Junmin Peng

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Junmin Peng

Publications by authors named "Junmin Peng"

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100Publications

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Mutant LRRK2 mediates peripheral and central immune responses leading to neurodegeneration in vivo.

Brain 2018 Jun;141(6):1753-1769

Department of Developmental Neurobiology, St. Jude Children's Research Hospital, 262 Danny Thomas Blvd, Memphis TN 38105, USA.

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June 2018

Quantitative Phosphoproteomic Analysis of Brain Tissues.

Methods Mol Biol 2017 ;1598:199-211

Department of Structural Biology, St. Jude Children's Research Hospital, MS 311, D1034C, 262 Danny Thomas Place, Memphis, TN, 38105-3678, USA.

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March 2018

Discrete roles and bifurcation of PTEN signaling and mTORC1-mediated anabolic metabolism underlie IL-7-driven B lymphopoiesis.

Sci Adv 2018 Jan 31;4(1):eaar5701. Epub 2018 Jan 31.

Department of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.

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January 2018

Deep Proteome Profiling by Isobaric Labeling, Extensive Liquid Chromatography, Mass Spectrometry, and Software-assisted Quantification.

J Vis Exp 2017 11 15(129). Epub 2017 Nov 15.

St. Jude Proteomics Facility, St. Jude Children's Research Hospital; Departments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital;

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November 2017

Binding of PLD2-Generated Phosphatidic Acid to KIF5B Promotes MT1-MMP Surface Trafficking and Lung Metastasis of Mouse Breast Cancer Cells.

Dev Cell 2017 10 12;43(2):186-197.e7. Epub 2017 Oct 12.

Department of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, 6431 Fannin St., Houston, TX 77030, USA. Electronic address:

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October 2017

The neoepitope landscape in pediatric cancers.

Genome Med 2017 08 31;9(1):78. Epub 2017 Aug 31.

Department of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, 38105, USA.

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August 2017

Targeting human Mas-related G protein-coupled receptor X1 to inhibit persistent pain.

Proc Natl Acad Sci U S A 2017 03 21;114(10):E1996-E2005. Epub 2017 Feb 21.

The Solomon H. Snyder Department of Neuroscience, Center for Sensory Biology, Johns Hopkins University School of Medicine, Baltimore, MD 21205;

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March 2017

The C. elegans Taste Receptor Homolog LITE-1 Is a Photoreceptor.

Cell 2016 11;167(5):1252-1263.e10

Life Sciences Institute and Department of Molecular and Integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA. Electronic address:

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November 2016

C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles.

Cell 2016 Oct;167(3):774-788.e17

Department of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA; Howard Hughes Medical Institute, Department of Cell and Molecular Biology, St Jude Children's Research Hospital, Memphis, TN 38105, USA. Electronic address:

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October 2016

JUMPg: An Integrative Proteogenomics Pipeline Identifying Unannotated Proteins in Human Brain and Cancer Cells.

J Proteome Res 2016 07 13;15(7):2309-20. Epub 2016 Jun 13.

Banner Sun Health Research Institute , Sun City, Arizona 85351, United States.

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July 2016

SUMO Pathway Modulation of Regulatory Protein Binding at the Ribosomal DNA Locus in Saccharomyces cerevisiae.

Genetics 2016 Apr 2;202(4):1377-94. Epub 2016 Feb 2.

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520-8114

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April 2016

Enhanced Purification of Ubiquitinated Proteins by Engineered Tandem Hybrid Ubiquitin-binding Domains (ThUBDs).

Mol Cell Proteomics 2016 Apr;15(4):1381-96

From the ‡State Key Laboratory of Proteomics, National Engineering Research Center for Protein Drugs, Beijing Proteome Research Center, National Center for Protein Sciences Beijing, Beijing Institute of Radiation Medicine, Beijing 102206,China; the ¶School of Basic Medical Science, Key Laboratory of Combinatorial Biosynthesis and Drug Discovery of Ministry of Education, School of Pharmaceutical Sciences, Wuhan University, Wuhan 430071, China;

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April 2016

Multiple Weak Linear Motifs Enhance Recruitment and Processivity in SPOP-Mediated Substrate Ubiquitination.

J Mol Biol 2016 Mar 22;428(6):1256-1271. Epub 2015 Oct 22.

Department of Structural Biology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA. Electronic address:

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March 2016

Quantitative protein analysis by mass spectrometry.

Methods Mol Biol 2015 ;1278:281-305

St. Jude Proteomics Facility, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.

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December 2015

A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival.

