Jyotishman Pathak

Jyotishman Pathak

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Jyotishman Pathak

Publications by authors named "Jyotishman Pathak"

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Social determinants of health in mental health care and research: a case for greater inclusion.

J Am Med Inform Assoc 2019 Aug;26(8-9):895-899

Department of Healthcare Policy and Research, Weill Cornell Medicine, New York, New York, USA.

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http://dx.doi.org/10.1093/jamia/ocz049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6696493PMC
August 2019

Stratified Mortality Prediction of Patients with Acute Kidney Injury in Critical Care.

Stud Health Technol Inform 2019 Aug;264:462-466

Weill Cornell Medicine, Cornell University, New York, New York, USA.

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http://dx.doi.org/10.3233/SHTI190264DOI Listing
August 2019

Using Electronic Health Records and Machine Learning to Predict Postpartum Depression.

Stud Health Technol Inform 2019 Aug;264:888-892

Weill Cornell Medicine, Cornell University, New York, New York, USA.

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http://dx.doi.org/10.3233/SHTI190351DOI Listing
August 2019

Developing a portable natural language processing based phenotyping system.

BMC Med Inform Decis Mak 2019 Apr 4;19(Suppl 3):78. Epub 2019 Apr 4.

Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.

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http://dx.doi.org/10.1186/s12911-019-0786-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6448187PMC
April 2019

A Framework for Data Quality Assessment in Clinical Research Datasets.

AMIA Annu Symp Proc 2017 16;2017:1080-1089. Epub 2018 Apr 16.

Weill Cornell Medicine, New York, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5977591PMC
March 2019

Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes.

AMIA Annu Symp Proc 2018 5;2018:147-156. Epub 2018 Dec 5.

Information Technologies and Services Department, Weill Cornell Medicine, New York, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6371338PMC
December 2018

The Role of Next-Generation Sequencing in Precision Medicine: A Review of Outcomes in Oncology.

J Pers Med 2018 Sep 17;8(3). Epub 2018 Sep 17.

Division of Health Informatics, Department of Healthcare Policy and Research, Weill Cornell Medicine, New York, NY 10065, USA.

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http://dx.doi.org/10.3390/jpm8030030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6164147PMC
September 2018

The potential value of social determinants of health in predicting health outcomes.

J Am Med Inform Assoc 2018 08;25(8):1109-1110

Division of Health Informatics, Department of Healthcare Policy & Research, Weill Cornell Medical College, New York, NY, USA and.

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http://dx.doi.org/10.1093/jamia/ocy061DOI Listing
August 2018

From Sour Grapes to Low-Hanging Fruit: A Case Study Demonstrating a Practical Strategy for Natural Language Processing Portability.

AMIA Jt Summits Transl Sci Proc 2018 18;2017:104-112. Epub 2018 May 18.

Center for Health Informatics and Bioinformatics, NYU Langone Medical Center, New York, New York.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961788PMC
May 2018

Electronic Health Record Phenotypes for Precision Medicine: Perspectives and Caveats From Treatment of Breast Cancer at a Single Institution.

Clin Transl Sci 2018 01;11(1):85-92

Department of Pharmaceutical Care & Health Systems, College of Pharmacy, University of Minnesota, Minneapolis, Minnesota, USA.

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http://dx.doi.org/10.1111/cts.12514DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5759745PMC
January 2018

Standardized Representation of Clinical Study Data Dictionaries with CIMI Archetypes.

AMIA Annu Symp Proc 2016 10;2016:1119-1128. Epub 2017 Feb 10.

Mayo Clinic College of Medicine, Rochester, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333261PMC
August 2017

Improving risk prediction for depression via Elastic Net regression - Results from Korea National Health Insurance Services Data.

AMIA Annu Symp Proc 2016 10;2016:1860-1869. Epub 2017 Feb 10.

Department of Healthcare Policy & Research, Weill Cornell Medical College, New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333336PMC
August 2017

D2Refine: A Platform for Clinical Research Study Data Element Harmonization and Standardization.

AMIA Jt Summits Transl Sci Proc 2017 26;2017:259-267. Epub 2017 Jul 26.

Mayo Clinic College of Medicine, Rochester, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543382PMC
July 2017

Semi-Supervised Approach to Monitoring Clinical Depressive Symptoms in Social Media.

