Publications by authors named "Kai Ye"

100Publications

Chromosome-Scale Genome Assembly of W13939, a Mycoparasitic Fungus and Promising Biocontrol Agent.

Mol Plant Microbe Interact 2020 Oct 26:MPMI06200163A. Epub 2020 Oct 26.

State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.

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http://dx.doi.org/10.1094/MPMI-06-20-0163-ADOI Listing
October 2020

Cell migration regulated by RGD nanospacing and enhanced under moderate cell adhesion on biomaterials.

Biomaterials 2020 Aug 26;263:120327. Epub 2020 Aug 26.

State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai, 200438, China; Zhuhai Fudan Innovation Institute, Zhuhai, Guangdong, 519000, China. Electronic address:

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http://dx.doi.org/10.1016/j.biomaterials.2020.120327DOI Listing
August 2020

Transportation, germs, culture: a dynamic graph model of COVID-19 outbreak.

Quant Biol 2020 Sep 9:1-7. Epub 2020 Sep 9.

MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, 710049 China.

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http://dx.doi.org/10.1007/s40484-020-0215-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7479740PMC
September 2020

circRAE1 promotes colorectal cancer cell migration and invasion by modulating miR-338-3p/TYRO3 axis.

Cancer Cell Int 2020 3;20:430. Epub 2020 Sep 3.

Department of Gastrointestinal Surgery, Second Affiliated Hospital of Fujian Medical University, No.950 Donghai Dajie, Fengze District, Quanzhou, 362000 Fujian China.

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http://dx.doi.org/10.1186/s12935-020-01519-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7470687PMC
September 2020

A Chromosome-Scale Genome Assembly for the Strain Fo5176 To Establish a Model -Fungal Pathosystem.

G3 (Bethesda) 2020 Oct 5;10(10):3549-3555. Epub 2020 Oct 5.

Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel, Neuchâtel, Switzerland

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http://dx.doi.org/10.1534/g3.120.401375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7534451PMC
October 2020

Chromosome-Scale Genome Assembly of Strain Fo47, a Fungal Endophyte and Biocontrol Agent.

Mol Plant Microbe Interact 2020 Sep 28;33(9):1108-1111. Epub 2020 Jul 28.

MOE Key Laboratory for Intelligent Networks & Network Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China.

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http://dx.doi.org/10.1094/MPMI-05-20-0116-ADOI Listing
September 2020

Complete genome sequence analysis of a strain Lactobacillus pentosus ZFM94 and its probiotic characteristics.

Genomics 2020 Sep 22;112(5):3142-3149. Epub 2020 May 22.

Key Laboratory for Food Microbial Technology of Zhejiang Province, Department of Biotechnology, Zhejiang Gongshang University, Hangzhou, Zhejiang 310018, People's Republic of China. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2020.05.015DOI Listing
September 2020

Antioxidant alterations link polycyclic aromatic hydrocarbons to blood pressure in children.

Sci Total Environ 2020 Aug 30;732:138944. Epub 2020 Apr 30.

Laboratory of Environmental Medicine and Developmental Toxicology, Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 511443, Guangdong, China. Electronic address:

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http://dx.doi.org/10.1016/j.scitotenv.2020.138944DOI Listing
August 2020

Probiotic strain Lactobacillus plantarum YYC-3 prevents colon cancer in mice by regulating the tumour microenvironment.

Biomed Pharmacother 2020 Jul 27;127:110159. Epub 2020 Apr 27.

Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing, 100193, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.biopha.2020.110159DOI Listing
July 2020

MSIsensor-pro: Fast, Accurate, and Matched-normal-sample-free Detection of Microsatellite Instability.

Genomics Proteomics Bioinformatics 2020 02 12;18(1):65-71. Epub 2020 Mar 12.