Mol Cell Proteomics 2015 Dec 27;14(12):3132-41. Epub 2015 Sep 27.

From the Cell & Developmental Biology, Vanderbilt University School of Medicine, 1161 21st Avenue South, Nashville, TN 37232

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December 2015

Sequential Elution Interactome Analysis of the Mind Bomb 1 Ubiquitin Ligase Reveals a Novel Role in Dendritic Spine Outgrowth.

Mol Cell Proteomics 2015 Jul 30;14(7):1898-910. Epub 2015 Apr 30.

From the ‡Departments of Structural Biology and Developmental Neurobiology, §St. Jude Proteomics Facility,

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July 2015

Global ubiquitination analysis by SILAC in mammalian cells.

Methods Mol Biol 2014 ;1188:149-60

Department of Structural Biology, St. Jude Proteomics Facility, St Jude Children's Research Hospital, Memphis, TN, 38105, USA.

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March 2015

Systematic optimization of long gradient chromatography mass spectrometry for deep analysis of brain proteome.

J Proteome Res 2015 Feb 12;14(2):829-38. Epub 2014 Dec 12.

Department of Structural Biology, ‡St. Jude Proteomics Facility, and §̂Department of Developmental Neurobiology, St. Jude Children's Research Hospital , 262 Danny Thomas Place, Memphis, Tennessee 38105, United States.

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February 2015

Refined phosphopeptide enrichment by phosphate additive and the analysis of human brain phosphoproteome.

Proteomics 2015 Jan 15;15(2-3):500-7. Epub 2014 Dec 15.

St. Jude Proteomics Facility, St. Jude Children's Research Hospital, Memphis, TN, USA.

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January 2015

Altered ubiquitin causes perturbed calcium homeostasis, hyperactivation of calpain, dysregulated differentiation, and cataract.

Proc Natl Acad Sci U S A 2015 Jan 12;112(4):1071-6. Epub 2015 Jan 12.

Laboratory for Nutrition and Vision Research, US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA 02111; Department of Biological Chemistry, Weizmann Institute of Science, Rehovot 7610001, Israel

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January 2015

JUMP: a tag-based database search tool for peptide identification with high sensitivity and accuracy.

Mol Cell Proteomics 2014 Dec 8;13(12):3663-73. Epub 2014 Sep 8.

From the ‡St. Jude Proteomics Facility, St. Jude Children's Research Hospital, Memphis, Tennessee 38105; §Departments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105;

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December 2014

Integrated approaches for analyzing U1-70K cleavage in Alzheimer's disease.

J Proteome Res 2014 Nov 13;13(11):4526-34. Epub 2014 Jun 13.

Departments of Structural Biology and Developmental Neurobiology, ‡St. Jude Proteomics Facility, St. Jude Children's Research Hospital , Memphis, Tennessee 38105, United States.

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November 2014

Autoregulation of the 26S proteasome by in situ ubiquitination.

Mol Biol Cell 2014 Jun 17;25(12):1824-35. Epub 2014 Apr 17.

Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045

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June 2014

Cell type-restricted activity of hnRNPM promotes breast cancer metastasis via regulating alternative splicing.

Genes Dev 2014 Jun 19;28(11):1191-203. Epub 2014 May 19.

Division of Hematology/Oncology, Robert H. Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA;

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June 2014

A nano ultra-performance liquid chromatography-high resolution mass spectrometry approach for global metabolomic profiling and case study on drug-resistant multiple myeloma.

Anal Chem 2014 Apr 20;86(7):3667-75. Epub 2014 Mar 20.

Departments of †Structural Biology and Developmental Neurobiology and ‡St. Jude Proteomics Facility, St. Jude Children's Research Hospital , 262 Danny Thomas Place, Memphis, Tennessee 38105, United States.

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April 2014

The U4/U6 recycling factor SART3 has histone chaperone activity and associates with USP15 to regulate H2B deubiquitination.

J Biol Chem 2014 Mar 13;289(13):8916-30. Epub 2014 Feb 13.

From the Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523.

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March 2014

Identification and characterization of phosphorylation sites within the pregnane X receptor protein.

Biochem Pharmacol 2014 Jan 30;87(2):360-70. Epub 2013 Oct 30.

Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA. Electronic address:

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January 2014

A conserved protein with AN1 zinc finger and ubiquitin-like domains modulates Cdc48 (p97) function in the ubiquitin-proteasome pathway.

J Biol Chem 2013 Nov 11;288(47):33682-96. Epub 2013 Oct 11.

From the Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520.

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November 2013

Structural insights into the functions of TBK1 in innate antimicrobial immunity.