Proc IEEE ACM Int Conf Adv Soc Netw Anal Min 2017 Jul-Aug;2017:1191-1198. Epub 2017 Jul 31.

Kno.e.sis Center, Wright State University, Dayton, OH, USA.

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http://dx.doi.org/10.1145/3110025.3123028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5914530PMC
July 2017

Time to achieving therapeutic international normalized ratio increases hospital length of stay after heart valve replacement surgery.

Am Heart J 2017 May 16;187:70-77. Epub 2017 Feb 16.

Department of Cardiovascular Diseases, Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, MN. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00028703173004
Publisher Site
http://dx.doi.org/10.1016/j.ahj.2017.02.011DOI Listing
May 2017

Identification of unique venous thromboembolism-susceptibility variants in African-Americans.

Thromb Haemost 2017 04 16;117(4):758-768. Epub 2017 Feb 16.

John A. Heit, MD, Stabile 6-Hematology Research, Mayo Clinic, 200 First Street, SW, Rochester, MN 55905, USA, Tel.: +1 507 284 4634, Fax: +1 507 266 9302, E-mail:

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http://dx.doi.org/10.1160/TH16-08-0652DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5831339PMC
April 2017

Effects of Plasma Transfusion on Perioperative Bleeding Complications: A Machine Learning Approach.

Stud Health Technol Inform 2015 ;216:721-5

Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4899868PMC
December 2016

Using EHRs for Heart Failure Therapy Recommendation Using Multidimensional Patient Similarity Analytics.

Stud Health Technol Inform 2015 ;210:369-73

Center for the Science of Health Care Delivery, Mayo Clinic, Rochester, MN, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4899831PMC
November 2016

Using EHR-Linked Biobank Data to Study Metformin Pharmacogenomics.

Stud Health Technol Inform 2015 ;210:914-8

Mayo Clinic, Department of Health of Sciences Research.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5051541PMC
November 2016

Developing a modular architecture for creation of rule-based clinical diagnostic criteria.

BioData Min 2016 21;9:33. Epub 2016 Oct 21.

Department of Health Sciences Research, Mayo Clinic, 200 First Street, SW, Rochester, MN 55905 USA.

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http://dx.doi.org/10.1186/s13040-016-0113-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5073928PMC
October 2016

Minimum information required for a DMET experiment reporting.

Pharmacogenomics 2016 09 22;17(14):1533-45. Epub 2016 Aug 22.

Laboratory of Pharmacogenomics, Section of Neuroscience & Clinical Pharmacology, Department of Biomedical Sciences, University of Cagliari, sp 8 Sestu-Monserrato, Km 0.700, 09042 Cagliari, Italy.

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http://dx.doi.org/10.2217/pgs-2016-0015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6123892PMC
September 2016

Practical considerations for implementing genomic information resources. Experiences from eMERGE and CSER.

Appl Clin Inform 2016 09 21;7(3):870-82. Epub 2016 Sep 21.

Luke Rasmussen, Division of Health and Biomedical Informatics, Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, 750 North Lake Shore Drive, 11th Floor, Rubloff Building, Chicago, IL 60611, Phone: 312-503-2823.

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http://dx.doi.org/10.4338/ACI-2016-04-RA-0060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5052555PMC
September 2016

A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform.

AMIA Jt Summits Transl Sci Proc 2016 20;2016:167-75. Epub 2016 Jul 20.

NorthShore University HealthSystem, Evanston, IL.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001760PMC
August 2016

Clinical phenotyping in selected national networks: demonstrating the need for high-throughput, portable, and computational methods.

Artif Intell Med 2016 07 25;71:57-61. Epub 2016 Jun 25.

Departments of Biomedical Informatics and Medicine, Vanderbilt University, 2525 West End Ave, Suite 672, Nashville, TN 37203, USA. Electronic address:

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http://dx.doi.org/10.1016/j.artmed.2016.05.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5480212PMC
July 2016

Improvement in Cardiovascular Risk Prediction with Electronic Health Records.

J Cardiovasc Transl Res 2016 06 9;9(3):214-22. Epub 2016 Mar 9.

Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN, 55905, USA.