School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China; MOE Key Laboratory for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China; School of Life Science and Technology, Xi'an Jiaotong University, Xi'an 710049, China; Genome Institute, the First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China. Electronic address:

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http://dx.doi.org/10.1016/j.gpb.2020.02.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7393535PMC
February 2020

Dynamic network inference and association computation discover gene modules regulating virulence, mycotoxin and sexual reproduction in Fusarium graminearum.

BMC Genomics 2020 Feb 24;21(1):179. Epub 2020 Feb 24.

MOE Key Lab for Intelligent Networks & Network Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, 710049, China.

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http://dx.doi.org/10.1186/s12864-020-6596-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7041293PMC
February 2020

Regeneration of sciatic nerves by transplanted microvesicles of human neural stem cells derived from embryonic stem cells.

Cell Tissue Bank 2020 Jun 12;21(2):233-248. Epub 2020 Feb 12.

Jiangsu Key Laboratory of Medical Science and Laboratory Medicine, School of Medicine, Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang City, 212013, Jiangsu Province, China.

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http://dx.doi.org/10.1007/s10561-020-09816-5DOI Listing
June 2020

Reduced miR-203 predicts metastasis and poor survival in esophageal carcinoma.

Aging (Albany NY) 2019 12 16;11(24):12114-12130. Epub 2019 Dec 16.

Department of Oncology Surgery, Second Affiliated Hospital of Fujian Medical University, Quanzhou, P.R. China.

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http://dx.doi.org/10.18632/aging.102543DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6949080PMC
December 2019

LAMTOR5 raises abnormal initiation of O-glycosylation in breast cancer metastasis via modulating GALNT1 activity.

Oncogene 2020 Mar 13;39(11):2290-2304. Epub 2019 Dec 13.

State Key Laboratory of Medicinal Chemical Biology, Tianjin Key Laboratory of Protein Sciences, Department of Biochemistry, College of Life Sciences, Nankai University, Tianjin, 300071, China.

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http://dx.doi.org/10.1038/s41388-019-1146-2DOI Listing
March 2020

Microvesicles Derived from Human Embryonic Neural Stem Cells Inhibit the Apoptosis of HL-1 Cardiomyocytes by Promoting Autophagy and Regulating AKT and mTOR via Transporting HSP-70.

Stem Cells Int 2019 24;2019:6452684. Epub 2019 Oct 24.

Jiangsu Key Laboratory of Medical Science and Laboratory Medicine, School of Medicine, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China.

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http://dx.doi.org/10.1155/2019/6452684DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6854932PMC
October 2019

Total saponins of Bolbostemma paniculatum (maxim.) Franquet exert antitumor activity against MDA-MB-231 human breast cancer cells via inhibiting PI3K/Akt/mTOR pathway.

BMC Complement Altern Med 2019 Nov 8;19(1):304. Epub 2019 Nov 8.

Xi'an Hospital of Traditional Chinese Medicine Affiliated to Shaanxi University of Chinese Medicine, Xi'an, Shaanxi, 710021, People's Republic of China.

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http://dx.doi.org/10.1186/s12906-019-2708-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6842232PMC
November 2019

Cotton Candy-Templated Fabrication of Three-Dimensional Ceramic Pathway within Polymer Composite for Enhanced Thermal Conductivity.

ACS Appl Mater Interfaces 2019 Nov 12;11(47):44700-44707. Epub 2019 Nov 12.

Key Laboratory of Marine Materials and Related Technologies, Zhejiang Key Laboratory of Marine Materials and Protective Technologies, Ningbo Institute of Materials Technology and Engineering , Chinese Academy of Sciences , Ningbo 315201 , China.

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http://dx.doi.org/10.1021/acsami.9b15758DOI Listing
November 2019

Enhancement of Antioxidant Activity in O/W Emulsion and Cholesterol-Reducing Capacity of Epigallocatechin by Derivatization with Representative Phytosterols.

J Agric Food Chem 2019 Nov 29;67(45):12461-12471. Epub 2019 Oct 29.

