Justin Guinney

Justin Guinney

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Justin Guinney

Justin Guinney

Publications by authors named "Justin Guinney"

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American Association for Cancer Research Project Genomics Evidence Neoplasia Information Exchange: From Inception to First Data Release and Beyond-Lessons Learned and Member Institutions' Perspectives.

JCO Clin Cancer Inform 2018 12;2:1-14

Christine M. Micheel, Michele L. LeNoue-Newton, and Mia A. Levy, Vanderbilt University Medical Center, Nashville, TN; Shawn M. Sweeney, American Association for Cancer Research, Philadelphia, PA; Fabrice André, Institut Gustave Roussy, Villejuif, France; Philippe L. Bedard, University of Toronto, Toronto, Ontario, Canada; Justin Guinney, Sage Bionetworks, Seattle, WA; Gerrit A. Meijer, Netherlands Cancer Institute, Amsterdam, the Netherlands; Barrett J. Rollins, Dana-Farber Cancer Institute, Brigham and Women's Hospital, and Harvard Medical School, Boston, MA; Charles L. Sawyers and Nikolaus Schultz, Memorial Sloan Kettering Cancer Center, New York, NY; Charles L. Sawyers, Howard Hughes Medical Institute, Chevy Chase, MD; Victor E. Velculescu, Johns Hopkins University School of Medicine, Baltimore, MD; and Kenna R. Mills Shaw, The University of Texas MD Anderson Cancer Center, Houston, TX.

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http://dx.doi.org/10.1200/CCI.17.00083DOI Listing
December 2018

Probing the chemical-biological relationship space with the Drug Target Explorer.

J Cheminform 2018 Aug 20;10(1):41. Epub 2018 Aug 20.

Sage Bionetworks, 1100 Fairview Avenue N, Seattle, WA, 98109, USA.

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http://dx.doi.org/10.1186/s13321-018-0297-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6102167PMC
August 2018

Cutaneous neurofibromas in the genomics era: current understanding and open questions.

Br J Cancer 2018 06 26;118(12):1539-1548. Epub 2018 Apr 26.

Department of Dermatology, Simmons Comprehensive Cancer Center and the Neurofibromatosis Clinic, UT Southwestern Medical Center, Dallas, TX, 75390, USA.

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http://www.nature.com/articles/s41416-018-0073-2
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http://dx.doi.org/10.1038/s41416-018-0073-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6008439PMC
June 2018

Alternative models for sharing confidential biomedical data.

Nat Biotechnol 2018 05;36(5):391-392

RWTH Aachen University, Faculty of Medicine, Germany.

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http://dx.doi.org/10.1038/nbt.4128DOI Listing
May 2018

Multi-targeting Drug Community Challenge.

Cell Chem Biol 2017 12;24(12):1434-1435

Department of Cell, Developmental and Regenerative Biology and School of Biomedical Sciences, Icahn School of Medicine at Mount Sinai, One Gustave Levy Place, New York, NY 10029, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chembiol.2017.12.006DOI Listing
December 2017

A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer.

JCO Clin Cancer Inform 2017 11;1:1-15

Fatemeh Seyednasrollah and Laura L. Elo, Turku Centre for Biotechnology; University of Turku; Åbo Akademi University, Turku, Finland; Devin C. Koestler, University of Kansas Medical Center, Kansas City, KS; Tao Wang, University of Texas Southwestern Medical Center, Dallas, TX; Stephen R. Piccolo, Brigham Young University, Provo; University of Utah, Salt Lake City, Utah, UT; Roberto Vega, Russell Greiner, and Luke Kumar, University of Alberta; Alberta Innovates Centre for Machine Learning, Edmonton, Alberta, Canada; Christiane Fuchs, Helmholtz Zentrum München, Neuherberg; Technische Universität München, Garching, Germany; Eyal Gofer, The Hebrew University, Jerusalem, Israel; Russell D. Wolfinger, SAS Institute, Cary, NC; Kimberly Kanigel Winner and James C. Costello, University of Colorado, Anschutz Medical Campus, Aurora, CO; Chris Bare, Elias Chaibub Neto, Thomas Yu, Thea Norman, and Justin Guinney, Sage Bionetworks, Seattle, WA; Liji Shen and Fang Liz Zhou, Sanofi, Bridgewater, NJ; Kald Abdallah, AstraZeneca, Gaithersburg, MD; Gustavo Stolovitzky, IBM Research, Yorktown Heights; Howard I. Scher, Memorial Sloan Kettering Cancer Center and Weill Cornell Medical College, New York, NY; Howard R. Soule, Prostate Cancer Foundation, Santa Monica; Charles J. Ryan, University of California, San Francisco, CA; Christopher J. Sweeney, Dana-Farber Cancer Institute and Brigham and Women's Hospital, Harvard Medical School, Boston, MA; and Oliver Sartor, Tulane University, New Orleans, LA.

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http://dx.doi.org/10.1200/CCI.17.00018DOI Listing
November 2017

Community mining of open clinical trial data.

Oncotarget 2017 Oct 13;8(47):81721-81722. Epub 2017 Sep 13.

