Publications by authors named "Kahn Rhrissorrakrai"

25Publications

Analysis on GENIE reveals novel recurrent variants that affect molecular diagnosis of sizable number of cancer patients.

BMC Cancer 2019 Feb 1;19(1):114. Epub 2019 Feb 1.

IBM TJ Watson Research Center, Yorktown Heights, NY, 10598, USA.

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February 2019

Watson for Genomics: Moving Personalized Medicine Forward.

Trends Cancer 2016 08 21;2(8):392-395. Epub 2016 Jul 21.

Computational Genomics, IBM Research, Yorktown Heights, NY 10598, USA.

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August 2016

Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma.

Neurol Genet 2017 Aug 11;3(4):e164. Epub 2017 Jul 11.

New York Genome Center (K.O.W., M.O.F., N.R., A.-K.E., B.-J.C., K.A., M.S., V.V., E.A.B., J.L.M.V., M.C.Z., V.J., R.B.D.); IBM Thomas J. Watson Research Center (T.K., K.R., F.U., R.N., E.B., L.P., A.K.R.); Columbia University Medical Center (J.N.B., A.B.L., P.C., V.J.); Memorial Sloan-Kettering Cancer Center (C.G.), New York, NY; IBM Watson Health (S.H., V.V.M.), Boca Raton, FL; Laboratory of Molecular Neuro-Oncology (M.O.F., R.B.D.), and Howard Hughes Medical Institute (R.B.D.), The Rockefeller University, New York, NY. B.-J.C. is currently affiliated with Google, New York, NY. V.V. is currently affiliated with 23andMe, Inc., Mountain View, CA. E.A.B. is currently affiliated with Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany.

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August 2017

Erratum to: MINE: Module Identification in Networks.

BMC Bioinformatics 2016 Feb 17;17:89. Epub 2016 Feb 17.

Center for Genomics and Systems Biology, Department of Biology, New York University, 12 Waverly Place, New York, NY, 10003, USA.

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February 2016

A crowd-sourcing approach for the construction of species-specific cell signaling networks.

Bioinformatics 2015 Feb 7;31(4):484-91. Epub 2014 Oct 7.

IBM Research, Computational Biology Center, Yorktown Heights, NY 10598, USA, ProtATonce Ltd, Scientific Park Lefkippos, Patriarchou Grigoriou & Neapoleos 15343 Ag. Paraskevi, Attiki, Greece, National Technical University of Athens, Heroon Polytechniou 9, Zografou, 15780, Greece and Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland.

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February 2015

Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge.

Bioinformatics 2015 Feb 17;31(4):471-83. Epub 2014 Sep 17.

IBM T.J. Watson Research Center, Computational Biology Center, Yorktown Heights, NY 10003, USA, Philip Morris International R&D, Philip Morris Products S.A., 2000 Neuchâtel, Switzerland, Telethon Institute of Genetics and Medicine, Via Pietro Castellino, 111, 80131 Naples, Italy, ProtATonce Ltd, Scientific Park Lefkippos, Patriarchou Grigoriou & Neapoleos 15343 Ag. Paraskevi, Attiki and National Technical University of Athens, Heroon Polytechniou 9, Zografou 15780, Greece.

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February 2015

Inter-species inference of gene set enrichment in lung epithelial cells from proteomic and large transcriptomic datasets.

Bioinformatics 2015 Feb 24;31(4):492-500. Epub 2014 Aug 24.

Kavli Institute for Theoretical Physics, Kohn Hall, University of California, Santa Barbara, CA 93106, USA, Department of Physics, Department of Molecular Biology and Biochemistry, Busch Campus, Rutgers University, Piscataway, NJ 08854, USA, Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, 9700 AK Groningen, The Netherlands and IBM T.J. Watson Research Center, Computational Biology, Yorktown Heights, NY 10003, USA.

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February 2015

Inter-species pathway perturbation prediction via data-driven detection of functional homology.

Bioinformatics 2015 Feb 22;31(4):501-8. Epub 2014 Aug 22.