Department of Food Science and Nutrition, Fuli Institute of Food Science, Zhejiang Key Laboratory for Agro-Food Processing, Zhejiang R & D Center for Food Technology and Equipment , Zhejiang University , 866 Yuhangtang Road , Hangzhou 310058 , China.

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http://dx.doi.org/10.1021/acs.jafc.9b04382DOI Listing
November 2019

Emergency Response Using Volunteered Passenger Aircraft Remote Sensing Data: A Case Study on Flood Damage Mapping.

Sensors (Basel) 2019 Sep 25;19(19). Epub 2019 Sep 25.

Guangdong Key Laboratory of Urban Informatics, School of Architecture & Urban Planning, Shenzhen University, Shenzhen 518000, China.

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http://dx.doi.org/10.3390/s19194163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6806073PMC
September 2019

A feasibility study of pulmonary nodule detection by ultralow-dose CT with adaptive statistical iterative reconstruction-V technique.

Eur J Radiol 2019 Oct 7;119:108652. Epub 2019 Sep 7.

Department of Radiology, Peking University Third Hospital, Beijing, China. Electronic address:

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http://dx.doi.org/10.1016/j.ejrad.2019.108652DOI Listing
October 2019

Mapping Genome Variants Sheds Light on Genetic and Phenotypic Differentiation in Chinese.

Authors:
Li Guo Kai Ye

Genomics Proteomics Bioinformatics 2019 06 9;17(3):226-228. Epub 2019 Sep 9.

MOE Key Laboratory for Intelligent Networks and Network Security, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China; The School of Life Science and Technology, Xi'an Jiaotong University, Xi'an 710049, China; The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China. Electronic address:

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http://dx.doi.org/10.1016/j.gpb.2019.09.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6818364PMC
June 2019

A comprehensive investigation on the thermal and toxic hazards of large format lithium-ion batteries with LiFePO cathode.

J Hazard Mater 2020 01 24;381:120916. Epub 2019 Jul 24.

State Key Laboratory of Fire Science, University of Science and Technology of China, Hefei, Anhui 230026, China.

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http://dx.doi.org/10.1016/j.jhazmat.2019.120916DOI Listing
January 2020

Optimized aeration strategies for nitrogen removal efficiency: application of end gas recirculation aeration in the fixed bed biofilm reactor.

Environ Sci Pollut Res Int 2019 Sep 31;26(27):28216-28227. Epub 2019 Jul 31.

College of Environment, Zhejiang University of Technology, 310014, CNo. 18 Chaowang Road, Hangzhou, 310014, People's Republic of China.

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http://dx.doi.org/10.1007/s11356-019-06050-9DOI Listing
September 2019

Named entity recognition from Chinese adverse drug event reports with lexical feature based BiLSTM-CRF and tri-training.

J Biomed Inform 2019 08 16;96:103252. Epub 2019 Jul 16.

School of Science, China Pharmaceutical University, Nanjing, China. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2019.103252DOI Listing
August 2019

MEpurity: estimating tumor purity using DNA methylation data.

Bioinformatics 2019 12;35(24):5298-5300

MOE Key Lab for Intelligent Networks & Networks Security, School of Electronics and Information Engineering, Xi'an Jiaotong University.

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http://dx.doi.org/10.1093/bioinformatics/btz555DOI Listing
December 2019

Aspirin targets P4HA2 through inhibiting NF-κB and LMCD1-AS1/let-7g to inhibit tumour growth and collagen deposition in hepatocellular carcinoma.

EBioMedicine 2019 Jul 2;45:168-180. Epub 2019 Jul 2.

State Key Laboratory of Medicinal Chemical Biology, Tianjin Key Laboratory of Protein Sciences, Department of Biochemistry, College of Life Sciences, Nankai University, Tianjin 300071, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.ebiom.2019.06.048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6642319PMC
July 2019

Human hair keratins promote the regeneration of peripheral nerves in a rat sciatic nerve crush model.

