Publications by authors named "Karel Bezstarosti"

47Publications

Detection of Protein Ubiquitination Sites by Peptide Enrichment and Mass Spectrometry.

J Vis Exp 2020 03 23(157). Epub 2020 Mar 23.

Proteomics Center, Erasmus University Medical Center;

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http://dx.doi.org/10.3791/59079DOI Listing
March 2020

Recovery in the Myogenic Program of Congenital Myotonic Dystrophy Myoblasts after Excision of the Expanded (CTG) Repeat.

Int J Mol Sci 2019 Nov 13;20(22). Epub 2019 Nov 13.

Department of Cell Biology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands.

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http://dx.doi.org/10.3390/ijms20225685DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6888582PMC
November 2019

Global Proteome and Ubiquitinome Changes in the Soluble and Insoluble Fractions of Q175 Huntington Mice Brains.

Mol Cell Proteomics 2019 09 28;18(9):1705-1720. Epub 2019 May 28.

‡Department of Medical Biology, Amsterdam UMC, location AMC, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands

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http://dx.doi.org/10.1074/mcp.RA119.001486DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6731087PMC
September 2019

Improvement of ubiquitylation site detection by Orbitrap mass spectrometry.

J Proteomics 2018 02 6;172:49-56. Epub 2017 Nov 6.

Proteomics Center, Erasmus University Medical Center, Wytemaweg 80, 3015 CN Rotterdam, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2017.10.014DOI Listing
February 2018

Quantitative Proteomics Reveals Extensive Changes in the Ubiquitinome after Perturbation of the Proteasome by Targeted dsRNA-Mediated Subunit Knockdown in Drosophila.

J Proteome Res 2017 08 11;16(8):2848-2862. Epub 2017 Jul 11.

Proteomics Center, ‡Netherlands Proteomics Center, and §Department of Biochemistry, Erasmus University Medical Center , Wytemaweg 80, 3015 CN Rotterdam, The Netherlands.

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http://dx.doi.org/10.1021/acs.jproteome.7b00156DOI Listing
August 2017

Combgap contributes to recruitment of Polycomb group proteins in Drosophila.

Proc Natl Acad Sci U S A 2016 Apr 21;113(14):3826-31. Epub 2016 Mar 21.

Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892;

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http://dx.doi.org/10.1073/pnas.1520926113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833261PMC
April 2016

A Testis-Specific Chaperone and the Chromatin Remodeler ISWI Mediate Repackaging of the Paternal Genome.

Cell Rep 2015 Nov 5;13(7):1310-1318. Epub 2015 Nov 5.

Department of Biochemistry, Erasmus University Medical Center, P.O. Box 1738, 3000 DR, Rotterdam, the Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.10.010DOI Listing
November 2015

Preconception folic acid use influences the follicle fluid proteome.

Eur J Clin Invest 2015 Aug 3;45(8):833-41. Epub 2015 Jul 3.

Department of Obstetrics and Gynecology, Erasmus MC, University Medical Center, Rotterdam, the Netherlands.

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http://dx.doi.org/10.1111/eci.12478DOI Listing
August 2015

Integrative analysis of genomics and proteomics data on clinical breast cancer tissue specimens extracted with acid guanidinium thiocyanate-phenol-chloroform.

J Proteome Res 2015 Mar 2;14(3):1627-36. Epub 2015 Feb 2.

Department of Medical Oncology, Erasmus MC Cancer Institute, University Medical Center Rotterdam , Be401, P.O. Box 2040, 3000 CA Rotterdam, The Netherlands.

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http://dx.doi.org/10.1021/acs.jproteome.5b00046DOI Listing
March 2015

Global quantitative proteomics reveals novel factors in the ecdysone signaling pathway in Drosophila melanogaster.

Proteomics 2015 Feb 14;15(4):725-38. Epub 2015 Jan 14.

Proteomics Center, Erasmus University Medical Center, Rotterdam, The Netherlands; Netherlands Proteomics Center, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1002/pmic.201400308DOI Listing
February 2015

Histone chaperone NAP1 mediates sister chromatid resolution by counteracting protein phosphatase 2A.

