Kanako O Koyanagi

Kanako O Koyanagi

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Kanako O Koyanagi

Kanako O Koyanagi

Publications by authors named "Kanako O Koyanagi"

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23Publications

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Biosynthetic Short Neuropeptides: A Rational Theory Based on Experimental Results for the Missing Pain-Relief Opioid Endomorphin Precursor Gene.

Chembiochem 2019 Aug 26;20(16):2054-2058. Epub 2019 Jul 26.

Graduate School of Information Science and Technology, Hokkaido University, Sapporo, 060-0814, Japan.

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http://dx.doi.org/10.1002/cbic.201900317DOI Listing
August 2019

Genome-wide association mapping focusing on a rice population derived from rice breeding programs in a region.

Breed Sci 2015 Dec 1;65(5):403-10. Epub 2015 Dec 1.

NARO Hokkaido Agricultural Research Center, National Agricultural Research Organization , Sapporo, Hokkaido 062-8555 , Japan.

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http://dx.doi.org/10.1270/jsbbs.65.403DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4671701PMC
December 2015

Inferring cell differentiation processes based on phylogenetic analysis of genome-wide epigenetic information: hematopoiesis as a model case.

Genome Biol Evol 2015 Jan 31;7(3):699-705. Epub 2015 Jan 31.

Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Japan

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http://dx.doi.org/10.1093/gbe/evv024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322552PMC
January 2015

Rice genomes recorded ancient pararetrovirus activities: Virus genealogy and multiple origins of endogenization during rice speciation.

Virology 2014 Dec 5;471-473:141-52. Epub 2014 Nov 5.

Laboratory of Plant Breeding, Research Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00426822140042
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http://dx.doi.org/10.1016/j.virol.2014.09.014DOI Listing
December 2014

Intertypic modular exchanges of genomic segments by homologous recombination at universally conserved segments in human adenovirus species D.

Gene 2014 Aug 12;547(1):10-7. Epub 2014 Apr 12.

Graduate School of Information Science and Technology, Hokkaido University, Sapporo 060-0814, Japan. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S03781119140041
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http://dx.doi.org/10.1016/j.gene.2014.04.018DOI Listing
August 2014

Evolutionary force of AT-rich repeats to trap genomic and episomal DNAs into the rice genome: lessons from endogenous pararetrovirus.

Plant J 2012 Dec 12;72(5):817-28. Epub 2012 Oct 12.

Laboratory of Plant Breeding, Research Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan.

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http://dx.doi.org/10.1111/tpj.12002DOI Listing
December 2012

In silico and in vivo identification of the intermediate filament vimentin that is downregulated downstream of Brachyury during Xenopus embryogenesis.

Gene 2012 Jan 22;491(2):232-6. Epub 2011 Sep 22.

Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, Japan.

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http://dx.doi.org/10.1016/j.gene.2011.09.007DOI Listing
January 2012

Complete genome analysis of a novel intertypic recombinant human adenovirus causing epidemic keratoconjunctivitis in Japan.

J Clin Microbiol 2011 Feb 8;49(2):484-90. Epub 2010 Dec 8.

Department of Microbiology, Fukushima Medical University School of Medicine, 1 Hikarigaoka, Fukushima 960-1295, Japan.

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http://dx.doi.org/10.1128/JCM.01044-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3043511PMC
February 2011

Highly diversified molecular evolution of downstream transcription start sites in rice and Arabidopsis.

Plant Physiol 2009 Mar 31;149(3):1316-24. Epub 2008 Dec 31.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1104/pp.108.131656DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2649393PMC
March 2009

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.