J Mater Sci Mater Med 2019 Jul 4;30(7):82. Epub 2019 Jul 4.

Jinagsu Key Laboratory of Medical Science and Laboratory Medicine, School of Medicine, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, Jiangsu, China.

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http://dx.doi.org/10.1007/s10856-019-6283-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6609591PMC
July 2019

An exploration strategy improves the diversity of de novo ligands using deep reinforcement learning: a case for the adenosine A receptor.

J Cheminform 2019 May 24;11(1):35. Epub 2019 May 24.

Drug Discovery and Safety, Leiden Academic Centre for Drug Research, Einsteinweg 55, Leiden, The Netherlands.

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http://dx.doi.org/10.1186/s13321-019-0355-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6534880PMC
May 2019

One reference genome is not enough.

Genome Biol 2019 05 24;20(1):104. Epub 2019 May 24.

The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.

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http://dx.doi.org/10.1186/s13059-019-1717-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6534916PMC
May 2019

Multi-platform discovery of haplotype-resolved structural variation in human genomes.

Nat Commun 2019 04 16;10(1):1784. Epub 2019 Apr 16.

The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.

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http://www.nature.com/articles/s41467-018-08148-z
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http://dx.doi.org/10.1038/s41467-018-08148-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6467913PMC
April 2019

Enhancement of Galloylation Efficacy of Stigmasterol and β-Sitosterol Followed by Evaluation of Cholesterol-Reducing Activity.

J Agric Food Chem 2019 Mar 11;67(11):3179-3187. Epub 2019 Mar 11.

Department of Food Science and Nutrition, Fuli Institute of Food Science, Zhejiang Key Laboratory for Agro-Food Processing, Zhejiang R & D Center for Food Technology and Equipment , Zhejiang University , 866 Yuhangtang Road , Hangzhou 310058 , China.

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http://dx.doi.org/10.1021/acs.jafc.8b06983DOI Listing
March 2019

Regulation of HIV-1 Gag-Pol Expression by Shiftless, an Inhibitor of Programmed -1 Ribosomal Frameshifting.

Cell 2019 01;176(3):625-635.e14

CAS Key Laboratory of Infection and Immunity, CAS Centre for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674183164
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http://dx.doi.org/10.1016/j.cell.2018.12.030DOI Listing
January 2019

PVTree: A Sequential Pattern Mining Method for Alignment Independent Phylogeny Reconstruction.

Genes (Basel) 2019 01 22;10(2). Epub 2019 Jan 22.

School of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an 710049, China.

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http://dx.doi.org/10.3390/genes10020073DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6410268PMC
January 2019

Variations in right colic vascular anatomy observed during laparoscopic right colectomy.

World J Surg Oncol 2019 Jan 12;17(1):16. Epub 2019 Jan 12.

Department of Tumor Surgery, Second Affiliated Hospital of Fujian Medical University, Quanzhou, People's Republic of China.

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http://dx.doi.org/10.1186/s12957-019-1561-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6330569PMC
January 2019

Similarity-based machine learning support vector machine predictor of drug-drug interactions with improved accuracies.

J Clin Pharm Ther 2019 Apr 18;44(2):268-275. Epub 2018 Dec 18.

School of Science, China Pharmaceutical University, Nanjing, China.

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http://doi.wiley.com/10.1111/jcpt.12786
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http://dx.doi.org/10.1111/jcpt.12786DOI Listing
April 2019

Determining the effects of aeration intensity and reactor height to diameter (H/D) ratio on granule stability based on bubble behavior analysis.

Environ Sci Pollut Res Int 2019 Jan 10;26(1):784-796. Epub 2018 Nov 10.

College of Civil Engineering and Architecture, Zhejiang University of Technology, No. 18 Chaowang Road, Hangzhou, 310014, People's Republic of China.

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http://dx.doi.org/10.1007/s11356-018-3666-7DOI Listing
January 2019

PRESM: personalized reference editor for somatic mutation discovery in cancer genomics.