PLoS Genet 2013 26;9(9):e1003719. Epub 2013 Sep 26.

Department of Biochemistry and Centre for Biomedical Genetics, Erasmus University Medical Center, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1371/journal.pgen.1003719DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3784504PMC
March 2014

Subunits of the histone chaperone CAF1 also mediate assembly of protamine-based chromatin.

Cell Rep 2013 Jul 27;4(1):59-65. Epub 2013 Jun 27.

Department of Biochemistry, Erasmus University Medical Centre, P.O. Box 1738, 3000 DR, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.celrep.2013.06.002DOI Listing
July 2013

An immunoaffinity purification method for the proteomic analysis of ubiquitinated protein complexes.

Anal Biochem 2013 Sep 3;440(2):227-36. Epub 2013 Jun 3.

Department of Genetics and Netherlands Proteomics Centre, Centre for Biomedical Genetics, Erasmus University Medical Centre, 3015 GE Rotterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.ab.2013.05.020DOI Listing
September 2013

Proteomic analysis of the microenvironment of developing oocytes.

Proteomics 2012 May;12(9):1463-71

Department of Obstetrics and Gynecology, Erasmus University Medical Center, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1002/pmic.201100240DOI Listing
May 2012

Transcription-independent function of Polycomb group protein PSC in cell cycle control.

Science 2012 May 5;336(6082):744-7. Epub 2012 Apr 5.

Department of Biochemistry and Centre for Biomedical Genetics, Erasmus University Medical Centre, Post Office Box 1738, 3000 DR, Rotterdam, Netherlands.

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http://dx.doi.org/10.1126/science.1215927DOI Listing
May 2012

Unraveling the human bone microenvironment beyond the classical extracellular matrix proteins: a human bone protein library.

J Proteome Res 2011 Oct 21;10(10):4725-33. Epub 2011 Sep 21.

Department of Internal Medicine, Erasmus Medical Centre, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1021/pr200522nDOI Listing
October 2011

Drosophila transcription factor Tramtrack69 binds MEP1 to recruit the chromatin remodeler NuRD.

Mol Cell Biol 2010 Nov 23;30(21):5234-44. Epub 2010 Aug 23.

Department of Biochemistry, Center for Biomedical Genetics, Erasmus University Medical Center, Rotterdam, Netherlands.

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http://dx.doi.org/10.1128/MCB.00266-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2953047PMC
November 2010

Differential proteomics based on 18O labeling to determine the cyclin dependent kinase 9 interactome.

J Proteome Res 2010 Sep;9(9):4464-75

Proteomics Center and Department of Cell Biology, Erasmus University Medical Center, Dr. Molewaterplein 50, 3015 GE Rotterdam, The Netherlands.

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http://dx.doi.org/10.1021/pr100217dDOI Listing
September 2010

An Oct4-centered protein interaction network in embryonic stem cells.

Cell Stem Cell 2010 Apr;6(4):369-81

Department of Cell Biology, Erasmus MC, Dr. Molewaterplein 50, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.stem.2010.02.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2860243PMC
April 2010

Histone chaperones ASF1 and NAP1 differentially modulate removal of active histone marks by LID-RPD3 complexes during NOTCH silencing.

Mol Cell 2009 Sep;35(6):782-93

Department of Biochemistry, Center for Biomedical Genetics, Erasmus University Medical Center, P.O. Box 1738, 3000 DR Rotterdam, The Netherlands.

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http://linkinghub.elsevier.com/retrieve/pii/S109727650900516
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http://dx.doi.org/10.1016/j.molcel.2009.07.020DOI Listing
September 2009

DNA dependent recruitment of DDX17 and other interacting proteins by the human androgen receptor.

Biochim Biophys Acta 2009 Feb 14;1794(2):193-8. Epub 2008 Nov 14.

Department of Reproduction and Development, Erasmus MC, 3000 CA Rotterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.bbapap.2008.11.001DOI Listing
February 2009

dKDM2 couples histone H2A ubiquitylation to histone H3 demethylation during Polycomb group silencing.

Genes Dev 2008 Oct;22(20):2799-810

Department of Biochemistry, Center for Biomedical Genetics, Erasmus University Medical Center, 3000 DR Rotterdam, The Netherlands.