Authors:
Chisato Yamasaki Katsuhiko Murakami Yasuyuki Fujii Yoshiharu Sato Erimi Harada Jun-ichi Takeda Takayuki Taniya Ryuichi Sakate Shingo Kikugawa Makoto Shimada Motohiko Tanino Kanako O Koyanagi Roberto A Barrero Craig Gough Hong-Woo Chun Takuya Habara Hideki Hanaoka Yosuke Hayakawa Phillip B Hilton Yayoi Kaneko Masako Kanno Yoshihiro Kawahara Toshiyuki Kawamura Akihiro Matsuya Naoki Nagata Kensaku Nishikata Akiko Ogura Noda Shin Nurimoto Naomi Saichi Hiroaki Sakai Ryoko Sanbonmatsu Rie Shiba Mami Suzuki Kazuhiko Takabayashi Aiko Takahashi Takuro Tamura Masayuki Tanaka Susumu Tanaka Fusano Todokoro Kaori Yamaguchi Naoyuki Yamamoto Toshihisa Okido Jun Mashima Aki Hashizume Lihua Jin Kyung-Bum Lee Yi-Chueh Lin Asami Nozaki Katsunaga Sakai Masahito Tada Satoru Miyazaki Takashi Makino Hajime Ohyanagi Naoki Osato Nobuhiko Tanaka Yoshiyuki Suzuki Kazuho Ikeo Naruya Saitou Hideaki Sugawara Claire O'Donovan Tamara Kulikova Eleanor Whitfield Brian Halligan Mary Shimoyama Simon Twigger Kei Yura Kouichi Kimura Tomohiro Yasuda Tetsuo Nishikawa Yutaka Akiyama Chie Motono Yuri Mukai Hideki Nagasaki Makiko Suwa Paul Horton Reiko Kikuno Osamu Ohara Doron Lancet Eric Eveno Esther Graudens Sandrine Imbeaud Marie Anne Debily Yoshihide Hayashizaki Clara Amid Michael Han Andreas Osanger Toshinori Endo Michael A Thomas Mika Hirakawa Wojciech Makalowski Mitsuteru Nakao Nam-Soon Kim Hyang-Sook Yoo Sandro J De Souza Maria de Fatima Bonaldo Yoshihito Niimura Vladimir Kuryshev Ingo Schupp Stefan Wiemann Matthew Bellgard Masafumi Shionyu Libin Jia Danielle Thierry-Mieg Jean Thierry-Mieg Lukas Wagner Qinghua Zhang Mitiko Go Shinsei Minoshima Masafumi Ohtsubo Kousuke Hanada Peter Tonellato Takao Isogai Ji Zhang Boris Lenhard Sangsoo Kim Zhu Chen Ursula Hinz Anne Estreicher Kenta Nakai Izabela Makalowska Winston Hide Nicola Tiffin Laurens Wilming Ranajit Chakraborty Marcelo Bento Soares Maria Luisa Chiusano Yutaka Suzuki Charles Auffray Yumi Yamaguchi-Kabata Takeshi Itoh Teruyoshi Hishiki Satoshi Fukuchi Ken Nishikawa Sumio Sugano Nobuo Nomura Yoshio Tateno Tadashi Imanishi Takashi Gojobori

Nucleic Acids Res 2008 Jan 18;36(Database issue):D793-9. Epub 2007 Dec 18.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, Japan.

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http://dx.doi.org/10.1093/nar/gkm999DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238988PMC
January 2008

The Rice Annotation Project Database (RAP-DB): 2008 update.

Nucleic Acids Res 2008 Jan 17;36(Database issue):D1028-33. Epub 2007 Dec 17.

National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1093/nar/gkm978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238920PMC
January 2008

Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes.

Gene 2007 Mar 18;389(2):196-203. Epub 2006 Nov 18.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, AIST Bio-IT Research Bldg 7F, 2-42 Aomi, Tokyo, Japan.

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http://dx.doi.org/10.1016/j.gene.2006.11.007DOI Listing
March 2007

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.

Genome Res 2007 Feb 8;17(2):175-83. Epub 2007 Jan 8.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1101/gr.5509507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781349PMC
February 2007

A web tool for comparative genomics: G-compass.

Gene 2005 Dec 5;364:45-52. Epub 2005 Oct 5.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, AIST Bio-IT Research Building 7F, 2-42, Aomi, Koto-ku, Tokyo, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S037811190500331
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http://dx.doi.org/10.1016/j.gene.2005.05.043DOI Listing
December 2005

Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-InvDB).

Gene 2005 Dec 26;364:99-107. Epub 2005 Sep 26.

Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, AIST Waterfront Bio-IT Research Building, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan.