Bioinformatics 2019 05;35(9):1445-1452

Departments of Biochemistry & Molecular Biology and Medical Genetics, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Canada.

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http://dx.doi.org/10.1093/bioinformatics/bty812DOI Listing
May 2019

The oncoprotein HBXIP promotes human breast cancer growth through down-regulating p53 via miR-18b/MDM2 and pAKT/MDM2 pathways.

Acta Pharmacol Sin 2018 Nov 4;39(11):1787-1796. Epub 2018 Sep 4.

State Key Laboratory of Medicinal Chemical Biology, Department of Biochemistry, College of Life Sciences, Nankai University, Tianjin, 300071, China.

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http://dx.doi.org/10.1038/s41401-018-0034-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6289328PMC
November 2018

Air pollution and body burden of persistent organic pollutants at an electronic waste recycling area of China.

Environ Geochem Health 2019 Feb 31;41(1):93-123. Epub 2018 Aug 31.

Laboratory of Environmental Medicine and Developmental Toxicology, Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, 855 East Xingye Avenue, Guangzhou, 511486, Guangdong, China.

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http://link.springer.com/10.1007/s10653-018-0176-y
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http://dx.doi.org/10.1007/s10653-018-0176-yDOI Listing
February 2019

The opium poppy genome and morphinan production.

Science 2018 10 30;362(6412):343-347. Epub 2018 Aug 30.

MOE Key Lab for Intelligent Networks and Networks Security, School of Electronics and Information Engineering, Xi'an Jiaotong University, Xi'an, 710049 China.

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http://www.sciencemag.org/lookup/doi/10.1126/science.aat4096
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http://dx.doi.org/10.1126/science.aat4096DOI Listing
October 2018

Split-Read Indel and Structural Variant Calling Using PINDEL.

Methods Mol Biol 2018 ;1833:95-105

Wellcome Trust Sanger Institute, Hinxton, UK.

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http://dx.doi.org/10.1007/978-1-4939-8666-8_7DOI Listing
March 2019

Cold atmospheric plasma as a potential tool for multiple myeloma treatment.

Oncotarget 2018 Apr 6;9(26):18002-18017. Epub 2018 Apr 6.

State Key Laboratory of Electrical Insulation and Power Equipment, Center for Plasma Biomedicine, Xi'an Jiaotong University, Xi'an, Shaanxi, 710049, P.R. China.

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http://dx.doi.org/10.18632/oncotarget.24649DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5915053PMC
April 2018

Heavy metal exposure has adverse effects on the growth and development of preschool children.

Environ Geochem Health 2019 Feb 25;41(1):309-321. Epub 2018 Apr 25.

Key Laboratory in Environmental Exposure and Health of Guangzhou and Guangdong, School of Environment, Jinan University, Guangzhou, 510632, Guangdong, China.

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http://dx.doi.org/10.1007/s10653-018-0114-zDOI Listing
February 2019

Degradation rate affords a dynamic cue to regulate stem cells beyond varied matrix stiffness.

Biomaterials 2018 09 12;178:467-480. Epub 2018 Apr 12.

State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200438, China. Electronic address:

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http://dx.doi.org/10.1016/j.biomaterials.2018.04.021DOI Listing
September 2018

An improved burden-test pipeline for identifying associations from rare germline and somatic variants.

BMC Genomics 2017 10 16;18(Suppl 7):753. Epub 2017 Oct 16.

School of Management, Xi'an Jiaotong University, Xi'an, 710049, Shaanxi, China.

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http://dx.doi.org/10.1186/s12864-017-4133-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5657102PMC
October 2017

Stability and recovery of DNA origami structure with cation concentration.

Nanotechnology 2018 Jan;29(3):035102

School of Materials Science and Engineering, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China.

