Publications by authors named "Kalliopi Tsafou"

13Publications

BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain.

Cell Syst 2020 04;10(4):333-350.e14

Donnelly Center for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada; Program in Bioinformatics, Boston University, Boston, MA, USA; Center for Network Systems Biology, Boston University, Boston, MA, USA; Department of Biochemistry, Boston University School of Medicine, Boston University, Boston, MA, USA; Departments of Biochemistry and Biology, Boston University, Boston, MA, USA. Electronic address:

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April 2020

Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer.

Cell Rep 2017 03;18(13):3242-3256

Proteomics Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark. Electronic address:

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March 2017

Comprehensive comparison of large-scale tissue expression datasets.

PeerJ 2015 30;3:e1054. Epub 2015 Jun 30.

Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

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July 2015

Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation.

Sci Signal 2015 Apr 28;8(374):ra40. Epub 2015 Apr 28.

Proteomics Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, DK-2200 Copenhagen, Denmark.

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April 2015

DISEASES: text mining and data integration of disease-gene associations.

Methods 2015 Mar 5;74:83-9. Epub 2014 Dec 5.

Department of Disease Systems Biology, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark. Electronic address:

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March 2015

STRING v10: protein-protein interaction networks, integrated over the tree of life.

Nucleic Acids Res 2015 Jan 28;43(Database issue):D447-52. Epub 2014 Oct 28.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, 8057 Zurich, Switzerland

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January 2015

COMPARTMENTS: unification and visualization of protein subcellular localization evidence.

Database (Oxford) 2014 25;2014:bau012. Epub 2014 Feb 25.

Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany, Bioinformatics Core Facility, Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, 4362 Esch-sur-Alzette, Luxembourg, Department of Disease Systems Biology, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark, CSIRO Computational Informatics, Sydney, NSW 2113 Australia and Garvan Institute of Medical Research, Sydney, NSW 2100, Australia.

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August 2014

Reconstruction of the experimentally supported human protein interactome: what can we learn?

BMC Syst Biol 2013 Oct 2;7:96. Epub 2013 Oct 2.

Department of General Biology, School of Medicine, University of Patras, Rio, Patras, Greece.

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October 2013