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http://dx.doi.org/10.1016/j.gene.2005.05.036DOI Listing
December 2005

Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system.

Gene 2005 Jul;353(2):169-76

Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, Japan.

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http://dx.doi.org/10.1016/j.gene.2005.04.027DOI Listing
July 2005

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Authors:
Tadashi Imanishi Takeshi Itoh Yutaka Suzuki Claire O'Donovan Satoshi Fukuchi Kanako O Koyanagi Roberto A Barrero Takuro Tamura Yumi Yamaguchi-Kabata Motohiko Tanino Kei Yura Satoru Miyazaki Kazuho Ikeo Keiichi Homma Arek Kasprzyk Tetsuo Nishikawa Mika Hirakawa Jean Thierry-Mieg Danielle Thierry-Mieg Jennifer Ashurst Libin Jia Mitsuteru Nakao Michael A Thomas Nicola Mulder Youla Karavidopoulou Lihua Jin Sangsoo Kim Tomohiro Yasuda Boris Lenhard Eric Eveno Yoshiyuki Suzuki Chisato Yamasaki Jun-ichi Takeda Craig Gough Phillip Hilton Yasuyuki Fujii Hiroaki Sakai Susumu Tanaka Clara Amid Matthew Bellgard Maria de Fatima Bonaldo Hidemasa Bono Susan K Bromberg Anthony J Brookes Elspeth Bruford Piero Carninci Claude Chelala Christine Couillault Sandro J de Souza Marie-Anne Debily Marie-Dominique Devignes Inna Dubchak Toshinori Endo Anne Estreicher Eduardo Eyras Kaoru Fukami-Kobayashi Gopal R Gopinath Esther Graudens Yoonsoo Hahn Michael Han Ze-Guang Han Kousuke Hanada Hideki Hanaoka Erimi Harada Katsuyuki Hashimoto Ursula Hinz Momoki Hirai Teruyoshi Hishiki Ian Hopkinson Sandrine Imbeaud Hidetoshi Inoko Alexander Kanapin Yayoi Kaneko Takeya Kasukawa Janet Kelso Paul Kersey Reiko Kikuno Kouichi Kimura Bernhard Korn Vladimir Kuryshev Izabela Makalowska Takashi Makino Shuhei Mano Regine Mariage-Samson Jun Mashima Hideo Matsuda Hans-Werner Mewes Shinsei Minoshima Keiichi Nagai Hideki Nagasaki Naoki Nagata Rajni Nigam Osamu Ogasawara Osamu Ohara Masafumi Ohtsubo Norihiro Okada Toshihisa Okido Satoshi Oota Motonori Ota Toshio Ota Tetsuji Otsuki Dominique Piatier-Tonneau Annemarie Poustka Shuang-Xi Ren Naruya Saitou Katsunaga Sakai Shigetaka Sakamoto Ryuichi Sakate Ingo Schupp Florence Servant Stephen Sherry Rie Shiba Nobuyoshi Shimizu Mary Shimoyama Andrew J Simpson Bento Soares Charles Steward Makiko Suwa Mami Suzuki Aiko Takahashi Gen Tamiya Hiroshi Tanaka Todd Taylor Joseph D Terwilliger Per Unneberg Vamsi Veeramachaneni Shinya Watanabe Laurens Wilming Norikazu Yasuda Hyang-Sook Yoo Marvin Stodolsky Wojciech Makalowski Mitiko Go Kenta Nakai Toshihisa Takagi Minoru Kanehisa Yoshiyuki Sakaki John Quackenbush Yasushi Okazaki Yoshihide Hayashizaki Winston Hide Ranajit Chakraborty Ken Nishikawa Hideaki Sugawara Yoshio Tateno Zhu Chen Michio Oishi Peter Tonellato Rolf Apweiler Kousaku Okubo Lukas Wagner Stefan Wiemann Robert L Strausberg Takao Isogai Charles Auffray Nobuo Nomura Takashi Gojobori Sumio Sugano

PLoS Biol 2004 Jun 20;2(6):e162. Epub 2004 Apr 20.

Integrated Database Group, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.

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http://dx.doi.org/10.1371/journal.pbio.0020162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC393292PMC
June 2004