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http://dx.doi.org/10.1088/1361-6528/aa9dadDOI Listing
January 2018

Loss of BMI-1 dampens migration and EMT of colorectal cancer in inflammatory microenvironment through TLR4/MD-2/MyD88-mediated NF-κB signaling.

J Cell Biochem 2018 02 18;119(2):1922-1930. Epub 2017 Sep 18.

Department of Oncology Surgery, Second Affiliated Hospital of Fujian Medical University, Quanzhou, PR China.

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http://dx.doi.org/10.1002/jcb.26353DOI Listing
February 2018

Variation and treatment of vessels in laparoscopic right hemicolectomy.

Surg Endosc 2018 03 21;32(3):1583-1584. Epub 2017 Jul 21.

Department of General Surgery, The First Affiliated Hospital of Soochow University, Suzhou, 215006, Jiangsu Province, China.

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http://dx.doi.org/10.1007/s00464-017-5751-2DOI Listing
March 2018

Microvesicles released from human embryonic stem cell derived-mesenchymal stem cells inhibit proliferation of leukemia cells.

Oncol Rep 2017 Aug 16;38(2):1013-1020. Epub 2017 Jun 16.

School of Medicine, Jiangsu University, Zhenjiang, Jiangsu 212013, P.R. China.

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http://dx.doi.org/10.3892/or.2017.5729DOI Listing
August 2017

Next-generation sequencing improves thalassemia carrier screening among premarital adults in a high prevalence population: the Dai nationality, China.

Genet Med 2017 09 26;19(9):1022-1031. Epub 2017 Jan 26.

Yunnan Provincial Key Laboratory For Birth Defects and Genetic Diseases, The First People's Hospital of Yunnan Province, Kunming, China.

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http://www.nature.com/doifinder/10.1038/gim.2016.218
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http://dx.doi.org/10.1038/gim.2016.218DOI Listing
September 2017

Precision Medicine: What Challenges Are We Facing?

Genomics Proteomics Bioinformatics 2016 10 13;14(5):253-261. Epub 2016 Oct 13.

CAS Key Laboratory of Genome Sciences and Information, Chinese Academy of Sciences, Beijing 100101, China. Electronic address:

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http://dx.doi.org/10.1016/j.gpb.2016.10.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5093857PMC
October 2016

Subcellular cell geometry on micropillars regulates stem cell differentiation.

Biomaterials 2016 12 30;111:27-39. Epub 2016 Sep 30.

State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai, 200433, China. Electronic address:

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http://dx.doi.org/10.1016/j.biomaterials.2016.09.023DOI Listing
December 2016

TLR4 siRNA inhibits proliferation and invasion in colorectal cancer cells by downregulating ACAT1 expression.

Life Sci 2016 Jun 10;155:133-9. Epub 2016 May 10.

Department of Oncology Surgery, Second Affiliated Hospital of Fujian Medical University, Quanzhou 362000, PR China.

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http://dx.doi.org/10.1016/j.lfs.2016.05.012DOI Listing
June 2016

Interplay of Matrix Stiffness and Cell-Cell Contact in Regulating Differentiation of Stem Cells.

ACS Appl Mater Interfaces 2016 08 24;8(34):21903-13. Epub 2015 Nov 24.

State Key Laboratory of Molecular Engineering of Polymers, Collaborative Innovation Center of Polymers and Polymer Composite Materials, Department of Macromolecular Science, Advanced Materials Laboratory, Fudan University , Shanghai 200433, China.

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http://dx.doi.org/10.1021/acsami.5b09746DOI Listing
August 2016

A Tandem Duplicate of Anti-Müllerian Hormone with a Missense SNP on the Y Chromosome Is Essential for Male Sex Determination in Nile Tilapia, Oreochromis niloticus.

PLoS Genet 2015 Nov 20;11(11):e1005678. Epub 2015 Nov 20.

Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Key Laboratory of Aquatic Science of Chongqing, School of Life Science, Southwest University, Chongqing, China.

