of adenocarcinoma characteristic of the site of origin: development of a diagnostic algorithm.

Clin Cancer Res 2005 May;11(10):3766-72

Cancer Research UK Centre for Oncology and Applied Pharmacology, Beatson Laboratories, University of Glasgow, Garscube Estate, Switchback Road, Glasgow G61 1BD, United Kingdom.

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http://dx.doi.org/10.1158/1078-0432.CCR-04-2236DOI Listing
May 2005

Bleeding gastric varices and antiphospholipid syndrome.

Nat Clin Pract Gastroenterol Hepatol 2005 Mar;2(3):156-9; quiz 1 p following 159

Department of Gastroenterology, Glasgow Royal Infirmary, UK.

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http://dx.doi.org/10.1038/ncpgasthep0110DOI Listing
March 2005

Hunting the primary: novel strategies for defining the origin of tumours.

J Pathol 2005 Jan;205(2):236-47

Department of Cancer Medicine, Imperial College of Science, Technology and Medicine at Hammersmith Hospital, London, UK.

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http://dx.doi.org/10.1002/path.1702DOI Listing
January 2005

Duodenal vasculitis.

Gastrointest Endosc 2004 Oct;60(4):602-3

Department of Gastroenterology, Glasgow Royal Infirmary, Scotland, United Kingdom.

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http://dx.doi.org/10.1016/s0016-5107(04)01876-0DOI Listing
October 2004

Gastrokine 1 is abundantly and specifically expressed in superficial gastric epithelium, down-regulated in gastric carcinoma, and shows high evolutionary conservation.

J Pathol 2004 Jul;203(3):789-97

Cancer Research UK Department of Medical Oncology, Cancer Research UK Beatson Laboratories, University of Glasgow, Garscube Estate, Switchback Road, Glasgow, G61 1BD, UK.

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http://dx.doi.org/10.1002/path.1583DOI Listing
July 2004

Serial analysis of gene expression.

Authors:
Karin A Oien

Methods Mol Biol 2003 ;226:271-84

CRC Department of Medical Oncology, University of Glasgow, UK.

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http://dx.doi.org/10.1385/1-59259-384-4:271DOI Listing
November 2003

Profiling, comparison and validation of gene expression in gastric carcinoma and normal stomach.

Oncogene 2003 Jul;22(27):4287-300

Cancer Research UK, Department of Medical Oncology, Cancer Research UK Beatson Laboratories, University of Glasgow, Garscube Estate, Switchback Road, Glasgow G61 1BD, UK.

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http://dx.doi.org/10.1038/sj.onc.1206615DOI Listing
July 2003

Identification from public data of molecular markers of adenocarcinoma characteristic of the site of origin.

Cancer Res 2002 Nov;62(21):5999-6005

Cancer Research UK Department of Medical Oncology, University of Glasgow, Cancer Research UK Beatson Laboratories, Scotland, United Kingdom.

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November 2002