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http://dx.doi.org/10.1101/gad.484208DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2569881PMC
October 2008

Estrogen-related receptor beta interacts with Oct4 to positively regulate Nanog gene expression.

Mol Cell Biol 2008 Oct 28;28(19):5986-95. Epub 2008 Jul 28.

Department of Cell Biology, Erasmus MC, Dr. Molewaterplein 50, 3015GE Rotterdam, The Netherlands.

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http://dx.doi.org/10.1128/MCB.00301-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2547019PMC
October 2008

The transcriptional coactivator SAYP is a trithorax group signature subunit of the PBAP chromatin remodeling complex.

Mol Cell Biol 2008 May 25;28(9):2920-9. Epub 2008 Feb 25.

Department of Biochemistry, Center for Biomedical Genetics, Erasmus University Medical Center, P.O. Box 1738, 3000 DR Rotterdam, The Netherlands.

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http://dx.doi.org/10.1128/MCB.02217-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2293093PMC
May 2008

Deubiquitylating enzyme UBP64 controls cell fate through stabilization of the transcriptional repressor tramtrack.

Mol Cell Biol 2008 Mar 26;28(5):1606-15. Epub 2007 Dec 26.

Department of Biochemistry, Erasmus University Medical Center, P.O. Box 1738, 3000 DR Rotterdam, The Netherlands.

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http://dx.doi.org/10.1128/MCB.01567-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2258761PMC
March 2008

Time dependent changes in cytoplasmic proteins of the right ventricle during prolonged pressure overload.

J Mol Cell Cardiol 2007 Aug 31;43(2):197-209. Epub 2007 May 31.

Erasmus MC-Sophia, Department of Pediatrics, Division of Pediatric Cardiology, Room Sp-2429, Dr. Molewaterplein 60, 3015 GJ, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.yjmcc.2007.05.002DOI Listing
August 2007

Differential proteomic profiling to study the mechanism of cardiac pharmacological preconditioning by resveratrol.

J Cell Mol Med 2006 Oct-Dec;10(4):896-907

Cardiovascular Research Center, University of Connecticut School of Medicine, Farmington, CT 06030-1110, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3933086PMC
http://dx.doi.org/10.1111/j.1582-4934.2006.tb00533.xDOI Listing
January 2007

Dynamic assembly of end-joining complexes requires interaction between Ku70/80 and XRCC4.

Proc Natl Acad Sci U S A 2006 Dec 21;103(49):18597-602. Epub 2006 Nov 21.

Department of Biochemistry, Center for Biomics, Erasmus MC, University Medical Center, 3000 CA Rotterdam, The Netherlands.

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http://dx.doi.org/10.1073/pnas.0609061103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1693708PMC
December 2006

Mitochondrial adaptations within chronically ischemic swine myocardium.

J Mol Cell Cardiol 2006 Dec 22;41(6):980-8. Epub 2006 Aug 22.

Experimental Cardiology, Thoraxcenter, Cardiovascular Research School COEUR, Erasmus MC, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.yjmcc.2006.07.008DOI Listing
December 2006

Recent developments in proteomics: implications for the study of cardiac hypertrophy and failure.

Cell Biochem Biophys 2006 ;44(1):11-29

Department of Pediatrics, Division of Pediatric Cardiology, Cardiovascular Research School COEUR, Erasmus MC, Sophia Children's Hospital, Rotterdam, The Netherlands.

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http://link.springer.com/10.1385/CBB:44:1:011
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http://dx.doi.org/10.1385/CBB:44:1:011DOI Listing
April 2006

Proteomic changes in the pressure overloaded right ventricle after 6 weeks in young rats: correlations with the degree of hypertrophy.

Proteomics 2005 Jul;5(10):2519-30

Department of Pediatrics, Division of Pediatric Cardiology, Erasmus MC-Sophia Children's Hospital, Cardiovascular Research School COEUR, Erasmus University Medical Center, Rotterdam, The Netherlands.

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http://doi.wiley.com/10.1002/pmic.200401313
Publisher Site
http://dx.doi.org/10.1002/pmic.200401313DOI Listing
July 2005