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http://dx.doi.org/10.1371/journal.pgen.1005678DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4654491PMC
November 2015

Effects of Nanoscale Spatial Arrangement of Arginine-Glycine-Aspartate Peptides on Dedifferentiation of Chondrocytes.

Nano Lett 2015 Nov 28;15(11):7755-65. Epub 2015 Oct 28.

State Key Laboratory of Molecular Engineering of Polymers, Collaborative Innovation Center of Polymers and Polymer Composite Materials, Department of Macromolecular Science, Advanced Materials Laboratory, Fudan University , Shanghai 200433, China.

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http://dx.doi.org/10.1021/acs.nanolett.5b04043DOI Listing
November 2015

An integrated map of structural variation in 2,504 human genomes.

Nature 2015 Oct;526(7571):75-81

European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Meyerhofstr. 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1038/nature15394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617611PMC
October 2015

Effects of RGD nanospacing on chondrogenic differentiation of mesenchymal stem cells.

J Mater Chem B 2015 Jul 3;3(26):5197-5209. Epub 2015 Jun 3.

State Key Laboratory of Molecular Engineering of Polymers, Collaborative Innovation Center of Polymers and Polymer Composite Materials, Department of Macromolecular Science, Advanced Materials Laboratory, Fudan University, Shanghai 200433, China.

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http://dx.doi.org/10.1039/c5tb00455aDOI Listing
July 2015

Matrix Stiffness and Nanoscale Spatial Organization of Cell-Adhesive Ligands Direct Stem Cell Fate.

Nano Lett 2015 Jul 3;15(7):4720-9. Epub 2015 Jun 3.

State Key Laboratory of Molecular Engineering of Polymers, Collaborative Innovation Center of Polymers and Polymer Composite Materials, Department of Macromolecular Science, Advanced Materials Laboratory, Fudan University, Shanghai 200433, China.

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http://dx.doi.org/10.1021/acs.nanolett.5b01619DOI Listing
July 2015

A gain of function mutation in TNFRSF11B encoding osteoprotegerin causes osteoarthritis with chondrocalcinosis.

Ann Rheum Dis 2015 Sep 17;74(9):1756-62. Epub 2014 Apr 17.

Department of Medical Statistics and Bioinformatics, Section Molecular Epidemiology, Leiden University Medical Center, Leiden, The Netherlands Netherlands Consortium for Healthy Ageing, Leiden, The Netherlands.

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http://ard.bmj.com/lookup/doi/10.1136/annrheumdis-2013-20514
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http://dx.doi.org/10.1136/annrheumdis-2013-205149DOI Listing
September 2015

MSIsensor: microsatellite instability detection using paired tumor-normal sequence data.

Bioinformatics 2014 Apr 25;30(7):1015-6. Epub 2013 Dec 25.

Departments of Genetics and Mathematics, The Genome Institute, Department of Genetics, Division of Statistical Genomics, Department of Medicine and Siteman Cancer Center, Washington University in St. Louis, MO 63108, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btt755DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3967115PMC
April 2014

Adhesion, proliferation, and differentiation of mesenchymal stem cells on RGD nanopatterns of varied nanospacings.

Organogenesis 2013 Oct 19;9(4):280-6. Epub 2013 Aug 19.

State Key Laboratory of Molecular Engineering of Polymers; Department of Macromolecular Science; Fudan University; Shanghai, PR China.

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http://dx.doi.org/10.4161/org.26080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3903697PMC
October 2013

Effect of RGD nanospacing on differentiation of stem cells.

Biomaterials 2013 Apr 26;34(12):2865-74. Epub 2013 Jan 26.

State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Advanced Materials Laboratory, Fudan University, Shanghai 200433, China.

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http://dx.doi.org/10.1016/j.biomaterials.2013.01.021DOI Listing
April 2013

Involvement of FGF9/16/20 subfamily in female germ cell development of the Nile tilapia, Oreochromis niloticus.