James C. Costello: Department of Pharmacology, University of Colorado, Anschutz Medical Campus, Aurora, CO, USA.

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http://dx.doi.org/10.18632/oncotarget.20853DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5669837PMC
October 2017

Consensus molecular subtypes and the evolution of precision medicine in colorectal cancer.

Nat Rev Cancer 2017 02 4;17(2):79-92. Epub 2017 Jan 4.

Vall d'Hebron Institute of Oncology (VHIO), Universitat Autònoma de Barcelona, Barcelona 08035, Spain.

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http://dx.doi.org/10.1038/nrc.2016.126DOI Listing
February 2017

PERSONALIZED HYPOTHESIS TESTS FOR DETECTING MEDICATION RESPONSE IN PARKINSON DISEASE PATIENTS USING iPHONE SENSOR DATA.

Pac Symp Biocomput 2016 ;21:273-84

Sage Bionetworks, 1100 Fairview Avenue North, Seattle, Washington 98109, USA*Corresponding author.,

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October 2016

American Joint Committee on Cancer acceptance criteria for inclusion of risk models for individualized prognosis in the practice of precision medicine.

CA Cancer J Clin 2016 09 19;66(5):370-4. Epub 2016 Jan 19.

Professor, Life Science, Arizona State University, Tempe, AZ; Professor, Laboratory Medicine and Pathology, Mayo Clinic School of Medicine, Rochester, MN; Chief Medical Officer, National Biomarker Development Alliance, Scottsdale, AZ.

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http://dx.doi.org/10.3322/caac.21339DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4955656PMC
September 2016

rCGH: a comprehensive array-based genomic profile platform for precision medicine.

Bioinformatics 2016 05 26;32(9):1402-4. Epub 2015 Dec 26.

INSERM U981, Gustave Roussy, University Paris-Sud, Villejuif 94805, France, Department of Medical Oncology, Gustave Roussy, Villejuif 94805, France.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btv718DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4848396PMC
May 2016

Social interactomes for enabling research communities.

Cancer Discov 2014 Nov;4(11):1265-8

Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland. Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, California. Department of Cell and Molecular Pharmacology, University of California, San Francisco, California.

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http://dx.doi.org/10.1158/2159-8290.CD-14-0774DOI Listing
November 2014

Genome-wide methylation profiles reveal quantitative views of human aging rates.

Mol Cell 2013 Jan 21;49(2):359-367. Epub 2012 Nov 21.

Molecular Medicine Research Center and Department of Ophthalmology, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China.

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http://dx.doi.org/10.1016/j.molcel.2012.10.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3780611PMC
January 2013

GSVA: gene set variation analysis for microarray and RNA-seq data.

BMC Bioinformatics 2013 Jan 16;14. Epub 2013 Jan 16.

Research Program on Biomedical Informatics, Hospital del Mar Medical Research Institute, Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1186/1471-2105-14-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3618321PMC
January 2013

Evidence for type II cells as cells of origin of K-Ras-induced distal lung adenocarcinoma.

Proc Natl Acad Sci U S A 2012 Mar 12;109(13):4910-5. Epub 2012 Mar 12.

Department of Surgery, Duke University, Durham, NC 27710, USA.

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http://dx.doi.org/10.1073/pnas.1112499109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3323959PMC
March 2012

Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge.

BMC Bioinformatics 2012 Mar 23;13:46. Epub 2012 Mar 23.

Bioinformatics Graduate Program, and Department of Biomedical Engineering, Boston University, 44 Cummington Street, Boston, MA 02215, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-13-46DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3382432PMC
March 2012

A 10-gene progenitor cell signature predicts poor prognosis in lung adenocarcinoma.

Ann Thorac Surg 2011 Apr 25;91(4):1046-50; discussion 1050. Epub 2011 Feb 25.

Department of Surgery, Duke University, Durham, North Carolina, USA.

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http://dx.doi.org/10.1016/j.athoracsur.2010.12.054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3376444PMC
April 2011

Genomic strategy for targeting therapy in castration-resistant prostate cancer.

J Clin Oncol 2009 Apr 16;27(12):2022-9. Epub 2009 Mar 16.

The Duke Institute for Genome Sciences & Policy, Duke Comprehensive Cancer Center, Duke University, Durham, NC 27710, USA.

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http://jco.ascopubs.org/content/27/12/2022.full.pdf
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http://jco.ascopubs.org/cgi/doi/10.1200/JCO.2008.17.2882
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http://dx.doi.org/10.1200/JCO.2008.17.2882DOI Listing
April 2009

F-Seq: a feature density estimator for high-throughput sequence tags.

Bioinformatics 2008 Nov 10;24(21):2537-8. Epub 2008 Sep 10.

Institute for Genome Sciences and Policy, Duke University, Durham, NC 27708, USA.

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http://dx.doi.org/10.1093/bioinformatics/btn480DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2732284PMC
November 2008

Modeling cancer progression via pathway dependencies.

PLoS Comput Biol 2008 Feb;4(2):e28

Institute for Genome Sciences and Policy, Duke University, Durham, North Carolina, USA.

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http://dx.doi.org/10.1371/journal.pcbi.0040028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2242820PMC
February 2008