Structure 2013 Jul 6;21(7):1137-48. Epub 2013 Jun 6.

Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843-2128, USA.

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July 2013

Proteomic analysis of postsynaptic density in Alzheimer's disease.

Clin Chim Acta 2013 May 26;420:62-8. Epub 2013 Mar 26.

St. Jude Children's Research Hospital, Memphis, TN 38105-3678, United States.

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May 2013

Sjogren syndrome antigen B (SSB)/La promotes global microRNA expression by binding microRNA precursors through stem-loop recognition.

J Biol Chem 2013 Jan 5;288(1):723-36. Epub 2012 Nov 5.

Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.

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January 2013

The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis.

Cell 2013 Jan;152(1-2):196-209

Department of Biology and BioX Program, Stanford University, Stanford, CA 94305-5430, USA.

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January 2013

Characterizing ubiquitination sites by peptide-based immunoaffinity enrichment.

Mol Cell Proteomics 2012 Dec 23;11(12):1529-40. Epub 2012 Jun 23.

Department of Protein Chemistry, Genentech, Inc., South San Francisco, California 94080, USA.

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December 2012

Ubiquitin-specific protease 9x deubiquitinates and stabilizes the spinal muscular atrophy protein-survival motor neuron.

J Biol Chem 2012 Dec 30;287(52):43741-52. Epub 2012 Oct 30.

Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, Colorado 80045, USA.

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December 2012

The F-box protein FBXO44 mediates BRCA1 ubiquitination and degradation.

J Biol Chem 2012 Nov 18;287(49):41014-22. Epub 2012 Oct 18.

Department of Molecular Medicine, Institute of Biotechnology, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.

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November 2012

Analysis of ubiquitinated proteome by quantitative mass spectrometry.

Methods Mol Biol 2012 ;893:417-29

Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.

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September 2012

Quantitative proteomics to decipher ubiquitin signaling.

Amino Acids 2012 Sep 22;43(3):1049-60. Epub 2012 Jul 22.

Departments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.

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September 2012

Stable isotope labeling with amino acids in Drosophila for quantifying proteins and modifications.

J Proteome Res 2012 Sep 10;11(9):4403-12. Epub 2012 Aug 10.

Department of Human Genetics, Center for Neurodegenerative Diseases, Emory University School of Medicine, Atlanta, Georgia 30322, USA.

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September 2012

Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.

J Proteome Res 2012 Sep 15;11(9):4722-32. Epub 2012 Aug 15.

Departments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.

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September 2012

Asparaginyl endopeptidase cleaves TDP-43 in brain.

Proteomics 2012 Aug;12(15-16):2455-63

Department of Neurology, Center for Neurodegenerative Diseases, Emory University School of Medicine, Atlanta, GA 30322, USA.

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August 2012

PHD3-dependent hydroxylation of HCLK2 promotes the DNA damage response.

J Clin Invest 2012 Aug 17;122(8):2827-36. Epub 2012 Jul 17.

UNC McAllister Heart Institute and Department of Medicine, University of North Carolina, Chapel Hill, NC, USA.

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August 2012

Altered sodium channel-protein associations in critical illness myopathy.

Skelet Muscle 2012 Aug 30;2(1):17. Epub 2012 Aug 30.

Department of Neuroscience, Cell Biology, and Physiology, Wright State University School of Medicine, 3640 Colonel Glenn Hwy, Dayton, OH, 45435, USA.

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August 2012

Regulation of behavioral circadian rhythms and clock protein PER1 by the deubiquitinating enzyme USP2.

Biol Open 2012 Aug 28;1(8):789-801. Epub 2012 Jun 28.

Polypeptide Laboratory, Department of Medicine, McGill University and McGill University Health Centre Research Institute , Montréal, QC H3A 2B2 , Canada.

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August 2012

Deciphering tissue-specific ubiquitylation by mass spectrometry.

Methods Mol Biol 2012 ;832:65-80

Ikerbasque, Basque Foundation for Science, Bilbao, Spain.

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July 2012

Desumoylation of the endoplasmic reticulum membrane VAP family protein Scs2 by Ulp1 and SUMO regulation of the inositol synthesis pathway.

Mol Cell Biol 2012 Jan 24;32(1):64-75. Epub 2011 Oct 24.

Departments of Molecular, Cell, & Developmental Biology, Yale University, New Haven, Connecticut, USA.

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January 2012

SOX4 interacts with plakoglobin in a Wnt3a-dependent manner in prostate cancer cells.