Fish Physiol Biochem 2012 Oct 27;38(5):1427-39. Epub 2012 Mar 27.

Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Southwest University, Chongqing, China.

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http://dx.doi.org/10.1007/s10695-012-9630-4DOI Listing
October 2012

Cationic peptidopolysaccharides show excellent broad-spectrum antimicrobial activities and high selectivity.

Adv Mater 2012 Aug 21;24(30):4130-7. Epub 2012 Mar 21.

School of Chemical and Biomedical Engineering, Nanyang Technological University, 62 Nanyang Drive, Singapore 637459, Singapore.

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http://dx.doi.org/10.1002/adma.201104186DOI Listing
August 2012

PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data.

Bioinformatics 2012 Feb 4;28(4):479-86. Epub 2012 Jan 4.

Department of Molecular Epidemiology, Medical Statistics and Bioinformatics, Leiden University Medical Center, Leiden, The Netherlands.

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http://dx.doi.org/10.1093/bioinformatics/btr712DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3278765PMC
February 2012

Functionally biased modulation of A(3) adenosine receptor agonist efficacy and potency by imidazoquinolinamine allosteric enhancers.

Biochem Pharmacol 2011 Sep 21;82(6):658-68. Epub 2011 Jun 21.

Molecular Recognition Section, Laboratory of Bioorganic Chemistry, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0810, USA.

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http://dx.doi.org/10.1016/j.bcp.2011.06.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3152598PMC
September 2011

Human embryonic stem cell-derived mesenchymal stem cells as cellular delivery vehicles for prodrug gene therapy of glioblastoma.

Hum Gene Ther 2011 Nov 16;22(11):1365-77. Epub 2011 May 16.

Institute of Bioengineering and Nanotechnology, Singapore 117602, Singapore.

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http://dx.doi.org/10.1089/hum.2010.212DOI Listing
November 2011

G protein-coupled receptor heteromerization: a role in allosteric modulation of ligand binding.

Mol Pharmacol 2011 Jun 17;79(6):1044-52. Epub 2011 Mar 17.

Mount Sinai School of Medicine, Department of Pharmacology and System Therapeutics, New York, NY 10029, USA.

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http://dx.doi.org/10.1124/mol.110.070847DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102551PMC
June 2011

Evaluating oligonucleotide properties for DNA microarray probe design.

Nucleic Acids Res 2010 Jun 17;38(11):e121. Epub 2010 Mar 17.

Lechner-Haag Genomics Core, Vaccine Research Institute of San Diego, 10835 Road to the Cure, Suite 150, San Diego, CA 92121, USA.

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http://dx.doi.org/10.1093/nar/gkq039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2887943PMC
June 2010

Mining Unique- Substrings from Genomes.

J Proteomics Bioinform 2010 Mar;3(3):099-103

EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.4172/jpb.1000127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5894807PMC
March 2010

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.

Bioinformatics 2009 Nov 26;25(21):2865-71. Epub 2009 Jun 26.

EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1093/bioinformatics/btp394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2781750PMC
November 2009

Flexible modulation of agonist efficacy at the human A3 adenosine receptor by the imidazoquinoline allosteric enhancer LUF6000.

BMC Pharmacol 2008 Dec 12;8:20. Epub 2008 Dec 12.

Molecular Recognition Section, Laboratory of Bioorganic Chemistry, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892-0810, USA.

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http://dx.doi.org/10.1186/1471-2210-8-20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2625337PMC
December 2008

Differential gene expression in the brain of Sebastiscus marmoratus in response to exposure to polychlorinated biphenyls (PCBs).

Mar Environ Res 2008 Dec 16;66(5):548-52. Epub 2008 Sep 16.

Key Laboratory of the Ministry of Education for Cell Biology and Tumor Cell Engineering, School of Life Sciences, Xiamen University, Xiamen City 361005, P R China.

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http://dx.doi.org/10.1016/j.marenvres.2008.09.001DOI Listing
December 2008