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http://dx.doi.org/10.1007/s12265-016-9687-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4874910PMC
June 2016

Developing EHR-driven heart failure risk prediction models using CPXR(Log) with the probabilistic loss function.

J Biomed Inform 2016 Apr 1;60:260-9. Epub 2016 Feb 1.

Division of Health Informatics, Weill Cornell Medical College, New York, NY, USA.

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http://dx.doi.org/10.1016/j.jbi.2016.01.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886658PMC
April 2016

Quantifying the impact of chronic conditions on a diagnosis of major depressive disorder in adults: a cohort study using linked electronic medical records.

BMC Psychiatry 2016 Apr 26;16:114. Epub 2016 Apr 26.

Division of Health Informatics, Department of Healthcare Policy & Research, Weill Cornell Medicine, Cornell University, New York, NY, USA.

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http://dx.doi.org/10.1186/s12888-016-0821-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4845377PMC
April 2016

Using EHRs and Machine Learning for Heart Failure Survival Analysis.

Stud Health Technol Inform 2015 ;216:40-4

Robert D. and Patricia E. Kern Center for the Science of Health Care Delivery, Mayo Clinic, Rochester, MN, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905764PMC
March 2016

The phenotypic legacy of admixture between modern humans and Neandertals.

Science 2016 Feb;351(6274):737-41

Vanderbilt Genetics Institute, Vanderbilt University, Nashville, TN, USA. Department of Biomedical Informatics, Vanderbilt University, Nashville, TN, USA. Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA. Center for Quantitative Sciences, Vanderbilt University, Nashville, TN, USA.

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http://dx.doi.org/10.1126/science.aad2149DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4849557PMC
February 2016

Analysis of online information searching for cardiovascular diseases on a consumer health information portal.

AMIA Annu Symp Proc 2014 14;2014:739-48. Epub 2014 Nov 14.

Mayo Clinic, Rochester, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419905PMC
September 2015

Scalable and High-Throughput Execution of Clinical Quality Measures from Electronic Health Records using MapReduce and the JBoss® Drools Engine.

AMIA Annu Symp Proc 2014 14;2014:1864-73. Epub 2014 Nov 14.

Dept. of Health Sciences Research, Mayo Clinic, Rochester, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419873PMC
September 2015

Approaching patient engagement in research: what do patients with cardiovascular disease think?

Patient Prefer Adherence 2015 27;9:1061-4. Epub 2015 Jul 27.

Robert D and Patricia E Kern Center for the Science of Health Care Delivery, Mayo Clinic, Rochester, MN, USA ; Department of Health Sciences Research, Mayo Clinic, Rochester MN, USA.

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http://dx.doi.org/10.2147/PPA.S84980DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524577PMC
August 2015

Studying the Confounding Effects of Socio-Ecological Conditions in Retrospective Clinical Research: A Use Case of Social Stress.

AMIA Jt Summits Transl Sci Proc 2015 25;2015:41-5. Epub 2015 Mar 25.

Mayo Clinic, Division of Biostatistics & Informatics, Rochester, MN ; University of Minnesota, Institute for Health Informatics, Minneapolis, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4525238PMC
August 2015

Simplifying complex clinical element models to encourage adoption.

AMIA Jt Summits Transl Sci Proc 2014 7;2014:26-31. Epub 2014 Apr 7.

Department of Health Sciences Research, Mayo Clinic, Rochester, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419759PMC
May 2015

Variation in Cohorts Derived from EHR Data in Four Care Delivery Settings.

AMIA Jt Summits Transl Sci Proc 2014 7;2014:97-101. Epub 2014 Apr 7.

Intermountain Healthcare, Salt Lake City, UT.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419770PMC
May 2015

Online information seeking for cardiovascular diseases: a case study from Mayo Clinic.

Stud Health Technol Inform 2014 ;205:702-6

Mayo Clinic, Rochester, MN, USA.

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May 2015

Using linked data for mining drug-drug interactions in electronic health records.

Stud Health Technol Inform 2013 ;192:682-6

Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3909652PMC
April 2015

Characterizing the epidemiology of postoperative transfusion-related acute lung injury.