BMC Cell Biol 2011 Nov 19;12:50. Epub 2011 Nov 19.

Department of Pathology & Laboratory Medicine, Emory University School of Medicine, Atlanta, GA 30322, USA.

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November 2011

Protein Cysteines Map to Functional Networks According to Steady-state Level of Oxidation.

J Proteomics Bioinform 2011 Oct;4(10):196-209

Division of Pulmonary, Allergy and Critical Care Medicine, Department of Medicine, Emory Proteomics Service Center, Emory University, Atlanta, Georgia 30322 USA.

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October 2011

Proteomics of gliomas: initial biomarker discovery and evolution of technology.

Neuro Oncol 2011 Sep;13(9):926-42

Laboratory of Molecular Neuro-Oncology, Departments of Neurosurgery, Hematology and Medical Oncology, School of Medicine, and Winship Cancer Institute, Emory University, Atlanta, GA 30322, USA.

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September 2011

Structural basis of SETD6-mediated regulation of the NF-kB network via methyl-lysine signaling.

Nucleic Acids Res 2011 Aug 22;39(15):6380-9. Epub 2011 Apr 22.

Department of Biochemistry, Emory University School of Medicine, 1510 Clifton Road, Atlanta, GA 30322, USA.

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August 2011

Upregulation of the CaV 1.1-ryanodine receptor complex in a rat model of critical illness myopathy.

Am J Physiol Regul Integr Comp Physiol 2011 Jun 6;300(6):R1384-91. Epub 2011 Apr 6.

Department of Neuroscience, Cell Biology and Physiology, Wright State University, Dayton, Ohio, USA.

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June 2011

Nuclear accumulation of stress response mRNAs contributes to the neurodegeneration caused by Fragile X premutation rCGG repeats.

PLoS Genet 2011 Jun 2;7(6):e1002102. Epub 2011 Jun 2.

Department of Human Genetics, Emory University School of Medicine, Atlanta, Georgia, USA.

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June 2011

A novel strategy to isolate ubiquitin conjugates reveals wide role for ubiquitination during neural development.

Mol Cell Proteomics 2011 May 22;10(5):M110.002188. Epub 2010 Sep 22.

CIC Biogune, Bizkaia Teknologi Parkea, 48160 Derio, Spain.

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May 2011

Diverse polyubiquitin chains accumulate following 26S proteasomal dysfunction in mammalian neurones.

Neurosci Lett 2011 Mar 5;491(1):44-7. Epub 2011 Jan 5.

School of Biomedical Sciences, University of Nottingham Medical School, Queens Medical Centre, Nottingham NG7 2UH, United Kingdom.

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March 2011

Polyubiquitin linkage profiles in three models of proteolytic stress suggest the etiology of Alzheimer disease.

J Biol Chem 2011 Mar 28;286(12):10457-65. Epub 2011 Jan 28.

Department of Human Genetics, Emory University School of Medicine, Atlanta, Georgia 30322, USA.

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March 2011

Rho kinase II phosphorylation of the lipoprotein receptor LR11/SORLA alters amyloid-beta production.

J Biol Chem 2011 Feb 8;286(8):6117-27. Epub 2010 Dec 8.

Department of Neurology, the Center for Neurodegenerative Diseases, Emory University School of Medicine, Atlanta, Georgia 30322, USA.

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February 2011

Identification of neuronal RNA targets of TDP-43-containing ribonucleoprotein complexes.

J Biol Chem 2011 Jan 4;286(2):1204-15. Epub 2010 Nov 4.

Department of Neuroscience, University of Texas Southwestern Medical Center,Dallas, Texas 75390-9111, USA.

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January 2011

Phosphoproteomic analysis reveals site-specific changes in GFAP and NDRG2 phosphorylation in frontotemporal lobar degeneration.

J Proteome Res 2010 Dec 22;9(12):6368-79. Epub 2010 Oct 22.

Department of Neurology, the Center for Neurodegenerative Diseases, Laboratory Medicine, and Proteomics Service Center, Emory University School of Medicine, Atlanta, Georgia 30322, United States.

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December 2010

Galectin-3 is a candidate biomarker for amyotrophic lateral sclerosis: discovery by a proteomics approach.

J Proteome Res 2010 Oct;9(10):5133-41

Department of Human Genetics, Emory University School of Medicine, Atlanta, Georgia 30322, USA.

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October 2010

At the crossroads of ubiquitin signaling and mass spectrometry.

Expert Rev Proteomics 2010 Oct;7(5):643-5

Department of Human Genetics, Center for Neurodegenerative Diseases, Emory University School of Medicine, 615 Michael Street, Atlanta, GA 30322, USA.

