Publications by authors named "Ka Ming Nip"

11Publications

RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes.

Genome Res 2020 Aug 17;30(8):1191-1200. Epub 2020 Aug 17.

Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada V5Z 4S6.

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http://dx.doi.org/10.1101/gr.260174.119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7462077PMC
August 2020

Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data.

Gigascience 2020 Jun;9(6)

Canada's Michael Smith Genome Sciences Centre, 100 - 570 W 7th Ave, Vancouver, BC Cancer, BC V5Z 4S6 Canada.

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http://dx.doi.org/10.1093/gigascience/giaa061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7285873PMC
June 2020

Fusion-Bloom: fusion detection in assembled transcriptomes.

Bioinformatics 2020 04;36(7):2256-2257

Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, BC V5Z 4S6, Canada.

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http://dx.doi.org/10.1093/bioinformatics/btz902DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7141844PMC
April 2020

TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data.

BMC Med Genomics 2018 Sep 10;11(1):79. Epub 2018 Sep 10.

Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, 100-570 West 7th Ave, Vancouver, BC, V5Z 4S6, Canada.

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http://dx.doi.org/10.1186/s12920-018-0402-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6131862PMC
September 2018

Kleat: cleavage site analysis of transcriptomes.

Pac Symp Biocomput 2015 :347-58

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4350765PMC
April 2016

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.

Bioinformatics 2014 Dec 20;30(23):3402-4. Epub 2014 Aug 20.

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC V5Z 4S6, Canada.

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http://dx.doi.org/10.1093/bioinformatics/btu558DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4816029PMC
December 2014

Subgroup-specific structural variation across 1,000 medulloblastoma genomes.

Authors:
Paul A Northcott David J H Shih John Peacock Livia Garzia A Sorana Morrissy Thomas Zichner Adrian M Stütz Andrey Korshunov Jüri Reimand Steven E Schumacher Rameen Beroukhim David W Ellison Christian R Marshall Anath C Lionel Stephen Mack Adrian Dubuc Yuan Yao Vijay Ramaswamy Betty Luu Adi Rolider Florence M G Cavalli Xin Wang Marc Remke Xiaochong Wu Readman Y B Chiu Andy Chu Eric Chuah Richard D Corbett Gemma R Hoad Shaun D Jackman Yisu Li Allan Lo Karen L Mungall Ka Ming Nip Jenny Q Qian Anthony G J Raymond Nina T Thiessen Richard J Varhol Inanc Birol Richard A Moore Andrew J Mungall Robert Holt Daisuke Kawauchi Martine F Roussel Marcel Kool David T W Jones Hendrick Witt Africa Fernandez-L Anna M Kenney Robert J Wechsler-Reya Peter Dirks Tzvi Aviv Wieslawa A Grajkowska Marta Perek-Polnik Christine C Haberler Olivier Delattre Stéphanie S Reynaud François F Doz Sarah S Pernet-Fattet Byung-Kyu Cho Seung-Ki Kim Kyu-Chang Wang Wolfram Scheurlen Charles G Eberhart Michelle Fèvre-Montange Anne Jouvet Ian F Pollack Xing Fan Karin M Muraszko G Yancey Gillespie Concezio Di Rocco Luca Massimi Erna M C Michiels Nanne K Kloosterhof Pim J French Johan M Kros James M Olson Richard G Ellenbogen Karel Zitterbart Leos Kren Reid C Thompson Michael K Cooper Boleslaw Lach Roger E McLendon Darell D Bigner Adam Fontebasso Steffen Albrecht Nada Jabado Janet C Lindsey Simon Bailey Nalin Gupta William A Weiss László Bognár Almos Klekner Timothy E Van Meter Toshihiro Kumabe Teiji Tominaga Samer K Elbabaa Jeffrey R Leonard Joshua B Rubin Linda M Liau Erwin G Van Meir Maryam Fouladi Hideo Nakamura Giuseppe Cinalli Miklós Garami Peter Hauser Ali G Saad Achille Iolascon Shin Jung Carlos G Carlotti Rajeev Vibhakar Young Shin Ra Shenandoah Robinson Massimo Zollo Claudia C Faria Jennifer A Chan Michael L Levy Poul H B Sorensen Matthew Meyerson Scott L Pomeroy Yoon-Jae Cho Gary D Bader Uri Tabori Cynthia E Hawkins Eric Bouffet Stephen W Scherer James T Rutka David Malkin Steven C Clifford Steven J M Jones Jan O Korbel Stefan M Pfister Marco A Marra Michael D Taylor

Nature 2012 Aug;488(7409):49-56

Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario M5G 1L7, Canada.

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http://is.muni.cz/repo/990835/nature11327.pdf
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http://www.nature.com/doifinder/10.1038/nature11327
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http://dx.doi.org/10.1038/nature11327DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3683624PMC
August 2012