Anesthesiology 2015 Jan;122(1):12-20

From the Department of Internal Medicine (L.C.) Department of Anesthesiology (Q.J., A.S., G.A.W., D.J.K.), Division of Pulmonary and Critical Care Medicine (H.Y.), Department of Information Technology (S.P.M.), and Division of Biomedical Statistics and Informatics (J.P., D.R.S.), Mayo Clinic, Rochester, Minnesota.

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http://dx.doi.org/10.1097/ALN.0000000000000514DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4844077PMC
January 2015

Characterizing the epidemiology of perioperative transfusion-associated circulatory overload.

Anesthesiology 2015 Jan;122(1):21-8

From the Department of Anesthesiology (L.C., Q.J., A.S., M.H.E., G.A.W., D.J.K.), Division of Pulmonary and Critical Care Medicine (H.Y.), Department of Information Technology (S.P.M.), and Division of Biomedical Statistics and Informatics (J.P., D.R.S.), Mayo Clinic, Rochester, Minnesota.

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http://dx.doi.org/10.1097/ALN.0000000000000513DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4857710PMC
January 2015

An electronic health record driven algorithm to identify incident antidepressant medication users.

J Am Med Inform Assoc 2014 Sep-Oct;21(5):785-91. Epub 2014 Apr 29.

Division of Epidemiology, Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA Department of Neurology, Mayo Clinic, Rochester, Minnesota, USA.

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http://dx.doi.org/10.1136/amiajnl-2014-002699DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4147111PMC
October 2014

Empowering Personalized Medicine with Big Data and Semantic Web Technology: Promises, Challenges, and Use Cases.

Proc IEEE Int Conf Big Data 2014 Oct;2014:790-795

Ohio Center for Excellence in Knowledge-enabled Computing (kno.e.sis) College of Computer Science and Engineering, Wright State University, Dayton, OH, USA.

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http://dx.doi.org/10.1109/BigData.2014.7004307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333680PMC
October 2014

Use of computerized algorithm to identify individuals in need of testing for celiac disease.

J Am Med Inform Assoc 2013 Dec 16;20(e2):e306-10. Epub 2013 Aug 16.

Department of Pediatrics, Örebro University Hospital, Örebro, Sweden.

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http://dx.doi.org/10.1136/amiajnl-2013-001924DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3861918PMC
December 2013

Electronic health records-driven phenotyping: challenges, recent advances, and perspectives.

J Am Med Inform Assoc 2013 Dec;20(e2):e206-11

Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA.

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http://dx.doi.org/10.1136/amiajnl-2013-002428DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3861925PMC
December 2013

Mining Genotype-Phenotype Associations from Public Knowledge Sources via Semantic Web Querying.

AMIA Jt Summits Transl Sci Proc 2013 18;2013:118-22. Epub 2013 Mar 18.

Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3845769PMC
December 2013

Using association rule mining for phenotype extraction from electronic health records.

AMIA Jt Summits Transl Sci Proc 2013 18;2013:142-6. Epub 2013 Mar 18.

Mayo Clinic, Rochester, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3845788PMC
December 2013

Bias in recording of body mass index data in the electronic health record.

AMIA Jt Summits Transl Sci Proc 2013 18;2013:214-8. Epub 2013 Mar 18.

Intermountain Healthcare, Salt Lake City, UT;

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3845755PMC
December 2013

Using clinical element models for pharmacogenomic study data standardization.

AMIA Jt Summits Transl Sci Proc 2013 18;2013:292-6. Epub 2013 Mar 18.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3845787PMC
December 2013

PharmGKB Drug Data Normalization with NDF-RT.

AMIA Jt Summits Transl Sci Proc 2013 18;2013:180. Epub 2013 Mar 18.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4852296PMC
December 2013

Some experiences and opportunities for big data in translational research.

Genet Med 2013 Oct 5;15(10):802-9. Epub 2013 Sep 5.

Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA.

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http://dx.doi.org/10.1038/gim.2013.121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3906918PMC
October 2013

Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL.

J Biomed Inform 2013 Aug 29;46(4):690-6. Epub 2013 May 29.

Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA.

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http://dx.doi.org/10.1016/j.jbi.2013.05.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746070PMC
August 2013

Mining the human phenome using semantic web technologies: a case study for Type 2 Diabetes.

AMIA Annu Symp Proc 2012 3;2012:699-708. Epub 2012 Nov 3.

Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540447PMC
July 2013