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October 2010

Human LSD2/KDM1b/AOF1 regulates gene transcription by modulating intragenic H3K4me2 methylation.

Mol Cell 2010 Jul;39(2):222-33

Division of Endocrinology, Diabetes, and Hypertension, Department of Medicine, Brigham and Women's Hospital, 221 Longwood Avenue, Boston, MA 02115, USA.

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July 2010

Protein kinase C inhibits autophagy and phosphorylates LC3.

Biochem Biophys Res Commun 2010 May 14;395(4):471-6. Epub 2010 Apr 14.

Department of Physiology and Biophysics, State University of New York at Buffalo, Buffalo, NY 14214, United States.

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May 2010

Multiplex SILAC analysis of a cellular TDP-43 proteinopathy model reveals protein inclusions associated with SUMOylation and diverse polyubiquitin chains.

Mol Cell Proteomics 2010 Apr 4;9(4):705-18. Epub 2010 Jan 4.

Department of Human Genetics, School of Medicine, Emory University, Atlanta, Georgia 30322, USA.

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April 2010

Ubiquitin chain elongation enzyme Ufd2 regulates a subset of Doa10 substrates.

J Biol Chem 2010 Apr 16;285(14):10265-72. Epub 2010 Feb 16.

Institute of Biotechnology, Department of Molecular Medicine, University of Texas Health Science Center, San Antonio, Texas 78245, USA.

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April 2010

Efficient internalization of MHC I requires lysine-11 and lysine-63 mixed linkage polyubiquitin chains.

Traffic 2010 Feb 17;11(2):210-20. Epub 2009 Nov 17.

School of Clinical Medicine, Cambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, UK.

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February 2010

Autophosphorylated CaMKIIalpha acts as a scaffold to recruit proteasomes to dendritic spines.

Cell 2010 Feb;140(4):567-78

The Picower Institute for Learning and Memory, Department of Brain and Cognitive Sciences and Biology, Massachusetts Institute of Technology, Cambridge, 02139, USA.

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February 2010

The lysine 48 and lysine 63 ubiquitin conjugates are processed differently by the 26 s proteasome.

J Biol Chem 2009 Dec;284(51):35485-94

Department of Biochemistry and Molecular Genetics, University of Colorado Denver School of Medicine, Aurora, Colorado 80045, USA.

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December 2009

Systematical optimization of reverse-phase chromatography for shotgun proteomics.

J Proteome Res 2009 Aug;8(8):3944-50

Department of Human Genetics, Center for Neurodegenerative Diseases, Emory University, Atlanta, Georgia 30322, USA.

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August 2009

C3PO, an endoribonuclease that promotes RNAi by facilitating RISC activation.

Science 2009 Aug;325(5941):750-3

Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.

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August 2009

Identification and characterization of neuronal mitogen-activated protein kinase substrates using a specific phosphomotif antibody.

Mol Cell Proteomics 2009 Apr 3;8(4):681-95. Epub 2008 Dec 3.

The Picower Institute for Learning and Memory, Howard Hughes Medical Institute, RIKEN-MIT Neuroscience Research Center, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.

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April 2009

Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation.

Cell 2009 Apr;137(1):133-45

Department of Human Genetics, Center for Neurodegenerative Diseases, Emory University, Atlanta, GA 30322, USA.

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April 2009

Human BRE1 is an E3 ubiquitin ligase for Ebp1 tumor suppressor.

Mol Biol Cell 2009 Feb 26;20(3):757-68. Epub 2008 Nov 26.

Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA 30322, USA.

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February 2009

USP19 deubiquitinating enzyme supports cell proliferation by stabilizing KPC1, a ubiquitin ligase for p27Kip1.

Mol Cell Biol 2009 Jan 17;29(2):547-58. Epub 2008 Nov 17.

Polypeptide Laboratory, Division of Endocrinology and Metabolism, Department of Medicine, McGill University, Montreal, Quebec, Canada.

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January 2009

Prolyl 4-hydroxylation regulates Argonaute 2 stability.

Nature 2008 Sep 6;455(7211):421-4. Epub 2008 Aug 6.

Department of Pathology, Harvard Medical School, New Research Building 854, 77 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.

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September 2008

Huntingtin-associated protein 1 interacts with Ahi1 to regulate cerebellar and brainstem development in mice.

J Clin Invest 2008 Aug;118(8):2785-95

Department of Human Genetics, Emory University School of Medicine, Atlanta, Georgia, USA.

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August 2008