Department of Biology, Center for Genomics & Systems Biology, New York University, New York, NY 10003, Perinatology Research Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD and Detroit, MI 48201, USA, IBM Thomas J. Watson Research Center, Yorktown Heights, NY 10598, Computer Science Department, Courant institute of Mathematical Sciences, New York University, New York, NY 10012 and Department of Computer Science, Wayne State University, Detroit, MI 48202, USA Department of Biology, Center for Genomics & Systems Biology, New York University, New York, NY 10003, Perinatology Research Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD and Detroit, MI 48201, USA, IBM Thomas J. Watson Research Center, Yorktown Heights, NY 10598, Computer Science Department, Courant institute of Mathematical Sciences, New York University, New York, NY 10012 and Department of Computer Science, Wayne State University, Detroit, MI 48202, USA.

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February 2015

Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge.

Bioinformatics 2015 Feb 23;31(4):462-70. Epub 2014 Jul 23.

Kavli Institute for Theoretical Physics, Kohn Hall, University of California, Santa Barbara, CA 93106, Perinatology Research Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD, and Detroit, MI 48201, USA, College of Plant Protection and College of Science, Hunan Agricultural University, Changsha, 410128, China, School of Computing, Clemson University, Clemson, SC 29634, USA, Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, 9700 AK Groningen, The Netherlands, IBM T.J. Watson Research Center, Computational Biology Center, Yorktown Heights, NY 10003, Department of Molecular Biology and Biochemistry, Department of Physics and BioMaPS Institute, Rutgers University, Piscataway, NJ 08854 and Department of Computer Science, Wayne State University, Detroit, MI 48202, USA Kavli Institute for Theoretical Physics, Kohn Hall, University of California, Santa Barbara, CA 93106, Perinatology Research Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD, and Detroit, MI 48201, USA, College of Plant Protection and College of Science, Hunan Agricultural University, Changsha, 410128, China, School of Computing, Clemson University, Clemson, SC 29634, USA, Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, 9700 AK Groningen, The Netherlands, IBM T.J. Watson Research Center, Computational Biology Center, Yorktown Heights, NY 10003, Department of Molecular Biology and Biochemistry, Department of Physics and BioMaPS Institute, Rutgers University, Piscataway, NJ 08854 and Department of Computer Science, Wayne State University, Detroit, MI 48202, USA.

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February 2015

Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge.

Bioinformatics 2015 Feb 3;31(4):453-61. Epub 2014 Jul 3.

Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, 9700 AK Groningen, The Netherlands, University of California, Irvine, CA 92617, Department of Physics and Department of Molecular Biology and Biochemistry, Busch Campus, Rutgers University, Piscataway, NJ 08854, IBM T.J. Watson Research Center, Computational Biology, Yorktown Heights, NY 10598, Kavli Institute for Theoretical Physics, University of California, Santa Barbara, CA 93106, USA.

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February 2015

Electrical activity can impose time of day on the circadian transcriptome of pacemaker neurons.

Curr Biol 2012 Oct 30;22(20):1871-80. Epub 2012 Aug 30.

Department of Biology, New York University, 100 Washington Square East, New York, NY 10003, USA.

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October 2012

Networks in Caenorhabditis elegans.

Curr Opin Genet Dev 2011 Dec 4;21(6):787-98. Epub 2011 Nov 4.

Center for Genomics and Systems Biology and Department of Biology, New York University, 12 Waverly Place, 8th floor, New York, NY 10012, USA.

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December 2011

MINE: Module Identification in Networks.

BMC Bioinformatics 2011 May 23;12:192. Epub 2011 May 23.

Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.

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May 2011

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

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December 2010

Benzo[a]pyrene diol epoxide stimulates an inflammatory response in normal human lung fibroblasts through a p53 and JNK mediated pathway.

Carcinogenesis 2010 Jun 9;31(6):1149-57. Epub 2010 Apr 9.

Department of Biology, New York University, 1009 Silver Center, 100 Washington Square East, New York, NY 10003, USA.

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June 2010

Mating induces an immune response and developmental switch in the Drosophila oviduct.

Proc Natl Acad Sci U S A 2008 Sep 25;105(37):13912-7. Epub 2008 Aug 25.

Department of Entomology, Hebrew University, Rehovot 76100, Israel.

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September 2008